Wall clock time and date at job start Mon Mar 30 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46877 * 2 1 4 4 C 1.53000 * 109.46917 * 119.99800 * 2 1 3 5 5 N 1.46509 * 109.46644 * 174.17161 * 4 2 1 6 6 C 1.46493 * 119.99881 * 276.72572 * 5 4 2 7 7 C 1.50700 * 109.47426 * 270.00378 * 6 5 4 8 8 H 1.07998 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99994 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99693 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99940 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46980 * 90.00888 * 11 9 7 13 13 H 1.48501 * 109.47165 * 210.00256 * 11 9 7 14 14 H 1.48493 * 109.47241 * 330.00445 * 11 9 7 15 15 C 1.34770 * 119.99833 * 96.73119 * 5 4 2 16 16 O 1.21284 * 120.00138 * 185.33236 * 15 5 4 17 17 C 1.50703 * 120.00162 * 5.33472 * 15 5 4 18 18 C 1.52998 * 109.47190 * 175.60624 * 17 15 5 19 19 C 1.47200 * 115.56593 * 34.31045 * 18 17 15 20 20 N 6.17704 * 150.83363 * 40.52445 * 2 1 3 21 21 C 1.53004 * 117.49895 * 179.97438 * 18 17 15 22 22 C 1.53006 * 60.03009 * 107.48014 * 21 18 17 23 23 H 1.08998 * 109.47115 * 299.99805 * 1 2 3 24 24 H 1.09000 * 109.47258 * 60.00343 * 1 2 3 25 25 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47115 * 240.00195 * 2 1 3 27 27 H 1.09004 * 109.46722 * 304.67584 * 3 2 1 28 28 H 1.09002 * 109.47323 * 64.67768 * 3 2 1 29 29 H 1.09003 * 109.47088 * 184.68118 * 3 2 1 30 30 H 1.08995 * 109.47316 * 54.17592 * 4 2 1 31 31 H 1.08997 * 109.47010 * 294.16805 * 4 2 1 32 32 H 1.09001 * 109.47553 * 30.00678 * 6 5 4 33 33 H 1.09006 * 109.46792 * 150.00414 * 6 5 4 34 34 H 0.97000 * 119.99462 * 179.97438 * 10 9 7 35 35 H 1.08990 * 109.47444 * 55.60320 * 17 15 5 36 36 H 1.09011 * 109.46774 * 295.60305 * 17 15 5 37 37 H 1.08998 * 117.50051 * 214.97556 * 21 18 17 38 38 H 1.08998 * 117.49768 * 359.97438 * 21 18 17 39 39 H 1.08997 * 117.50099 * 107.50629 * 22 21 18 40 40 H 1.08997 * 117.49552 * 252.52447 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4983 -0.8439 1.1811 6 6 4.1065 -1.9421 0.4262 7 6 4.3014 -3.1287 1.3346 8 1 4.0018 -3.0707 2.3705 9 6 4.8623 -4.2884 0.8430 10 7 5.0319 -5.3240 1.6357 11 14 5.3799 -4.3890 -0.9490 12 1 6.7905 -3.9446 -1.0825 13 1 5.2558 -5.7911 -1.4222 14 1 4.5049 -3.5113 -1.7670 15 6 4.2802 0.0537 1.8131 16 8 5.4847 0.0100 1.6780 17 6 3.6580 1.1115 2.6877 18 6 4.7611 1.9249 3.3675 19 6 5.9818 2.1301 2.5709 20 7 6.9238 2.2883 1.9561 21 6 4.3302 3.0563 4.3031 22 6 4.9226 1.7697 4.8818 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6098 1.9799 -0.8452 28 1 1.7466 1.9316 0.9289 29 1 3.1267 1.4437 -0.0839 30 1 1.5940 -1.7143 1.3030 31 1 1.7644 -0.1506 2.1361 32 1 3.4527 -2.2208 -0.4003 33 1 5.0719 -1.6224 0.0339 34 1 5.4261 -6.1400 1.2898 35 1 3.0368 0.6363 3.4467 36 1 3.0432 1.7726 2.0767 37 1 4.9507 3.9520 4.3289 38 1 3.2607 3.2213 4.4340 39 1 5.9327 1.8190 5.2882 40 1 4.2427 1.0881 5.3930 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815131441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:50 Heat of formation + Delta-G solvation = 14.015033 kcal Electronic energy + Delta-G solvation = -20604.998342 eV Core-core repulsion = 17613.932540 eV Total energy + Delta-G solvation = -2991.065802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89315 -37.97723 -36.36230 -35.06902 -33.75894 -32.31094 -30.12844 -27.82406 -27.08786 -25.64707 -23.48288 -22.64296 -22.05760 -20.34569 -18.68834 -17.18058 -16.92368 -16.38029 -15.47344 -15.16034 -14.85998 -14.53164 -14.07696 -13.67841 -13.55283 -13.33858 -12.91888 -12.68879 -12.48253 -12.43430 -12.20489 -11.97322 -11.76359 -11.70405 -11.55628 -11.43219 -11.07244 -11.01350 -10.81823 -10.67193 -10.50237 -10.43548 -10.13106 -9.99292 -9.54324 -8.97237 -8.59569 -7.72428 -6.10129 -4.08675 2.88891 3.25800 3.28154 3.28931 3.34726 3.37918 3.68047 3.93766 4.15502 4.39112 4.46615 4.76317 4.83603 4.94007 5.02539 5.15817 5.23050 5.35472 5.40326 5.47256 5.49560 5.55163 5.63861 5.69294 5.74084 5.79107 5.88962 5.93182 5.97918 6.09091 6.17619 6.34894 6.43249 6.69703 6.96153 7.31954 7.60300 8.14350 8.21318 8.45342 8.89111 8.94951 9.50726 11.03141 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.007241 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.216151 B = 3865.788131 C = 4896.037869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.150 4.150 4 C 0.114 3.886 5 N -0.589 5.589 6 C 0.217 3.783 7 C -0.528 4.528 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.897 5.897 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.507 3.493 16 O -0.530 6.530 17 C -0.111 4.111 18 C -0.031 4.031 19 C 0.257 3.743 20 N -0.432 5.432 21 C -0.149 4.149 22 C -0.146 4.146 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 15.405 3.237 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.207 4.207 4 C -0.010 4.010 5 N -0.320 5.320 6 C 0.096 3.904 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.293 3.707 16 O -0.406 6.406 17 C -0.151 4.151 18 C -0.035 4.035 19 C -0.060 4.060 20 N -0.109 5.109 21 C -0.188 4.188 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.270 15.383 2.204 18.095 hybrid contribution -0.102 -0.561 -0.744 0.937 sum -9.372 14.822 1.461 17.597 Atomic orbital electron populations 1.21759 0.94771 1.01981 1.01511 1.21582 0.95646 0.96505 1.00043 1.21989 1.01424 0.96027 1.01270 1.21607 0.81193 1.01507 0.96708 1.47820 1.05440 1.27535 1.51158 1.19632 0.94064 0.84780 0.91922 1.21315 1.41517 0.95638 0.98220 0.90701 1.24837 0.94950 0.95508 0.97603 1.69891 1.44423 1.03673 1.35552 0.86880 0.79972 0.77390 0.85647 1.19963 1.21034 1.19084 1.20176 0.87326 0.82352 0.80807 1.90704 1.14413 1.72567 1.62920 1.21574 0.96702 0.96843 0.99993 1.17934 0.90560 1.04296 0.90706 1.26993 0.93218 0.92095 0.93677 1.81081 1.11052 1.10932 1.07850 1.23198 1.02576 0.92747 1.00231 1.23259 1.03622 0.99761 0.91755 0.92674 0.92815 0.92354 0.90651 0.92819 0.92498 0.92624 0.89817 0.91005 0.95318 0.94608 0.92567 0.87546 0.87527 0.87918 0.86941 0.87877 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.12 -1.45 3.11 -90.62 -0.28 -1.73 16 3 C -0.15 -1.68 7.59 37.16 0.28 -1.40 16 4 C 0.11 1.64 4.89 -4.04 -0.02 1.62 16 5 N -0.59 -11.50 2.26 -175.06 -0.40 -11.89 16 6 C 0.22 5.25 4.29 -5.20 -0.02 5.23 16 7 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 11 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 12 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.51 9.80 6.31 -10.99 -0.07 9.73 16 16 O -0.53 -12.88 12.96 5.55 0.07 -12.81 16 17 C -0.11 -1.41 4.21 -27.88 -0.12 -1.53 16 18 C -0.03 -0.40 2.29 -157.26 -0.36 -0.76 16 19 C 0.26 4.55 12.01 -20.76 -0.25 4.30 16 20 N -0.43 -8.97 18.28 42.15 0.77 -8.20 16 21 C -0.15 -1.20 9.93 -26.73 -0.27 -1.46 16 22 C -0.15 -1.45 9.86 -26.69 -0.26 -1.71 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 6.47 -51.93 -0.34 0.17 16 29 H 0.05 0.77 6.88 -51.93 -0.36 0.41 16 30 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 31 H 0.07 0.81 6.12 -51.93 -0.32 0.49 16 32 H 0.03 0.67 6.99 -51.93 -0.36 0.31 16 33 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.11 1.09 7.17 -51.93 -0.37 0.72 16 36 H 0.11 1.10 4.77 -51.92 -0.25 0.85 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.11 0.95 8.05 -51.93 -0.42 0.53 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -36.33 327.49 -6.13 -42.45 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.15 Total: -2.83 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.46 Total: -2.05 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 1.15 Total: -46.97 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.33 -6.13 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815131441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.468 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds