Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.86152 * 2 1 4 4 H 1.08000 * 120.00458 * 244.44481 * 3 2 1 5 5 C 1.37878 * 120.00338 * 64.44630 * 3 2 1 6 6 N 1.31517 * 119.99540 * 355.15683 * 5 3 2 7 7 Si 1.86795 * 120.00377 * 175.15001 * 5 3 2 8 8 H 1.48505 * 109.46799 * 95.00338 * 7 5 3 9 9 H 1.48497 * 109.47432 * 214.99869 * 7 5 3 10 10 H 1.48494 * 109.47284 * 335.00503 * 7 5 3 11 11 C 1.54138 * 109.86558 * 239.02140 * 2 1 3 12 12 C 1.54904 * 104.21093 * 238.51879 * 11 2 1 13 13 C 1.54440 * 102.03230 * 339.65404 * 12 11 2 14 14 C 1.52317 * 110.08162 * 277.62762 * 13 12 11 15 15 C 1.53100 * 109.58848 * 179.57590 * 14 13 12 16 16 C 1.53005 * 109.40984 * 58.96060 * 15 14 13 17 17 C 1.53012 * 109.51952 * 299.44882 * 16 15 14 18 18 C 1.52321 * 110.04735 * 154.92916 * 13 12 11 19 19 H 1.09000 * 109.46964 * 60.40847 * 18 13 12 20 20 C 1.52995 * 109.44814 * 300.47760 * 18 13 12 21 21 C 1.52994 * 117.50180 * 243.31413 * 20 18 13 22 22 C 1.52995 * 60.00297 * 252.51117 * 21 20 18 23 23 O 1.43703 * 104.27139 * 36.27099 * 13 12 11 24 24 H 1.08994 * 109.46838 * 185.92268 * 1 2 3 25 25 H 1.09005 * 109.46572 * 305.91726 * 1 2 3 26 26 H 1.08993 * 109.47793 * 65.91442 * 1 2 3 27 27 H 0.97002 * 120.00081 * 180.02562 * 6 5 3 28 28 H 1.08999 * 110.48871 * 119.83931 * 11 2 1 29 29 H 1.08997 * 110.59680 * 357.25489 * 11 2 1 30 30 H 1.09000 * 110.92130 * 221.46636 * 12 11 2 31 31 H 1.09003 * 110.94878 * 97.84688 * 12 11 2 32 32 H 1.08999 * 109.44823 * 59.54232 * 14 13 12 33 33 H 1.09001 * 109.44684 * 299.60449 * 14 13 12 34 34 H 1.09007 * 109.48145 * 178.93924 * 15 14 13 35 35 H 1.08994 * 109.48104 * 298.97618 * 15 14 13 36 36 H 1.09001 * 109.46237 * 59.46400 * 16 15 14 37 37 H 1.09004 * 109.46403 * 179.42836 * 16 15 14 38 38 H 1.09003 * 109.47917 * 180.53196 * 17 16 15 39 39 H 1.09002 * 109.48273 * 300.57394 * 17 16 15 40 40 H 1.09004 * 115.54730 * 29.02473 * 20 18 13 41 41 H 1.09005 * 117.49704 * 0.02562 * 21 20 18 42 42 H 1.09002 * 117.50145 * 145.01888 * 21 20 18 43 43 H 1.09001 * 117.50004 * 252.51401 * 22 21 20 44 44 H 1.08992 * 117.50485 * 107.48458 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4173 0.0000 4 1 2.6049 1.7882 -0.8438 5 6 1.7918 2.2407 1.0772 6 7 1.0268 1.8217 2.0614 7 14 2.5396 3.9514 1.1388 8 1 1.5633 4.9377 0.6103 9 1 2.8776 4.2936 2.5438 10 1 3.7722 3.9829 0.3114 11 6 2.0538 -0.7462 -1.2429 12 6 2.9205 -1.8910 -0.6619 13 6 3.2261 -1.3734 0.7607 14 6 4.3982 -0.4014 0.7230 15 6 4.6846 0.1126 2.1365 16 6 5.0055 -1.0703 3.0523 17 6 3.8066 -2.0199 3.1001 18 6 3.5163 -2.5439 1.6912 19 1 4.3820 -3.0946 1.3232 20 6 2.3022 -3.4739 1.7338 21 6 1.5854 -3.6391 3.0753 22 6 2.4398 -4.7798 2.5190 23 8 2.0218 -0.6976 1.1581 24 1 -0.3633 -1.0221 0.1060 25 1 -0.3633 0.6029 0.8323 26 1 -0.3634 0.4193 -0.9381 27 1 0.8504 2.4011 2.8192 28 1 2.6612 -0.0827 -1.8584 29 1 1.2256 -1.1519 -1.8238 30 1 3.8384 -2.0145 -1.2367 31 1 2.3588 -2.8244 -0.6240 32 1 4.1520 0.4391 0.0741 33 1 5.2806 -0.9117 0.3367 34 1 5.5355 0.7934 2.1103 35 1 3.8090 0.6392 2.5161 36 1 5.8752 -1.6025 2.6669 37 1 5.2194 -0.7045 4.0566 38 1 4.0324 -2.8575 3.7601 39 1 2.9342 -1.4854 3.4761 40 1 1.6915 -3.4914 0.8310 41 1 1.9787 -3.0848 3.9276 42 1 0.5029 -3.7651 3.0555 43 1 1.9194 -5.6564 2.1330 44 1 3.3953 -4.9764 3.0051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = -47.764345 kcal Electronic energy + Delta-G solvation = -22670.272522 eV Core-core repulsion = 19780.068109 eV Total energy + Delta-G solvation = -2890.204413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38305 -38.56568 -36.50988 -34.61721 -32.59716 -31.99541 -31.00077 -28.61960 -27.21923 -24.82327 -24.27059 -23.14062 -21.74536 -21.36235 -20.64346 -19.64777 -18.29748 -17.08674 -16.63803 -16.18816 -15.66197 -15.50722 -15.16742 -14.83278 -14.51221 -14.14944 -13.94704 -13.55831 -13.37526 -13.16688 -12.91429 -12.79554 -12.50937 -12.42610 -12.31512 -12.24096 -12.12504 -12.06527 -11.88256 -11.59763 -11.50900 -11.28284 -11.11786 -10.85947 -10.72573 -10.55903 -10.41262 -10.28490 -9.52308 -7.91044 -6.07024 1.36745 1.41501 1.47634 2.47325 3.09278 3.27343 3.61677 3.81924 3.98596 4.16164 4.19535 4.24522 4.28924 4.34729 4.38182 4.45853 4.67286 4.71318 4.78099 4.82241 4.88457 4.90184 4.96606 5.02350 5.04420 5.08114 5.08592 5.18189 5.20751 5.20872 5.25869 5.38517 5.41187 5.48627 5.51253 5.53388 5.61095 5.66874 5.77687 5.83588 5.98674 6.18039 6.44909 6.84350 7.24435 7.64741 9.08720 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.009005 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.922615 B = 3108.617503 C = 3501.821998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.217 3.783 3 C -0.535 4.535 4 H 0.044 0.956 5 C 0.051 3.949 6 N -0.879 5.879 7 Si 0.917 3.083 8 H -0.281 1.281 9 H -0.290 1.290 10 H -0.271 1.271 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.114 3.886 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.102 4.102 18 C -0.036 4.036 19 H 0.090 0.910 20 C -0.143 4.143 21 C -0.190 4.190 22 C -0.162 4.162 23 O -0.349 6.349 24 H 0.023 0.977 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.251 0.749 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -10.957 -0.358 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.178 3.822 3 C -0.573 4.573 4 H 0.062 0.938 5 C -0.151 4.151 6 N -0.517 5.517 7 Si 0.745 3.255 8 H -0.207 1.207 9 H -0.216 1.216 10 H -0.196 1.196 11 C -0.178 4.178 12 C -0.180 4.180 13 C 0.073 3.927 14 C -0.162 4.162 15 C -0.146 4.146 16 C -0.147 4.147 17 C -0.139 4.139 18 C -0.054 4.054 19 H 0.108 0.892 20 C -0.161 4.161 21 C -0.227 4.227 22 C -0.199 4.199 23 O -0.268 6.268 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.120 0.880 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.068 -10.902 0.022 12.477 hybrid contribution -0.022 1.719 -0.102 1.722 sum 6.046 -9.182 -0.080 10.994 Atomic orbital electron populations 1.21683 0.97700 0.98213 1.00442 1.19564 0.90675 0.89794 0.82119 1.21579 1.35154 0.97622 1.02983 0.93823 1.25343 0.94681 0.99423 0.95673 1.70088 1.36411 1.36327 1.08887 0.86202 0.79340 0.83011 0.76974 1.20743 1.21571 1.19565 1.22994 0.98966 0.97073 0.98768 1.23147 0.99975 0.98127 0.96748 1.21688 0.87567 0.90991 0.92437 1.21813 0.97412 0.99733 0.97261 1.21312 0.99522 0.97667 0.96146 1.21501 0.98142 0.96135 0.98949 1.21536 0.97586 0.98292 0.96479 1.20508 0.96425 0.93272 0.95181 0.89179 1.22213 0.99830 0.98398 0.95701 1.22979 0.98263 1.03368 0.98080 1.23035 1.01757 0.91750 1.03354 1.88938 1.37554 1.65819 1.34477 0.95760 0.92673 0.94255 0.93909 0.92722 0.92289 0.90329 0.90459 0.92229 0.91615 0.93330 0.94516 0.90633 0.92404 0.90973 0.94063 0.88997 0.89173 0.90161 0.88001 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.55 71.98 0.62 -5.36 16 2 C 0.22 10.43 0.70 -11.16 -0.01 10.43 16 3 C -0.54 -28.39 5.88 25.60 0.15 -28.24 16 4 H 0.04 2.34 7.31 -2.91 -0.02 2.32 16 5 C 0.05 2.78 5.26 84.65 0.45 3.23 16 6 N -0.88 -50.31 11.01 21.45 0.24 -50.07 16 7 Si 0.92 43.72 29.54 68.60 2.03 45.75 16 8 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 C -0.14 -5.64 5.91 31.63 0.19 -5.46 16 12 C -0.14 -4.91 5.88 31.73 0.19 -4.72 16 13 C 0.11 4.30 0.40 -10.76 0.00 4.29 16 14 C -0.12 -4.79 4.47 30.40 0.14 -4.65 16 15 C -0.11 -4.22 5.83 30.63 0.18 -4.04 16 16 C -0.11 -3.42 5.91 30.60 0.18 -3.24 16 17 C -0.10 -3.26 3.68 30.63 0.11 -3.15 16 18 C -0.04 -1.12 1.92 -10.99 -0.02 -1.15 16 19 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 20 C -0.14 -4.35 4.97 -10.80 -0.05 -4.41 16 21 C -0.19 -5.68 9.50 30.59 0.29 -5.39 16 22 C -0.16 -3.83 9.96 30.59 0.30 -3.52 16 23 O -0.35 -16.58 8.44 -148.98 -1.26 -17.84 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 3.02 6.17 -2.38 -0.01 3.01 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.05 2.23 7.40 -2.39 -0.02 2.21 16 29 H 0.06 2.20 7.70 -2.39 -0.02 2.19 16 30 H 0.08 2.36 8.02 -2.39 -0.02 2.34 16 31 H 0.08 2.46 5.85 -2.39 -0.01 2.44 16 32 H 0.06 2.66 5.61 -2.39 -0.01 2.65 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.04 1.77 7.90 -2.39 -0.02 1.75 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.07 1.94 7.27 -2.39 -0.02 1.92 16 39 H 0.04 1.65 6.93 -2.39 -0.02 1.63 16 40 H 0.09 3.00 6.09 -2.39 -0.01 2.99 16 41 H 0.09 2.82 5.81 -2.38 -0.01 2.81 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.10 2.13 7.95 -2.39 -0.02 2.11 16 Total: -1.00 -58.98 320.72 4.66 -54.32 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.96 Total: 23.23 kcal Atomic # 6 Polarization: -58.09 SS G_CDS: 2.70 Total: -55.39 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.24 Total: -50.07 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.26 Total: -17.84 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -58.98 4.66 -54.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.553 kcal (2) G-P(sol) polarization free energy of solvation -58.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds