Wall clock time and date at job start Mon Mar 30 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.82616 * 2 1 4 4 H 1.07996 * 120.00045 * 244.36519 * 3 2 1 5 5 C 1.37880 * 119.99848 * 64.36070 * 3 2 1 6 6 N 1.31511 * 119.99936 * 5.15154 * 5 3 2 7 7 Si 1.86797 * 119.99833 * 185.14941 * 5 3 2 8 8 H 1.48502 * 109.47028 * 85.00219 * 7 5 3 9 9 H 1.48498 * 109.47026 * 204.99717 * 7 5 3 10 10 H 1.48506 * 109.47382 * 325.00327 * 7 5 3 11 11 C 1.54418 * 109.83287 * 239.10571 * 2 1 3 12 12 C 1.55384 * 102.47498 * 219.03798 * 11 2 1 13 13 C 1.55083 * 100.65252 * 33.71429 * 12 11 2 14 14 C 1.52532 * 109.71866 * 83.24701 * 13 12 11 15 15 C 1.53085 * 109.51548 * 180.02562 * 14 13 12 16 16 C 1.52990 * 109.42983 * 300.77365 * 15 14 13 17 17 C 1.53007 * 109.55678 * 60.36933 * 16 15 14 18 18 C 1.52526 * 109.71501 * 204.97573 * 13 12 11 19 19 H 1.09003 * 109.46328 * 299.97049 * 18 13 12 20 20 C 1.52999 * 109.46322 * 59.94281 * 18 13 12 21 21 C 1.52995 * 117.49958 * 248.62104 * 20 18 13 22 22 C 1.52996 * 60.00187 * 252.50933 * 21 20 18 23 23 O 1.43192 * 105.71136 * 324.10769 * 13 12 11 24 24 H 1.09008 * 109.47065 * 175.84864 * 1 2 3 25 25 H 1.08996 * 109.47251 * 295.84170 * 1 2 3 26 26 H 1.08996 * 109.47122 * 55.85127 * 1 2 3 27 27 H 0.96997 * 119.99933 * 180.02562 * 6 5 3 28 28 H 1.08997 * 110.84036 * 337.33968 * 11 2 1 29 29 H 1.08997 * 110.83820 * 100.73538 * 11 2 1 30 30 H 1.08996 * 111.13424 * 151.73142 * 12 11 2 31 31 H 1.09007 * 111.13019 * 275.91050 * 12 11 2 32 32 H 1.08995 * 109.46541 * 300.04182 * 14 13 12 33 33 H 1.09002 * 109.46321 * 60.01347 * 14 13 12 34 34 H 1.09001 * 109.47521 * 180.78166 * 15 14 13 35 35 H 1.09008 * 109.48143 * 60.76488 * 15 14 13 36 36 H 1.08998 * 109.45697 * 300.34410 * 16 15 14 37 37 H 1.09005 * 109.46111 * 180.39612 * 16 15 14 38 38 H 1.09000 * 109.48144 * 179.63667 * 17 16 15 39 39 H 1.08996 * 109.48931 * 59.61404 * 17 16 15 40 40 H 1.08996 * 115.54943 * 34.33204 * 20 18 13 41 41 H 1.08999 * 117.49892 * 0.02562 * 21 20 18 42 42 H 1.08999 * 117.50044 * 145.01919 * 21 20 18 43 43 H 1.08994 * 117.50119 * 252.50876 * 22 21 20 44 44 H 1.08999 * 117.49751 * 107.48659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6049 1.7884 -0.8432 5 6 1.7889 2.2414 1.0765 6 7 1.1913 1.7621 2.1454 7 14 2.2960 4.0382 1.0166 8 1 1.2349 4.8299 0.3439 9 1 2.4896 4.5442 2.3992 10 1 3.5666 4.1690 0.2591 11 6 2.0539 -0.7458 -1.2465 12 6 3.2763 -1.5226 -0.6837 13 6 2.7808 -1.8357 0.7521 14 6 1.9055 -3.0848 0.7335 15 6 1.4185 -3.3891 2.1526 16 6 2.6243 -3.6056 3.0690 17 6 3.4827 -2.3392 3.0937 18 6 3.9769 -2.0316 1.6780 19 1 4.5837 -2.8619 1.3167 20 6 4.8201 -0.7551 1.6984 21 6 6.2057 -0.8133 1.0523 22 6 6.0739 -0.7506 2.5753 23 8 2.0163 -0.6943 1.1559 24 1 -0.3634 -1.0250 -0.0744 25 1 -0.3633 0.4479 0.9249 26 1 -0.3633 0.5769 -0.8504 27 1 1.0135 2.3417 2.9026 28 1 1.3012 -1.4337 -1.6317 29 1 2.3640 -0.0412 -2.0181 30 1 3.4555 -2.4368 -1.2496 31 1 4.1665 -0.8938 -0.6643 32 1 1.0472 -2.9172 0.0830 33 1 2.4851 -3.9289 0.3596 34 1 0.8045 -4.2897 2.1408 35 1 0.8273 -2.5510 2.5216 36 1 3.2186 -4.4398 2.6961 37 1 2.2780 -3.8293 4.0781 38 1 4.3378 -2.4925 3.7520 39 1 2.8870 -1.5033 3.4605 40 1 4.2630 0.1778 1.6122 41 1 6.5164 -1.7609 0.6122 42 1 6.5604 0.0814 0.5405 43 1 6.3419 0.1852 3.0655 44 1 6.2981 -1.6571 3.1375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:56 Heat of formation + Delta-G solvation = -55.646302 kcal Electronic energy + Delta-G solvation = -22517.611166 eV Core-core repulsion = 19627.064965 eV Total energy + Delta-G solvation = -2890.546200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26207 -38.33076 -36.78541 -34.54985 -32.60870 -31.95695 -31.20345 -28.69950 -27.10927 -24.52796 -24.29655 -22.97538 -21.65284 -21.44572 -20.92010 -19.91102 -18.42998 -17.02185 -16.46153 -16.20627 -15.57274 -15.46555 -14.85103 -14.74878 -14.68387 -14.38664 -13.91667 -13.63522 -13.48994 -13.23972 -13.00755 -12.74232 -12.52653 -12.43540 -12.33756 -12.23035 -12.19768 -12.00350 -11.84365 -11.68120 -11.57920 -11.31227 -11.15750 -11.04230 -10.72536 -10.54785 -10.49410 -10.24090 -9.43466 -7.94011 -6.11888 1.37881 1.40329 1.46993 2.46107 3.06501 3.23728 3.63223 3.78799 3.93827 4.13996 4.20474 4.22735 4.27104 4.31778 4.43688 4.45672 4.63878 4.66528 4.77917 4.80601 4.84382 4.87944 4.92859 4.97254 5.02902 5.04020 5.08711 5.13772 5.17517 5.21841 5.29393 5.34292 5.35975 5.43087 5.49428 5.54431 5.61335 5.69161 5.74243 5.78803 5.90516 6.10176 6.46129 6.79462 7.38528 7.63457 9.07205 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.009574 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.023398 B = 2923.891660 C = 3507.145582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.221 3.779 3 C -0.541 4.541 4 H 0.045 0.955 5 C 0.043 3.957 6 N -0.877 5.877 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.274 1.274 11 C -0.139 4.139 12 C -0.134 4.134 13 C 0.101 3.899 14 C -0.122 4.122 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.103 4.103 18 C -0.031 4.031 19 H 0.086 0.914 20 C -0.143 4.143 21 C -0.173 4.173 22 C -0.178 4.178 23 O -0.345 6.345 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.252 0.748 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -11.286 -1.195 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.183 3.817 3 C -0.579 4.579 4 H 0.063 0.937 5 C -0.160 4.160 6 N -0.514 5.514 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.199 1.199 11 C -0.177 4.177 12 C -0.171 4.171 13 C 0.061 3.939 14 C -0.160 4.160 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.049 4.049 19 H 0.104 0.896 20 C -0.162 4.162 21 C -0.210 4.210 22 C -0.215 4.215 23 O -0.264 6.264 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.003 -11.172 -0.803 12.708 hybrid contribution -0.135 1.759 -0.117 1.768 sum 5.868 -9.413 -0.921 11.130 Atomic orbital electron populations 1.21852 0.98729 0.97666 1.00244 1.19569 0.89956 0.90013 0.82196 1.21480 1.36076 0.97180 1.03148 0.93663 1.25503 0.94797 1.00509 0.95175 1.70184 1.41522 1.35177 1.04544 0.86069 0.78734 0.82874 0.76823 1.20240 1.21532 1.19880 1.23119 0.97579 0.98407 0.98602 1.23222 0.97852 0.99889 0.96150 1.21988 0.91023 0.88221 0.92714 1.21869 0.99389 0.97530 0.97195 1.21387 0.97916 1.00276 0.95278 1.21469 0.96351 0.97294 0.99401 1.21418 0.98978 0.97445 0.96233 1.20597 0.94109 0.94878 0.95359 0.89610 1.22111 0.89365 0.99719 1.04995 1.23003 0.99723 1.03045 0.95199 1.22929 1.02256 1.02870 0.93441 1.88714 1.68935 1.37911 1.30877 0.95226 0.93954 0.94440 0.93909 0.91956 0.92530 0.89671 0.91609 0.93304 0.89967 0.91122 0.94710 0.90373 0.91856 0.91510 0.94920 0.90887 0.87272 0.90031 0.90145 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.54 71.98 0.62 -5.57 16 2 C 0.22 10.79 0.82 -11.06 -0.01 10.78 16 3 C -0.54 -29.63 8.21 25.60 0.21 -29.42 16 4 H 0.05 2.49 7.46 -2.91 -0.02 2.47 16 5 C 0.04 2.40 5.24 84.66 0.44 2.84 16 6 N -0.88 -51.30 11.24 21.45 0.24 -51.06 16 7 Si 0.93 44.46 29.54 68.60 2.03 46.49 16 8 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 11 C -0.14 -5.65 5.67 31.90 0.18 -5.47 16 12 C -0.13 -4.76 5.93 32.13 0.19 -4.57 16 13 C 0.10 3.75 0.38 -10.39 0.00 3.75 16 14 C -0.12 -3.90 4.83 30.47 0.15 -3.76 16 15 C -0.11 -3.47 5.82 30.62 0.18 -3.29 16 16 C -0.11 -2.96 5.91 30.59 0.18 -2.78 16 17 C -0.10 -3.38 4.93 30.62 0.15 -3.23 16 18 C -0.03 -1.03 1.76 -10.92 -0.02 -1.05 16 19 H 0.09 2.39 7.90 -2.39 -0.02 2.37 16 20 C -0.14 -5.23 3.82 -10.80 -0.04 -5.28 16 21 C -0.17 -5.08 9.59 30.59 0.29 -4.78 16 22 C -0.18 -5.31 9.74 30.59 0.30 -5.01 16 23 O -0.35 -16.67 7.38 -148.98 -1.10 -17.76 16 24 H 0.03 1.28 7.95 -2.38 -0.02 1.26 16 25 H 0.04 2.30 6.76 -2.39 -0.02 2.29 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.06 2.29 7.47 -2.39 -0.02 2.27 16 29 H 0.06 2.32 7.59 -2.39 -0.02 2.30 16 30 H 0.08 2.46 8.01 -2.39 -0.02 2.44 16 31 H 0.07 2.48 6.36 -2.38 -0.02 2.46 16 32 H 0.05 1.66 7.37 -2.39 -0.02 1.64 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.03 1.35 7.85 -2.38 -0.02 1.34 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.07 1.91 7.31 -2.39 -0.02 1.89 16 39 H 0.03 1.36 7.85 -2.39 -0.02 1.34 16 40 H 0.07 3.55 7.47 -2.39 -0.02 3.54 16 41 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.11 2.71 7.61 -2.39 -0.02 2.69 16 Total: -1.00 -61.29 329.02 4.92 -56.37 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.94 Total: 22.81 kcal Atomic # 6 Polarization: -59.66 SS G_CDS: 2.82 Total: -56.84 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.24 Total: -51.06 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.10 Total: -17.76 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -61.29 4.92 -56.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.720 kcal (2) G-P(sol) polarization free energy of solvation -61.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds