Wall clock time and date at job start Mon Mar 30 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00158 * 2 1 4 4 C 1.52997 * 109.46561 * 125.00167 * 3 2 1 5 5 C 1.53006 * 109.46408 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46712 * 180.02562 * 5 4 3 7 7 C 1.36224 * 116.99866 * 180.02562 * 6 5 4 8 8 C 1.40121 * 126.05299 * 89.97405 * 7 6 5 9 9 C 1.50700 * 125.81946 * 0.03691 * 8 7 6 10 10 N 1.30869 * 108.35781 * 180.02562 * 8 7 6 11 11 N 1.40083 * 108.32531 * 359.97438 * 10 8 7 12 12 C 1.46491 * 126.08156 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.46957 * 90.02662 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.35591 * 126.05186 * 270.28176 * 7 6 5 22 22 C 1.50697 * 126.21235 * 0.03994 * 21 7 6 23 23 H 1.08002 * 120.00065 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.99862 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99764 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.46889 * 5.00268 * 3 2 1 27 27 H 1.08993 * 109.47223 * 245.00450 * 3 2 1 28 28 H 1.09001 * 109.47436 * 60.00436 * 4 3 2 29 29 H 1.08998 * 109.47633 * 299.99585 * 4 3 2 30 30 H 1.08996 * 109.47475 * 60.00309 * 5 4 3 31 31 H 1.08995 * 109.47437 * 299.99688 * 5 4 3 32 32 H 1.08997 * 109.47004 * 269.98215 * 9 8 7 33 33 H 1.08994 * 109.47005 * 29.98402 * 9 8 7 34 34 H 1.08997 * 109.46926 * 149.98293 * 9 8 7 35 35 H 1.09004 * 109.47166 * 330.02928 * 12 11 10 36 36 H 1.08994 * 109.47507 * 210.02634 * 12 11 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47147 * 270.14673 * 22 21 7 39 39 H 1.09007 * 109.46816 * 30.14648 * 22 21 7 40 40 H 1.09002 * 109.47380 * 150.13765 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6582 1.1820 6 8 4.7075 2.6840 2.2853 7 6 5.4708 3.8028 2.4321 8 6 5.1289 4.9432 3.1710 9 6 3.8502 5.1433 3.9430 10 7 6.1095 5.8047 3.0767 11 7 7.1123 5.2446 2.2747 12 6 8.3834 5.8776 1.9149 13 6 9.4270 5.5299 2.9450 14 1 9.1693 4.8999 3.7836 15 6 10.7125 6.0109 2.8136 16 7 11.6246 5.7029 3.7096 17 14 11.1585 7.0999 1.3629 18 1 10.9285 8.5222 1.7226 19 1 12.5890 6.9019 1.0167 20 1 10.3126 6.7413 0.1962 21 6 6.6933 4.0123 1.8842 22 6 7.4509 3.0519 1.0042 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9313 28 1 3.7400 0.5064 1.0920 29 1 2.4774 1.2354 2.1130 30 1 3.0946 3.4845 1.2718 31 1 4.3574 2.7562 0.2507 32 1 3.1025 5.6005 3.2951 33 1 3.4844 4.1792 4.2961 34 1 4.0391 5.7949 4.7961 35 1 8.2535 6.9594 1.8801 36 1 8.7042 5.5186 0.9371 37 1 12.5289 6.0416 3.6173 38 1 8.0746 2.4067 1.6230 39 1 6.7452 2.4423 0.4397 40 1 8.0809 3.6120 0.3131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902909845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:53 Heat of formation + Delta-G solvation = 35.670652 kcal Electronic energy + Delta-G solvation = -19529.384964 eV Core-core repulsion = 16539.258221 eV Total energy + Delta-G solvation = -2990.126744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70762 -37.74678 -35.85862 -33.97050 -32.52761 -31.84640 -30.62649 -29.32889 -26.76157 -26.13942 -25.34994 -22.29920 -21.69620 -20.16086 -19.67636 -19.04830 -17.16793 -16.87575 -15.94749 -15.54282 -15.05200 -14.77224 -14.37285 -13.95119 -13.67441 -13.24897 -13.13095 -12.90046 -12.74167 -12.46804 -12.33406 -12.06629 -12.00823 -11.92812 -11.60376 -11.51156 -11.06939 -11.05744 -10.94344 -10.76340 -10.31955 -10.23142 -9.70764 -9.59951 -9.22444 -8.81334 -8.33654 -7.56043 -6.29240 -4.32922 2.01536 2.47725 2.95423 3.12540 3.17802 3.19211 3.32712 4.16347 4.18232 4.68128 4.78737 4.98174 5.01186 5.13354 5.21547 5.27994 5.38142 5.40397 5.49607 5.60765 5.65080 5.70469 5.79185 5.88775 5.92731 6.00774 6.10316 6.12752 6.18211 6.28864 6.36840 6.40561 6.51507 6.54724 6.72797 6.98512 7.24029 7.65969 8.07887 8.26547 8.43418 8.75892 9.25242 10.83258 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.003783 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.485910 B = 7399.405278 C = 7827.286617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.093 4.093 4 C -0.112 4.112 5 C 0.057 3.943 6 O -0.298 6.298 7 C -0.083 4.083 8 C 0.041 3.959 9 C -0.063 4.063 10 N -0.281 5.281 11 N -0.321 5.321 12 C 0.233 3.767 13 C -0.543 4.543 14 H 0.081 0.919 15 C 0.080 3.920 16 N -0.885 5.885 17 Si 0.874 3.126 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.081 3.919 22 C -0.082 4.082 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 -7.813 -8.657 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.167 4.167 3 C -0.130 4.130 4 C -0.149 4.149 5 C -0.019 4.019 6 O -0.213 6.213 7 C -0.138 4.138 8 C -0.125 4.125 9 C -0.122 4.122 10 N -0.105 5.105 11 N -0.103 5.103 12 C 0.114 3.886 13 C -0.581 4.581 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.522 5.522 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.050 4.050 22 C -0.140 4.140 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.611 -6.723 -8.184 19.700 hybrid contribution 0.214 -0.029 -1.007 1.030 sum -16.397 -6.753 -9.191 19.973 Atomic orbital electron populations 1.23853 0.95980 1.01787 1.01923 1.22955 0.95996 0.98511 0.99192 1.20683 0.98088 0.95544 0.98674 1.21427 0.97665 0.97155 0.98676 1.22726 0.91927 0.97280 0.89935 1.86167 1.52584 1.35045 1.47471 1.17778 0.93249 0.91921 1.10863 1.22447 0.96992 0.92411 1.00628 1.20022 0.91125 1.02491 0.98550 1.77327 0.97622 1.21963 1.13624 1.48813 1.15045 1.10924 1.35502 1.20029 0.77098 0.94323 0.97172 1.21161 0.93105 1.33891 1.09947 0.90051 1.24808 0.95807 0.95624 0.96241 1.69870 1.03457 1.44244 1.34585 0.86891 0.78547 0.81670 0.82896 1.19550 1.20466 1.18936 1.21196 0.95656 0.88939 0.99245 1.20316 0.99223 0.96708 0.97750 0.88605 0.88625 0.87300 0.91352 0.90790 0.90960 0.91012 0.93630 0.93706 0.91559 0.90772 0.91196 0.93421 0.93314 0.92052 0.89806 0.90891 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.04 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.52 16 3 C -0.09 -0.77 5.66 -27.88 -0.16 -0.93 16 4 C -0.11 -1.13 5.57 -26.73 -0.15 -1.28 16 5 C 0.06 0.73 6.07 37.16 0.23 0.96 16 6 O -0.30 -5.03 10.17 -20.46 -0.21 -5.24 16 7 C -0.08 -1.61 6.15 -39.82 -0.24 -1.85 16 8 C 0.04 0.81 7.22 -82.30 -0.59 0.21 16 9 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 10 N -0.28 -6.45 12.57 33.73 0.42 -6.02 16 11 N -0.32 -7.45 3.62 -58.03 -0.21 -7.66 16 12 C 0.23 5.59 5.09 -5.20 -0.03 5.56 16 13 C -0.54 -15.25 9.94 -34.44 -0.34 -15.59 16 14 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 17 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 21 C 0.08 1.65 6.97 -81.74 -0.57 1.08 16 22 C -0.08 -1.37 10.10 36.00 0.36 -1.00 16 23 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 24 H 0.10 0.66 7.84 -52.49 -0.41 0.24 16 25 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 26 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.14 7.58 -51.93 -0.39 0.74 16 36 H 0.05 1.09 6.13 -51.93 -0.32 0.77 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -31.58 341.40 -6.45 -38.03 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.56 Total: -0.30 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.14 Total: -13.84 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.99 Total: -39.20 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.21 Total: -5.24 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.58 -6.45 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902909845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.704 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds