Wall clock time and date at job start Mon Mar 30 2020 07:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46950 * 299.99999 * 3 2 1 6 6 H 1.48501 * 109.46895 * 59.99729 * 3 2 1 7 7 C 1.37880 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99632 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47831 * 300.02148 * 9 7 2 11 11 C 1.53096 * 109.47793 * 180.02562 * 9 7 2 12 12 C 1.53180 * 109.20896 * 182.36173 * 11 9 7 13 13 C 1.53312 * 108.95655 * 56.97480 * 12 11 9 14 14 C 1.53099 * 109.20343 * 303.05347 * 13 12 11 15 15 C 1.52992 * 109.40863 * 177.57915 * 14 13 12 16 16 C 1.53001 * 109.50664 * 179.81766 * 15 14 13 17 17 C 1.52998 * 109.47342 * 300.03305 * 16 15 14 18 18 C 1.53005 * 109.44188 * 60.04178 * 17 16 15 19 19 C 1.52980 * 109.43232 * 297.55656 * 14 13 12 20 20 H 1.08999 * 109.46525 * 300.19632 * 19 14 13 21 21 C 1.53005 * 109.46444 * 60.17588 * 19 14 13 22 22 C 1.52997 * 117.49950 * 216.63143 * 21 19 14 23 23 C 1.53001 * 117.49853 * 148.00826 * 21 19 14 24 24 O 1.42881 * 109.43363 * 57.57527 * 14 13 12 25 25 H 0.96998 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.52551 * 302.29394 * 11 9 7 27 27 H 1.09000 * 109.52727 * 62.42435 * 11 9 7 28 28 H 1.08997 * 109.54837 * 176.90467 * 12 11 9 29 29 H 1.09003 * 109.53998 * 297.17449 * 12 11 9 30 30 H 1.08999 * 109.50825 * 183.13442 * 13 12 11 31 31 H 1.08998 * 109.55680 * 62.99939 * 13 12 11 32 32 H 1.08998 * 109.46529 * 299.83312 * 15 14 13 33 33 H 1.09004 * 109.46459 * 59.81798 * 15 14 13 34 34 H 1.08997 * 109.46839 * 60.03501 * 16 15 14 35 35 H 1.09004 * 109.46806 * 180.02562 * 16 15 14 36 36 H 1.09003 * 109.46942 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47519 * 300.04181 * 17 16 15 38 38 H 1.08997 * 109.47252 * 59.95634 * 18 17 16 39 39 H 1.09010 * 109.46583 * 179.97438 * 18 17 16 40 40 H 1.08996 * 115.54663 * 2.34439 * 21 19 14 41 41 H 1.09001 * 117.50158 * 0.02562 * 22 21 19 42 42 H 1.08998 * 117.49879 * 145.02181 * 22 21 19 43 43 H 1.08991 * 117.49903 * 214.98346 * 23 21 19 44 44 H 1.09004 * 117.49897 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6244 -2.5570 0.8894 11 6 2.2457 -3.6629 -0.0005 12 6 1.4746 -4.9851 -0.0601 13 6 0.5796 -4.9839 -1.3049 14 6 -0.3507 -3.7690 -1.2551 15 6 -1.2042 -3.7298 -2.5243 16 6 -2.1380 -2.5189 -2.4748 17 6 -3.0492 -2.6272 -1.2505 18 6 -2.1949 -2.6640 0.0184 19 6 -1.2613 -3.8751 -0.0304 20 1 -1.8535 -4.7878 -0.0960 21 6 -0.4070 -3.9118 1.2384 22 6 -0.8822 -4.8074 2.3843 23 6 -0.9956 -3.2864 2.5046 24 8 0.4301 -2.5756 -1.1677 25 1 -0.4850 0.8400 -0.0004 26 1 2.8997 -3.5832 -0.8690 27 1 2.8440 -3.6309 0.9101 28 1 2.1783 -5.8156 -0.1158 29 1 0.8573 -5.0877 0.8324 30 1 -0.0150 -5.8972 -1.3266 31 1 1.1994 -4.9315 -2.1999 32 1 -0.5549 -3.6525 -3.3963 33 1 -1.7963 -4.6425 -2.5921 34 1 -1.5461 -1.6061 -2.4077 35 1 -2.7461 -2.4919 -3.3791 36 1 -3.7148 -1.7647 -1.2155 37 1 -3.6406 -3.5403 -1.3172 38 1 -1.6030 -1.7512 0.0845 39 1 -2.8437 -2.7407 0.8910 40 1 0.6679 -3.8190 1.0841 41 1 -1.8031 -5.3708 2.2341 42 1 -0.1197 -5.3042 2.9841 43 1 -0.3078 -2.7825 3.1836 44 1 -1.9916 -2.8491 2.4339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829186680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:58 Heat of formation + Delta-G solvation = 12.520031 kcal Electronic energy + Delta-G solvation = -22991.619769 eV Core-core repulsion = 20104.029483 eV Total energy + Delta-G solvation = -2887.590286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30247 -37.42155 -37.36142 -34.74645 -33.83668 -32.16717 -31.01036 -28.70515 -26.81106 -24.98195 -23.83983 -23.31857 -22.30533 -21.69379 -20.22568 -19.87318 -18.49042 -16.78468 -16.55069 -16.06576 -15.95630 -15.66545 -15.36554 -14.88966 -14.52536 -14.30395 -14.01396 -13.72106 -13.53545 -13.15087 -12.89883 -12.81128 -12.60935 -12.46882 -12.37418 -12.17227 -12.10549 -11.97450 -11.67245 -11.63074 -11.37973 -11.19239 -11.12967 -10.95194 -10.61583 -10.51985 -10.07939 -9.82649 -9.00472 -7.97264 -6.13310 1.39874 1.43512 1.52354 2.47073 3.06065 3.20526 3.70548 3.83460 3.93091 4.15151 4.22736 4.25892 4.30455 4.32692 4.40947 4.43035 4.53908 4.67028 4.72510 4.78655 4.84787 4.88581 4.95656 4.96895 5.00924 5.02847 5.07891 5.15698 5.18455 5.24894 5.30658 5.34181 5.39713 5.44914 5.48572 5.59914 5.65341 5.68852 5.69903 5.76876 6.00166 6.17366 6.45346 6.85813 7.49558 7.60546 9.04926 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.009703 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.239225 B = 2885.095777 C = 3175.749150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.045 0.955 9 C 0.175 3.825 10 H 0.069 0.931 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.132 4.132 14 C 0.106 3.894 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.105 4.105 18 C -0.130 4.130 19 C -0.056 4.056 20 H 0.074 0.926 21 C -0.203 4.203 22 C -0.173 4.173 23 C -0.192 4.192 24 O -0.368 6.368 25 H 0.255 0.745 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.169 0.831 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -10.380 0.279 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.063 0.937 9 C 0.120 3.880 10 H 0.086 0.914 11 C -0.188 4.188 12 C -0.193 4.193 13 C -0.170 4.170 14 C 0.065 3.935 15 C -0.135 4.135 16 C -0.146 4.146 17 C -0.142 4.142 18 C -0.168 4.168 19 C -0.075 4.075 20 H 0.092 0.908 21 C -0.219 4.219 22 C -0.210 4.210 23 C -0.229 4.229 24 O -0.288 6.288 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.185 0.815 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.093 -10.126 0.138 11.335 hybrid contribution 0.748 1.293 0.050 1.495 sum -4.345 -8.833 0.188 9.845 Atomic orbital electron populations 1.70010 1.06285 1.26101 1.47788 1.25556 0.95578 1.01215 0.93954 0.85830 0.79161 0.81061 0.77353 1.19932 1.21252 1.20456 1.21446 0.92339 0.92234 1.53169 0.93684 1.20746 0.88197 0.91038 0.88002 0.91402 1.22197 0.99366 0.96975 1.00276 1.22600 0.99319 0.96273 1.01117 1.22094 0.98306 0.98722 0.97863 1.21447 0.90791 0.86820 0.94407 1.21478 0.97121 0.98835 0.96053 1.21333 0.97234 0.98343 0.97734 1.21407 0.97122 1.00905 0.94783 1.21820 0.97723 1.01014 0.96219 1.21031 0.95506 0.97915 0.93005 0.90810 1.24406 1.04150 1.03530 0.89843 1.23197 1.03294 0.92151 1.02319 1.22939 1.02052 0.96163 1.01709 1.88241 1.57617 1.37766 1.45128 0.93566 0.94173 0.92591 0.91728 0.86952 0.89877 0.93165 0.92901 0.89395 0.94442 0.91581 0.93164 0.91295 0.89408 0.93541 0.81486 0.88182 0.88130 0.90669 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.53 11.29 21.45 0.24 -48.29 16 2 C 0.04 2.27 5.40 84.66 0.46 2.72 16 3 Si 0.94 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.55 -31.07 8.79 25.60 0.23 -30.85 16 8 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 9 C 0.18 8.62 2.03 29.88 0.06 8.68 16 10 H 0.07 3.42 3.65 -12.74 -0.05 3.37 16 11 C -0.15 -6.30 4.78 30.69 0.15 -6.15 16 12 C -0.16 -5.24 5.58 30.76 0.17 -5.06 16 13 C -0.13 -4.37 4.91 30.73 0.15 -4.22 16 14 C 0.11 3.99 0.68 -10.77 -0.01 3.99 16 15 C -0.10 -3.28 4.94 30.59 0.15 -3.13 16 16 C -0.11 -3.86 5.78 30.59 0.18 -3.69 16 17 C -0.10 -3.49 5.92 30.60 0.18 -3.30 16 18 C -0.13 -4.98 4.30 30.59 0.13 -4.85 16 19 C -0.06 -1.97 1.78 -10.80 -0.02 -1.99 16 20 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 21 C -0.20 -7.19 1.33 -10.79 -0.01 -7.20 16 22 C -0.17 -4.88 9.66 30.59 0.30 -4.59 16 23 C -0.19 -6.71 9.30 30.59 0.28 -6.43 16 24 O -0.37 -18.02 7.95 -148.98 -1.18 -19.21 16 25 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 3.58 3.63 -5.35 -0.02 3.56 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.04 1.67 7.69 -2.39 -0.02 1.65 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 4.17 6.07 -2.39 -0.01 4.16 16 39 H 0.05 1.66 6.32 -2.38 -0.02 1.65 16 40 H 0.17 6.53 1.57 -2.58 0.00 6.52 16 41 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.09 3.07 6.05 -2.38 -0.01 3.05 16 Total: -1.00 -59.73 310.22 4.40 -55.33 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.92 Total: 31.94 kcal Atomic # 6 Polarization: -68.45 SS G_CDS: 2.39 Total: -66.06 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.24 Total: -48.29 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.18 Total: -19.21 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -59.73 4.40 -55.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829186680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.848 kcal (2) G-P(sol) polarization free energy of solvation -59.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds