Wall clock time and date at job start Mon Mar 30 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99781 * 2 1 4 4 H 1.48492 * 109.47295 * 85.15470 * 3 2 1 5 5 H 1.48500 * 109.47065 * 205.15631 * 3 2 1 6 6 H 1.48505 * 109.47181 * 325.15044 * 3 2 1 7 7 C 1.37872 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00053 * 173.47008 * 7 2 1 9 9 C 1.50700 * 120.00101 * 353.46796 * 7 2 1 10 10 H 1.09000 * 110.67501 * 55.90218 * 9 7 2 11 11 C 1.54891 * 110.75660 * 292.66539 * 9 7 2 12 12 C 1.54468 * 104.10272 * 203.89182 * 11 9 7 13 13 C 1.53876 * 106.68290 * 23.34946 * 12 11 9 14 14 H 1.09004 * 110.06878 * 240.84719 * 13 12 11 15 15 N 1.46496 * 110.03504 * 119.44161 * 13 12 11 16 16 C 1.34774 * 120.00371 * 87.83064 * 15 13 12 17 17 O 1.21591 * 119.99762 * 359.97438 * 16 15 13 18 18 N 1.34772 * 120.00082 * 179.97438 * 16 15 13 19 19 C 1.46500 * 119.99943 * 179.97438 * 18 16 15 20 20 H 1.09001 * 110.34720 * 324.16578 * 19 18 16 21 21 C 1.51105 * 110.38853 * 86.45122 * 19 18 16 22 22 C 1.30531 * 111.10080 * 102.37554 * 21 19 18 23 23 C 1.51102 * 111.10789 * 0.02562 * 22 21 19 24 24 C 1.54638 * 104.72373 * 16.43578 * 23 22 21 25 25 C 1.54271 * 106.60109 * 0.15193 * 13 12 11 26 26 H 0.96993 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.48772 * 322.42088 * 11 9 7 28 28 H 1.09006 * 110.48348 * 85.06451 * 11 9 7 29 29 H 1.08992 * 109.86021 * 264.10604 * 12 11 9 30 30 H 1.09006 * 110.15863 * 142.74581 * 12 11 9 31 31 H 0.97004 * 119.99629 * 267.82951 * 15 13 12 32 32 H 0.96996 * 120.00327 * 359.97438 * 18 16 15 33 33 H 1.07999 * 124.44969 * 282.39883 * 21 19 18 34 34 H 1.08003 * 124.44685 * 180.02562 * 22 21 19 35 35 H 1.08997 * 110.38384 * 135.24614 * 23 22 21 36 36 H 1.08991 * 110.38568 * 257.51655 * 23 22 21 37 37 H 1.08994 * 111.03687 * 217.33333 * 24 23 22 38 38 H 1.09003 * 111.03609 * 93.39721 * 24 23 22 39 39 H 1.08993 * 110.48927 * 217.71877 * 25 13 12 40 40 H 1.08995 * 110.59728 * 95.12572 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3942 2.1055 1.3950 5 1 3.5941 1.4128 -0.5952 6 1 1.5015 2.6209 -0.8001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0793 -1.1970 -0.1069 9 6 1.2584 -2.4949 0.1473 10 1 0.4912 -2.5881 -0.6213 11 6 0.6365 -2.6134 1.5610 12 6 0.4749 -4.1347 1.7748 13 6 1.4884 -4.8219 0.8429 14 1 0.9674 -5.4609 0.1298 15 7 2.4352 -5.6162 1.6295 16 6 2.1448 -6.8943 1.9435 17 8 1.0968 -7.3879 1.5742 18 7 3.0161 -7.6251 2.6667 19 6 2.7002 -9.0143 3.0084 20 1 1.6326 -9.1243 3.1993 21 6 3.1344 -9.9416 1.8972 22 6 4.2481 -10.5506 2.2017 23 6 4.7419 -10.1315 3.5668 24 6 3.5188 -9.4666 4.2401 25 6 2.2347 -3.6965 0.0968 26 1 -0.4850 0.8400 -0.0004 27 1 1.3083 -2.1937 2.3097 28 1 -0.3325 -2.1153 1.5944 29 1 -0.5385 -4.4397 1.5141 30 1 0.6871 -4.3929 2.8123 31 1 3.2711 -5.2222 1.9244 32 1 3.8523 -7.2315 2.9610 33 1 2.5945 -10.0817 0.9724 34 1 4.7506 -11.2608 1.5618 35 1 5.0630 -11.0024 4.1382 36 1 5.5599 -9.4176 3.4720 37 1 3.8216 -8.6112 4.8440 38 1 2.9611 -10.1876 4.8378 39 1 2.4291 -3.9868 -0.9356 40 1 3.1671 -3.4520 0.6055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852367438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:51 Heat of formation + Delta-G solvation = -26.539955 kcal Electronic energy + Delta-G solvation = -19733.819615 eV Core-core repulsion = 16740.995217 eV Total energy + Delta-G solvation = -2992.824398 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18754 -38.57898 -36.93136 -33.68608 -33.29514 -31.79542 -29.26439 -28.14127 -27.72193 -26.38613 -23.80188 -21.44803 -20.81550 -19.65953 -19.17953 -18.92279 -18.08921 -16.71122 -16.24775 -15.89560 -15.21374 -14.80331 -14.55943 -14.14486 -13.89673 -13.80200 -12.59705 -12.50405 -12.31771 -12.21439 -11.83586 -11.75411 -11.66248 -11.28670 -11.13094 -10.98802 -10.86551 -10.54596 -10.29262 -9.99687 -9.81485 -9.54023 -9.28946 -9.17798 -9.08862 -8.82658 -8.43962 -8.34218 -6.00713 -4.02499 1.93834 3.06759 3.30457 3.38031 3.40340 3.47616 4.29606 4.41462 4.43876 4.51388 4.83497 5.05201 5.18361 5.31472 5.44795 5.52429 5.55682 5.61736 5.72089 5.74621 5.86959 5.88062 6.29225 6.35366 6.40813 6.53995 6.60596 6.65286 6.70866 6.77638 6.92477 6.99078 7.12611 7.28493 7.38485 7.68362 7.88626 8.02678 8.28087 8.44653 8.88241 9.00105 9.60947 11.09400 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.044472 B = 0.003442 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.462655 B = 8131.771000 C = 8348.118129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.038 0.962 11 C -0.104 4.104 12 C -0.134 4.134 13 C 0.156 3.844 14 H 0.080 0.920 15 N -0.734 5.734 16 C 0.701 3.299 17 O -0.594 6.594 18 N -0.741 5.741 19 C 0.182 3.818 20 H 0.092 0.908 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.103 4.103 24 C -0.133 4.133 25 C -0.121 4.121 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 -17.577 7.851 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.056 0.944 11 C -0.143 4.143 12 C -0.173 4.173 13 C 0.052 3.948 14 H 0.098 0.902 15 N -0.387 5.387 16 C 0.401 3.599 17 O -0.472 6.472 18 N -0.397 5.397 19 C 0.077 3.923 20 H 0.110 0.890 21 C -0.186 4.186 22 C -0.181 4.181 23 C -0.140 4.140 24 C -0.171 4.171 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.769 -17.884 7.500 20.891 hybrid contribution 1.246 1.280 0.226 1.801 sum 9.015 -16.604 7.726 20.412 Atomic orbital electron populations 1.69973 1.05905 1.26468 1.50244 1.24979 0.94789 0.99018 0.95064 0.86650 0.79979 0.83859 0.77914 1.20797 1.19939 1.21323 1.21099 0.93289 0.90631 1.50227 0.92659 1.19562 0.93082 0.90974 0.93180 0.94377 1.22389 1.01130 0.90920 0.99813 1.22667 0.98194 0.98381 0.98021 1.21721 0.89533 0.91464 0.92067 0.90211 1.45545 1.23705 1.10994 1.58496 1.16065 0.83557 0.81331 0.78949 1.90894 1.25391 1.71858 1.59079 1.45178 1.22585 1.12548 1.59364 1.20482 1.00602 0.79512 0.91729 0.88978 1.23695 0.97752 0.97007 1.00102 1.23316 0.96927 1.00190 0.97657 1.21412 0.98047 1.00374 0.94142 1.22737 0.96638 1.01089 0.96593 1.22755 0.99532 0.95513 0.98078 0.93058 0.93516 0.91922 0.92597 0.93226 0.77424 0.77337 0.85769 0.85848 0.90920 0.90671 0.90119 0.89641 0.92836 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 12.78 55.43 0.71 -24.79 16 2 C 0.06 1.74 5.32 -17.82 -0.09 1.65 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.51 -13.83 8.48 -34.44 -0.29 -14.12 16 8 H 0.06 1.46 7.77 -52.49 -0.41 1.05 16 9 C 0.05 1.24 2.66 -89.77 -0.24 1.00 16 10 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 11 C -0.10 -2.39 5.89 -24.96 -0.15 -2.54 16 12 C -0.13 -2.65 6.60 -25.51 -0.17 -2.82 16 13 C 0.16 2.91 3.25 -66.81 -0.22 2.69 16 14 H 0.08 1.59 7.56 -51.93 -0.39 1.20 16 15 N -0.73 -11.37 4.99 -57.58 -0.29 -11.66 16 16 C 0.70 11.23 8.55 -86.92 -0.74 10.49 16 17 O -0.59 -11.94 15.70 5.29 0.08 -11.85 16 18 N -0.74 -8.70 5.12 -58.76 -0.30 -9.00 16 19 C 0.18 1.97 3.20 -68.01 -0.22 1.75 16 20 H 0.09 1.17 7.65 -51.93 -0.40 0.77 16 21 C -0.17 -1.77 10.39 -35.70 -0.37 -2.14 16 22 C -0.16 -1.37 10.77 -35.70 -0.38 -1.76 16 23 C -0.10 -0.71 6.81 -26.83 -0.18 -0.89 16 24 C -0.13 -0.99 6.79 -25.00 -0.17 -1.16 16 25 C -0.12 -2.40 5.95 -25.07 -0.15 -2.55 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 28 H 0.06 1.57 7.87 -51.93 -0.41 1.16 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.39 5.06 8.38 -40.82 -0.34 4.72 16 32 H 0.39 3.55 8.59 -40.82 -0.35 3.20 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 LS Contribution 326.81 15.07 4.92 4.92 Total: -1.00 -31.12 326.81 -9.73 -40.84 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.46 Total: 5.90 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.38 Total: -10.40 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.12 Total: -45.45 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.12 -9.73 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852367438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.304 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds