Wall clock time and date at job start Mon Mar 30 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.82616 * 2 1 4 4 H 1.07996 * 120.00045 * 244.36519 * 3 2 1 5 5 C 1.37880 * 119.99848 * 64.36070 * 3 2 1 6 6 N 1.31511 * 119.99936 * 5.15154 * 5 3 2 7 7 Si 1.86797 * 119.99833 * 185.14941 * 5 3 2 8 8 H 1.48502 * 109.47028 * 85.00219 * 7 5 3 9 9 H 1.48498 * 109.47026 * 204.99717 * 7 5 3 10 10 H 1.48506 * 109.47382 * 325.00327 * 7 5 3 11 11 C 1.54418 * 109.83287 * 239.10571 * 2 1 3 12 12 C 1.55384 * 102.47498 * 219.03798 * 11 2 1 13 13 C 1.55083 * 100.65252 * 33.71429 * 12 11 2 14 14 C 1.52532 * 109.71866 * 83.24701 * 13 12 11 15 15 C 1.53085 * 109.51548 * 180.02562 * 14 13 12 16 16 C 1.52990 * 109.42983 * 300.77365 * 15 14 13 17 17 C 1.53007 * 109.55678 * 60.36933 * 16 15 14 18 18 C 1.52526 * 109.71501 * 204.97573 * 13 12 11 19 19 H 1.09003 * 109.46328 * 299.97049 * 18 13 12 20 20 C 1.52999 * 109.46322 * 59.94281 * 18 13 12 21 21 C 1.52995 * 117.49958 * 248.62104 * 20 18 13 22 22 C 1.52996 * 60.00187 * 252.50933 * 21 20 18 23 23 O 1.43192 * 105.71136 * 324.10769 * 13 12 11 24 24 H 1.09008 * 109.47065 * 175.84864 * 1 2 3 25 25 H 1.08996 * 109.47251 * 295.84170 * 1 2 3 26 26 H 1.08996 * 109.47122 * 55.85127 * 1 2 3 27 27 H 0.96997 * 119.99933 * 180.02562 * 6 5 3 28 28 H 1.08997 * 110.84036 * 337.33968 * 11 2 1 29 29 H 1.08997 * 110.83820 * 100.73538 * 11 2 1 30 30 H 1.08996 * 111.13424 * 151.73142 * 12 11 2 31 31 H 1.09007 * 111.13019 * 275.91050 * 12 11 2 32 32 H 1.08995 * 109.46541 * 300.04182 * 14 13 12 33 33 H 1.09002 * 109.46321 * 60.01347 * 14 13 12 34 34 H 1.09001 * 109.47521 * 180.78166 * 15 14 13 35 35 H 1.09008 * 109.48143 * 60.76488 * 15 14 13 36 36 H 1.08998 * 109.45697 * 300.34410 * 16 15 14 37 37 H 1.09005 * 109.46111 * 180.39612 * 16 15 14 38 38 H 1.09000 * 109.48144 * 179.63667 * 17 16 15 39 39 H 1.08996 * 109.48931 * 59.61404 * 17 16 15 40 40 H 1.08996 * 115.54943 * 34.33204 * 20 18 13 41 41 H 1.08999 * 117.49892 * 0.02562 * 21 20 18 42 42 H 1.08999 * 117.50044 * 145.01919 * 21 20 18 43 43 H 1.08994 * 117.50119 * 252.50876 * 22 21 20 44 44 H 1.08999 * 117.49751 * 107.48659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6049 1.7884 -0.8432 5 6 1.7889 2.2414 1.0765 6 7 1.1913 1.7621 2.1454 7 14 2.2960 4.0382 1.0166 8 1 1.2349 4.8299 0.3439 9 1 2.4896 4.5442 2.3992 10 1 3.5666 4.1690 0.2591 11 6 2.0539 -0.7458 -1.2465 12 6 3.2763 -1.5226 -0.6837 13 6 2.7808 -1.8357 0.7521 14 6 1.9055 -3.0848 0.7335 15 6 1.4185 -3.3891 2.1526 16 6 2.6243 -3.6056 3.0690 17 6 3.4827 -2.3392 3.0937 18 6 3.9769 -2.0316 1.6780 19 1 4.5837 -2.8619 1.3167 20 6 4.8201 -0.7551 1.6984 21 6 6.2057 -0.8133 1.0523 22 6 6.0739 -0.7506 2.5753 23 8 2.0163 -0.6943 1.1559 24 1 -0.3634 -1.0250 -0.0744 25 1 -0.3633 0.4479 0.9249 26 1 -0.3633 0.5769 -0.8504 27 1 1.0135 2.3417 2.9026 28 1 1.3012 -1.4337 -1.6317 29 1 2.3640 -0.0412 -2.0181 30 1 3.4555 -2.4368 -1.2496 31 1 4.1665 -0.8938 -0.6643 32 1 1.0472 -2.9172 0.0830 33 1 2.4851 -3.9289 0.3596 34 1 0.8045 -4.2897 2.1408 35 1 0.8273 -2.5510 2.5216 36 1 3.2186 -4.4398 2.6961 37 1 2.2780 -3.8293 4.0781 38 1 4.3378 -2.4925 3.7520 39 1 2.8870 -1.5033 3.4605 40 1 4.2630 0.1778 1.6122 41 1 6.5164 -1.7609 0.6122 42 1 6.5604 0.0814 0.5405 43 1 6.3419 0.1852 3.0655 44 1 6.2981 -1.6571 3.1375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829187451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:57 Heat of formation + Delta-G solvation = -43.672342 kcal Electronic energy + Delta-G solvation = -22517.091936 eV Core-core repulsion = 19627.064965 eV Total energy + Delta-G solvation = -2890.026971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76297 -36.82459 -35.40352 -32.62721 -30.94682 -30.25519 -29.83601 -27.12446 -25.05992 -23.10851 -22.82479 -21.67730 -20.21031 -19.78171 -19.49089 -18.36364 -16.54449 -15.53154 -14.77484 -14.48981 -14.06990 -13.99948 -13.39545 -13.28622 -13.14943 -12.60483 -12.53037 -12.12965 -11.90711 -11.40960 -11.27330 -11.13696 -11.03017 -10.81480 -10.76223 -10.67248 -10.50580 -10.41893 -10.34469 -10.03383 -9.93163 -9.87781 -9.76728 -9.61385 -9.06672 -8.93428 -8.87591 -8.41280 -7.68684 -5.87246 -4.00281 3.32878 3.40316 3.42456 4.38285 4.48073 4.99938 5.11662 5.30219 5.38205 5.52625 5.54820 5.55539 5.62664 5.76514 5.83591 5.88255 6.00650 6.04171 6.10430 6.14926 6.19755 6.23764 6.26683 6.37128 6.44489 6.47457 6.53186 6.58256 6.61407 6.71568 6.79173 6.87997 6.90288 6.95823 6.98640 7.07461 7.14878 7.20631 7.28751 7.47013 7.86282 8.06371 8.46825 8.75525 9.20655 9.68931 11.15714 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.009574 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.023398 B = 2923.891660 C = 3507.145582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.231 3.769 3 C -0.531 4.531 4 H 0.055 0.945 5 C 0.085 3.915 6 N -0.852 5.852 7 Si 0.876 3.124 8 H -0.281 1.281 9 H -0.288 1.288 10 H -0.276 1.276 11 C -0.143 4.143 12 C -0.142 4.142 13 C 0.113 3.887 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.037 4.037 19 H 0.058 0.942 20 C -0.120 4.120 21 C -0.190 4.190 22 C -0.190 4.190 23 O -0.320 6.320 24 H 0.012 0.988 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.256 0.744 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -8.813 -0.574 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.194 3.806 3 C -0.569 4.569 4 H 0.073 0.927 5 C -0.121 4.121 6 N -0.487 5.487 7 Si 0.704 3.296 8 H -0.207 1.207 9 H -0.214 1.214 10 H -0.201 1.201 11 C -0.180 4.180 12 C -0.179 4.179 13 C 0.072 3.928 14 C -0.163 4.163 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.145 4.145 18 C -0.055 4.055 19 H 0.076 0.924 20 C -0.137 4.137 21 C -0.227 4.227 22 C -0.227 4.227 23 O -0.239 6.239 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.348 -8.704 -0.171 9.731 hybrid contribution 0.380 0.973 -0.307 1.089 sum 4.728 -7.731 -0.478 9.075 Atomic orbital electron populations 1.21957 0.98257 0.97036 1.02013 1.19576 0.90185 0.90538 0.80343 1.21171 1.36714 0.95244 1.03758 0.92668 1.24930 0.94498 0.97363 0.95302 1.70048 1.40157 1.34383 1.04163 0.86891 0.79023 0.86552 0.77105 1.20746 1.21367 1.20106 1.23210 0.96282 0.98293 1.00242 1.23254 0.99378 0.99085 0.96215 1.21657 0.90367 0.88691 0.92076 1.21892 0.99787 0.97647 0.96955 1.21420 0.97340 1.00865 0.95378 1.21488 0.97067 0.97639 0.98909 1.21476 0.98703 0.98112 0.96165 1.20605 0.94728 0.94692 0.95516 0.92409 1.22431 0.88393 1.01545 1.01371 1.22941 1.02569 1.01984 0.95199 1.22859 1.04822 1.02012 0.93022 1.88759 1.68176 1.36141 1.30810 0.96922 0.90714 0.94543 0.93383 0.93539 0.91884 0.92937 0.90463 0.92140 0.93101 0.93548 0.90637 0.93266 0.92880 0.93326 0.90192 0.85143 0.89823 0.89527 0.89611 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.54 37.16 0.32 -2.88 16 2 C 0.23 5.53 0.82 -91.03 -0.07 5.45 16 3 C -0.53 -14.07 8.21 -34.44 -0.28 -14.35 16 4 H 0.06 1.47 7.46 -52.49 -0.39 1.08 16 5 C 0.08 2.28 5.24 -17.82 -0.09 2.19 16 6 N -0.85 -23.74 11.24 55.43 0.62 -23.12 16 7 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 8 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 C -0.14 -2.94 5.67 -24.72 -0.14 -3.08 16 12 C -0.14 -2.66 5.93 -24.36 -0.14 -2.80 16 13 C 0.11 2.17 0.38 -90.00 -0.03 2.14 16 14 C -0.12 -2.16 4.83 -26.93 -0.13 -2.29 16 15 C -0.11 -1.86 5.82 -26.69 -0.16 -2.01 16 16 C -0.11 -1.72 5.91 -26.73 -0.16 -1.88 16 17 C -0.11 -1.83 4.93 -26.69 -0.13 -1.96 16 18 C -0.04 -0.65 1.76 -90.82 -0.16 -0.81 16 19 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 20 C -0.12 -2.20 3.82 -90.62 -0.35 -2.55 16 21 C -0.19 -2.99 9.59 -26.74 -0.26 -3.25 16 22 C -0.19 -3.00 9.74 -26.73 -0.26 -3.26 16 23 O -0.32 -7.52 7.38 -35.23 -0.26 -7.78 16 24 H 0.01 0.26 7.95 -51.92 -0.41 -0.15 16 25 H 0.07 1.96 6.76 -51.93 -0.35 1.61 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.05 0.89 7.47 -51.93 -0.39 0.50 16 29 H 0.06 1.30 7.59 -51.93 -0.39 0.91 16 30 H 0.05 0.86 8.01 -51.93 -0.42 0.45 16 31 H 0.08 1.50 6.36 -51.93 -0.33 1.17 16 32 H 0.06 1.09 7.37 -51.93 -0.38 0.71 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.45 7.85 -51.92 -0.41 1.05 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 39 H 0.08 1.62 7.85 -51.93 -0.41 1.22 16 40 H 0.13 3.02 7.47 -51.93 -0.39 2.63 16 41 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.21 7.61 -51.93 -0.40 0.82 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -26.93 329.02 -9.72 -36.65 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.97 Total: 4.68 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: -2.05 Total: -31.34 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.62 Total: -23.12 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.26 Total: -7.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.93 -9.72 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.025 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds