Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47191 * 2 1 4 4 C 1.53009 * 109.46905 * 240.00227 * 2 1 3 5 5 C 1.50700 * 109.47083 * 120.00467 * 2 1 3 6 6 C 1.34334 * 126.16615 * 74.99888 * 5 2 1 7 7 O 1.34756 * 107.11118 * 180.25962 * 6 5 2 8 8 C 1.33969 * 107.75627 * 359.57910 * 7 6 5 9 9 C 1.50702 * 125.62176 * 180.13591 * 8 7 6 10 10 N 1.46491 * 109.47046 * 270.33784 * 9 8 7 11 11 C 1.36936 * 120.00087 * 90.00312 * 10 9 8 12 12 H 1.07999 * 120.00225 * 217.81172 * 11 10 9 13 13 C 1.38813 * 120.00383 * 37.80876 * 11 10 9 14 14 N 1.31620 * 119.99688 * 20.70062 * 13 11 10 15 15 Si 1.86797 * 120.00590 * 200.69843 * 13 11 10 16 16 H 1.48506 * 109.46827 * 59.99713 * 15 13 11 17 17 H 1.48497 * 109.47308 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46883 * 300.00252 * 15 13 11 19 19 C 1.46497 * 120.00136 * 269.99523 * 10 9 8 20 20 C 1.53002 * 117.50319 * 194.24600 * 19 10 9 21 21 C 1.53000 * 117.50020 * 125.58637 * 19 10 9 22 22 N 1.30256 * 108.76024 * 0.42583 * 8 7 6 23 23 H 1.08996 * 109.46779 * 299.99419 * 1 2 3 24 24 H 1.09003 * 109.47051 * 59.99918 * 1 2 3 25 25 H 1.09006 * 109.46872 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47505 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47623 * 300.00114 * 3 2 1 28 28 H 1.08997 * 109.47170 * 60.00212 * 3 2 1 29 29 H 1.09000 * 109.47245 * 299.99506 * 4 2 1 30 30 H 1.08998 * 109.47072 * 60.00398 * 4 2 1 31 31 H 1.09000 * 109.46966 * 180.02562 * 4 2 1 32 32 H 1.07994 * 126.44274 * 0.02562 * 6 5 2 33 33 H 1.09004 * 109.46685 * 30.34142 * 9 8 7 34 34 H 1.09001 * 109.46710 * 150.33455 * 9 8 7 35 35 H 0.96998 * 120.00218 * 174.92843 * 14 13 11 36 36 H 1.09004 * 115.55137 * 339.91741 * 19 10 9 37 37 H 1.09004 * 117.49277 * 359.97438 * 20 19 10 38 38 H 1.08993 * 117.50277 * 145.01852 * 20 19 10 39 39 H 1.09004 * 117.50155 * 214.98461 * 21 19 10 40 40 H 1.09002 * 117.49952 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0323 -0.7105 1.2304 6 6 2.0319 -2.0382 1.4348 7 8 2.5585 -2.2514 2.6568 8 6 2.8806 -1.0593 3.1765 9 6 3.5026 -0.8311 4.5300 10 7 2.4462 -0.6703 5.5321 11 6 1.9588 -1.7650 6.1948 12 1 0.9059 -1.8319 6.4258 13 6 2.8179 -2.7888 6.5698 14 7 4.1102 -2.5598 6.6704 15 14 2.1403 -4.4914 6.9319 16 1 1.4583 -5.0200 5.7232 17 1 3.2547 -5.3982 7.3073 18 1 1.1690 -4.4096 8.0524 19 6 1.9113 0.6616 5.8252 20 6 1.0666 0.8209 7.0910 21 6 0.3976 0.8551 5.7146 22 7 2.5619 -0.1297 2.3216 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2073 -2.1393 31 1 3.1300 -0.7217 -1.2491 32 1 1.6732 -2.7926 0.7503 33 1 4.1254 -1.6863 4.7925 34 1 4.1159 0.0696 4.5008 35 1 4.7012 -3.2533 7.0029 36 1 2.5479 1.4980 5.5366 37 1 0.9086 -0.0655 7.7054 38 1 1.1473 1.7620 7.6348 39 1 0.0384 1.8188 5.3535 40 1 -0.2002 -0.0086 5.4233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724355294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = 38.221221 kcal Electronic energy + Delta-G solvation = -20711.185959 eV Core-core repulsion = 17721.169816 eV Total energy + Delta-G solvation = -2990.016143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.06660 -38.85724 -38.18058 -35.57131 -34.81327 -32.98287 -30.59918 -28.45968 -28.11874 -27.47053 -25.63974 -23.79988 -22.99875 -22.17353 -21.74125 -20.10381 -18.58819 -17.81226 -17.37906 -17.22383 -16.27279 -15.95918 -15.77960 -15.15548 -15.02143 -14.84794 -14.58065 -14.27741 -13.68711 -13.21062 -13.16644 -12.94929 -12.81590 -12.75527 -12.55977 -12.40180 -12.23816 -12.15528 -12.05211 -12.00189 -11.80846 -11.59472 -11.52030 -11.22435 -11.00548 -10.53692 -9.50334 -8.60653 -7.99915 -5.59629 0.70392 1.40361 1.44935 1.50451 1.86061 2.15804 2.41700 3.07231 3.19264 3.44992 3.46836 3.78881 4.02317 4.10634 4.24659 4.27381 4.37474 4.45086 4.48633 4.66287 4.78364 4.79409 4.89365 4.89955 4.95274 4.99656 5.02133 5.07518 5.14397 5.18109 5.20082 5.28184 5.32694 5.44528 5.50329 5.53631 5.61204 5.64724 6.35265 6.98712 7.05818 7.64935 8.18217 9.00592 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.006613 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.159816 B = 4232.926703 C = 4937.711979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.012 3.988 3 C -0.123 4.123 4 C -0.134 4.134 5 C -0.014 4.014 6 C -0.109 4.109 7 O -0.222 6.222 8 C 0.187 3.813 9 C 0.233 3.767 10 N -0.548 5.548 11 C -0.275 4.275 12 H 0.051 0.949 13 C -0.018 4.018 14 N -0.908 5.908 15 Si 0.956 3.044 16 H -0.285 1.285 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.104 3.896 20 C -0.181 4.181 21 C -0.206 4.206 22 N -0.502 5.502 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.235 0.765 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.261 0.739 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 4.482 -13.112 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.011 3.989 3 C -0.180 4.180 4 C -0.191 4.191 5 C -0.134 4.134 6 C -0.179 4.179 7 O -0.108 6.108 8 C -0.022 4.022 9 C 0.104 3.896 10 N -0.264 5.264 11 C -0.404 4.404 12 H 0.069 0.931 13 C -0.217 4.217 14 N -0.550 5.550 15 Si 0.784 3.216 16 H -0.211 1.211 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.004 4.004 20 C -0.219 4.219 21 C -0.247 4.247 22 N -0.233 5.233 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.251 0.749 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.302 4.935 -12.939 14.501 hybrid contribution -0.396 -1.833 0.447 1.927 sum -4.698 3.103 -12.492 13.702 Atomic orbital electron populations 1.21849 0.92644 1.02287 1.02184 1.19070 0.95840 0.95197 0.88763 1.21635 1.00398 0.94280 1.01723 1.21882 1.00848 1.00643 0.95726 1.22224 1.02880 0.91447 0.96850 1.25234 1.06431 0.99643 0.86616 1.84532 1.60692 1.36940 1.28594 1.28677 0.98327 0.76758 0.98467 1.19459 0.90027 1.03002 0.77085 1.43390 1.42856 1.01951 1.38204 1.18941 0.91755 0.96765 1.32966 0.93095 1.25813 0.95709 1.02326 0.97842 1.69926 1.03895 1.34299 1.46901 0.85529 0.77739 0.80284 0.78089 1.21146 1.20865 1.19729 1.21401 0.90716 0.87914 1.00338 1.23094 1.05571 1.02317 0.90967 1.23211 0.98863 1.01238 1.01360 1.70328 1.17320 1.33286 1.02362 0.94576 0.89389 0.92268 0.93824 0.90187 0.94048 0.91623 0.89543 0.93270 0.74895 0.88658 0.89890 0.92955 0.87499 0.90570 0.87346 0.88036 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.46 71.98 0.61 -2.33 16 2 C 0.01 0.30 0.95 -52.93 -0.05 0.25 16 3 C -0.12 -3.08 8.05 71.98 0.58 -2.50 16 4 C -0.13 -2.52 8.19 71.99 0.59 -1.93 16 5 C -0.01 -0.48 5.53 41.26 0.23 -0.26 16 6 C -0.11 -3.82 11.45 66.93 0.77 -3.06 16 7 O -0.22 -10.02 10.78 -3.78 -0.04 -10.06 16 8 C 0.19 8.58 7.93 88.34 0.70 9.28 16 9 C 0.23 11.30 5.96 85.64 0.51 11.81 16 10 N -0.55 -27.52 2.77 -682.35 -1.89 -29.41 16 11 C -0.27 -14.94 8.04 84.03 0.68 -14.27 16 12 H 0.05 2.85 7.21 -2.91 -0.02 2.83 16 13 C -0.02 -0.97 4.97 84.86 0.42 -0.55 16 14 N -0.91 -50.91 11.44 21.65 0.25 -50.66 16 15 Si 0.96 44.31 29.60 68.60 2.03 46.34 16 16 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 19 C 0.10 4.52 6.61 44.99 0.30 4.82 16 20 C -0.18 -7.14 9.81 30.62 0.30 -6.84 16 21 C -0.21 -8.13 10.08 30.62 0.31 -7.82 16 22 N -0.50 -21.04 10.67 -291.97 -3.11 -24.16 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 26 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.06 1.10 7.51 -2.39 -0.02 1.08 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.23 5.88 7.66 -2.91 -0.02 5.86 16 33 H 0.10 5.12 5.51 -2.38 -0.01 5.11 16 34 H 0.08 3.74 8.04 -2.39 -0.02 3.72 16 35 H 0.26 14.08 8.32 -92.71 -0.77 13.30 16 36 H 0.11 4.28 8.10 -2.39 -0.02 4.26 16 37 H 0.08 3.38 6.96 -2.39 -0.02 3.37 16 38 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 40 H 0.06 2.60 7.99 -2.39 -0.02 2.58 16 Total: -1.00 -63.19 331.25 4.18 -59.01 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 1.01 Total: 22.34 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 5.94 Total: -13.39 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.75 Total: -104.23 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.04 Total: -10.06 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.19 4.18 -59.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724355294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.229 kcal (2) G-P(sol) polarization free energy of solvation -63.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds