Wall clock time and date at job start Mon Mar 30 2020 07:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.82481 * 2 1 4 4 H 1.08002 * 119.99890 * 117.62819 * 3 2 1 5 5 C 1.37873 * 120.00201 * 297.63533 * 3 2 1 6 6 N 1.31516 * 119.99972 * 191.12553 * 5 3 2 7 7 Si 1.86802 * 120.00182 * 11.11562 * 5 3 2 8 8 H 1.48501 * 109.46605 * 84.86750 * 7 5 3 9 9 H 1.48498 * 109.47242 * 204.86499 * 7 5 3 10 10 H 1.48501 * 109.47081 * 324.86807 * 7 5 3 11 11 C 1.54415 * 109.90869 * 239.06215 * 2 1 3 12 12 C 1.55368 * 102.28896 * 219.09220 * 11 2 1 13 13 C 1.54565 * 100.89425 * 33.72769 * 12 11 2 14 14 C 1.52526 * 109.69010 * 83.20645 * 13 12 11 15 15 C 1.53078 * 109.51018 * 62.26444 * 14 13 12 16 16 C 1.53001 * 109.42687 * 59.22832 * 15 14 13 17 17 C 1.53001 * 109.56396 * 299.63724 * 16 15 14 18 18 C 1.52523 * 109.68523 * 204.89947 * 13 12 11 19 19 H 1.09007 * 109.46646 * 177.73707 * 18 13 12 20 20 C 1.52995 * 109.47040 * 57.74989 * 18 13 12 21 21 C 1.52995 * 117.50389 * 128.74632 * 20 18 13 22 22 C 1.53001 * 117.49999 * 60.08339 * 20 18 13 23 23 O 1.43172 * 105.65905 * 324.06095 * 13 12 11 24 24 H 1.08998 * 109.47252 * 59.33095 * 1 2 3 25 25 H 1.08996 * 109.46841 * 179.33776 * 1 2 3 26 26 H 1.09000 * 109.46679 * 299.32857 * 1 2 3 27 27 H 0.97004 * 120.00013 * 179.97438 * 6 5 3 28 28 H 1.09005 * 110.84090 * 337.29271 * 11 2 1 29 29 H 1.08999 * 110.84062 * 100.88717 * 11 2 1 30 30 H 1.09000 * 111.13218 * 275.82204 * 12 11 2 31 31 H 1.08995 * 111.13689 * 151.63703 * 12 11 2 32 32 H 1.08999 * 109.46335 * 182.27528 * 14 13 12 33 33 H 1.08994 * 109.46671 * 302.24976 * 14 13 12 34 34 H 1.09003 * 109.47880 * 299.24096 * 15 14 13 35 35 H 1.08999 * 109.48899 * 179.21968 * 15 14 13 36 36 H 1.08999 * 109.45202 * 179.60770 * 16 15 14 37 37 H 1.08996 * 109.45333 * 59.67092 * 16 15 14 38 38 H 1.09003 * 109.47779 * 300.38663 * 17 16 15 39 39 H 1.08993 * 109.47942 * 180.35476 * 17 16 15 40 40 H 1.09009 * 115.54877 * 274.41617 * 20 18 13 41 41 H 1.09006 * 117.49734 * 0.02562 * 21 20 18 42 42 H 1.09002 * 117.50406 * 145.01909 * 21 20 18 43 43 H 1.08997 * 117.50124 * 214.98148 * 22 20 18 44 44 H 1.08998 * 117.49889 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0412 1.4177 0.0000 4 1 2.6323 1.7786 0.8287 5 6 1.7540 2.2541 -1.0578 6 7 2.3722 3.4095 -1.1692 7 14 0.4869 1.7460 -2.3329 8 1 -0.8705 2.1131 -1.8553 9 1 0.7664 2.4436 -3.6137 10 1 0.5575 0.2777 -2.5432 11 6 2.0559 -0.7464 -1.2453 12 6 3.2763 -1.5211 -0.6757 13 6 2.7822 -1.8334 0.7551 14 6 1.9089 -3.0837 0.7358 15 6 2.7394 -4.2802 0.2645 16 6 3.9247 -4.4812 1.2109 17 6 4.8023 -3.2279 1.2062 18 6 3.9787 -2.0280 1.6808 19 1 3.6265 -2.2082 2.6966 20 6 4.8502 -0.7708 1.6589 21 6 5.2305 -0.1511 3.0051 22 6 4.2059 0.5434 2.1046 23 8 2.0164 -0.6924 1.1572 24 1 -0.3634 0.5242 -0.8839 25 1 -0.3633 -1.0276 -0.0119 26 1 -0.3633 0.5034 0.8960 27 1 2.1704 3.9978 -1.9136 28 1 1.3043 -1.4357 -1.6304 29 1 2.3688 -0.0422 -2.0161 30 1 4.1664 -0.8922 -0.6556 31 1 3.4574 -2.4373 -1.2377 32 1 1.5297 -3.2774 1.7391 33 1 1.0719 -2.9316 0.0544 34 1 3.1074 -4.0925 -0.7442 35 1 2.1187 -5.1761 0.2641 36 1 4.5124 -5.3373 0.8797 37 1 3.5563 -4.6628 2.2205 38 1 5.1657 -3.0424 0.1954 39 1 5.6496 -3.3750 1.8759 40 1 5.5871 -0.7235 0.8570 41 1 4.8601 -0.6395 3.9065 42 1 6.2174 0.3041 3.0888 43 1 4.5190 1.4553 1.5963 44 1 3.1609 0.5124 2.4130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:03 Heat of formation + Delta-G solvation = -38.744124 kcal Electronic energy + Delta-G solvation = -22569.091119 eV Core-core repulsion = 19679.277852 eV Total energy + Delta-G solvation = -2889.813267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72177 -38.41106 -37.09328 -34.93281 -32.89919 -32.11813 -31.47102 -29.07287 -27.09347 -24.52560 -24.16343 -23.06374 -22.86243 -21.60685 -21.06337 -19.47860 -18.20316 -17.35247 -17.03795 -16.46974 -15.78157 -15.67390 -15.33260 -14.64566 -14.54445 -14.38712 -14.22905 -14.03114 -13.89254 -13.64177 -13.19497 -12.98863 -12.76484 -12.58959 -12.27353 -12.17394 -12.15549 -11.89561 -11.79637 -11.63416 -11.43401 -11.32448 -11.14172 -11.01590 -10.77474 -10.71005 -10.60675 -10.42683 -9.67184 -8.23996 -6.22110 1.31001 1.34456 1.43767 2.34358 3.00353 3.07481 3.24511 3.73721 3.87071 4.06113 4.10327 4.17695 4.25884 4.28252 4.32863 4.37345 4.50329 4.51783 4.58535 4.67054 4.70952 4.74832 4.77481 4.85009 4.90403 4.91717 4.99092 5.05585 5.07310 5.18986 5.24527 5.28796 5.37479 5.38178 5.40057 5.44852 5.49279 5.56773 5.59162 5.68249 5.71580 5.81943 6.31004 6.78076 6.94002 7.42781 8.91965 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.008916 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.794133 B = 3139.666399 C = 3882.313473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.207 3.793 3 C -0.506 4.506 4 H 0.058 0.942 5 C 0.018 3.982 6 N -0.946 5.946 7 Si 0.921 3.079 8 H -0.283 1.283 9 H -0.310 1.310 10 H -0.217 1.217 11 C -0.146 4.146 12 C -0.131 4.131 13 C 0.114 3.886 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.039 4.039 19 H 0.066 0.934 20 C -0.137 4.137 21 C -0.176 4.176 22 C -0.163 4.163 23 O -0.373 6.373 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -17.687 2.923 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.167 3.833 3 C -0.544 4.544 4 H 0.076 0.924 5 C -0.179 4.179 6 N -0.587 5.587 7 Si 0.750 3.250 8 H -0.211 1.211 9 H -0.239 1.239 10 H -0.140 1.140 11 C -0.184 4.184 12 C -0.168 4.168 13 C 0.075 3.925 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.058 4.058 19 H 0.084 0.916 20 C -0.155 4.155 21 C -0.212 4.212 22 C -0.200 4.200 23 O -0.293 6.293 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.886 -17.485 3.042 17.981 hybrid contribution -0.730 1.211 -0.946 1.702 sum 2.157 -16.274 2.096 16.549 Atomic orbital electron populations 1.22426 0.98052 1.00503 1.00256 1.19825 0.89969 0.90593 0.82880 1.21586 1.31660 0.95745 1.05434 0.92389 1.25613 0.97663 0.95023 0.99556 1.70067 1.43221 1.12667 1.32713 0.86581 0.79491 0.81145 0.77764 1.21057 1.23876 1.14002 1.23480 0.97953 0.98483 0.98500 1.23194 0.97617 0.99871 0.96152 1.21878 0.90713 0.86539 0.93362 1.21872 0.98344 0.94646 1.01598 1.21599 0.97024 0.96959 0.99615 1.21531 0.96329 0.97368 0.99948 1.21559 0.97903 0.93044 1.01758 1.20670 0.92978 0.93460 0.98669 0.91607 1.22137 1.01580 0.94212 0.97547 1.23104 0.99770 1.04407 0.93965 1.22763 0.98428 0.95196 1.03592 1.88263 1.69821 1.40072 1.31109 0.94138 0.91950 0.93427 0.93004 0.91426 0.92928 0.92247 0.88784 0.91904 0.92578 0.91503 0.90415 0.90006 0.91748 0.91764 0.90495 0.89033 0.88319 0.88624 0.92706 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.64 8.20 71.98 0.59 -6.05 16 2 C 0.21 9.44 0.95 -11.06 -0.01 9.43 16 3 C -0.51 -28.33 8.54 25.60 0.22 -28.12 16 4 H 0.06 3.60 5.32 -2.91 -0.02 3.58 16 5 C 0.02 1.03 5.16 84.65 0.44 1.47 16 6 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 7 Si 0.92 44.13 22.75 68.60 1.56 45.69 16 8 H -0.28 -13.41 7.01 99.48 0.70 -12.72 16 9 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 10 H -0.22 -9.11 4.74 99.48 0.47 -8.64 16 11 C -0.15 -5.95 3.70 31.89 0.12 -5.83 16 12 C -0.13 -4.55 4.72 31.94 0.15 -4.40 16 13 C 0.11 3.80 0.60 -10.58 -0.01 3.79 16 14 C -0.13 -3.46 5.08 30.46 0.15 -3.31 16 15 C -0.11 -2.32 5.71 30.62 0.17 -2.14 16 16 C -0.11 -2.07 5.91 30.60 0.18 -1.89 16 17 C -0.11 -2.30 4.99 30.62 0.15 -2.15 16 18 C -0.04 -1.15 2.00 -10.92 -0.02 -1.17 16 19 H 0.07 1.96 7.90 -2.38 -0.02 1.94 16 20 C -0.14 -4.55 3.91 -10.80 -0.04 -4.59 16 21 C -0.18 -5.44 10.18 30.62 0.31 -5.13 16 22 C -0.16 -6.66 7.38 30.62 0.23 -6.44 16 23 O -0.37 -15.87 6.97 -148.98 -1.04 -16.91 16 24 H 0.04 1.76 2.90 -2.39 -0.01 1.75 16 25 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 28 H 0.07 2.45 7.19 -2.38 -0.02 2.43 16 29 H 0.05 2.36 5.49 -2.39 -0.01 2.35 16 30 H 0.06 2.29 6.39 -2.39 -0.02 2.27 16 31 H 0.09 2.65 5.81 -2.39 -0.01 2.63 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.61 7.38 -2.39 -0.02 1.59 16 34 H 0.07 1.34 6.18 -2.39 -0.01 1.33 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.42 7.24 -2.39 -0.02 1.41 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 3.05 7.57 -2.38 -0.02 3.03 16 41 H 0.10 2.75 8.05 -2.38 -0.02 2.73 16 42 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.05 2.60 7.60 -2.39 -0.02 2.58 16 44 H 0.09 4.22 5.74 -2.39 -0.01 4.20 16 Total: -1.00 -64.48 303.70 4.19 -60.29 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.73 Total: 26.46 kcal Atomic # 6 Polarization: -59.15 SS G_CDS: 2.63 Total: -56.52 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.30 Total: -59.02 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.04 Total: -16.91 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.56 Total: 45.69 kcal Total: -64.48 4.19 -60.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.549 kcal (2) G-P(sol) polarization free energy of solvation -64.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds