Wall clock time and date at job start Mon Mar 30 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53004 * 109.46663 * 240.00401 * 2 1 3 5 5 C 1.50697 * 109.47387 * 59.99813 * 4 2 1 6 6 H 1.08000 * 120.00144 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99821 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00508 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99834 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46845 * 60.00484 * 9 7 5 11 11 H 1.48498 * 109.47028 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47227 * 300.00326 * 9 7 5 13 13 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 14 14 N 1.46905 * 109.47039 * 299.99787 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.38654 * 269.71670 * 16 15 14 18 18 N 1.31849 * 120.88314 * 179.74924 * 17 16 15 19 19 C 1.31833 * 121.77948 * 0.54629 * 18 17 16 20 20 C 1.38706 * 120.68839 * 359.72288 * 19 18 17 21 21 O 1.35907 * 120.47246 * 179.97438 * 20 19 18 22 22 C 1.38530 * 120.39100 * 89.99881 * 16 15 14 23 23 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 24 24 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 25 25 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 28 28 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 29 29 H 1.09001 * 109.46514 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.46924 * 299.99657 * 4 2 1 31 31 H 0.96997 * 120.00792 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47393 * 180.02562 * 13 2 1 33 33 H 1.08998 * 109.47408 * 59.99713 * 13 2 1 34 34 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 35 35 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 36 36 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 37 37 H 1.07997 * 119.55504 * 0.03090 * 17 16 15 38 38 H 1.08001 * 119.65520 * 179.75130 * 19 18 17 39 39 H 0.96700 * 114.00028 * 270.01248 * 21 20 19 40 40 H 1.07993 * 120.81680 * 359.95460 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6270 -1.5507 -3.8528 9 14 1.2476 0.3987 -5.2572 10 1 1.7417 1.7991 -5.2571 11 1 1.7427 -0.3012 -6.4697 12 1 -0.2373 0.3977 -5.2572 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0288 2.4486 15 6 2.0219 -0.6946 3.6702 16 6 1.5003 0.0419 4.8771 17 6 2.2343 1.0692 5.4407 18 7 1.7851 1.7234 6.4936 19 6 0.6318 1.4233 7.0574 20 6 -0.1585 0.4014 6.5522 21 8 -1.3464 0.0954 7.1373 22 6 0.2826 -0.3062 5.4383 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7216 -1.2491 30 1 1.6766 -1.7488 -1.2493 31 1 2.8613 -1.8822 -4.7338 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.5438 0.0412 2.4402 35 1 1.6587 -1.7223 3.6872 36 1 3.1117 -0.6941 3.6868 37 1 3.1863 1.3423 5.0099 38 1 0.2987 1.9792 7.9214 39 1 -1.2811 -0.5707 7.8352 40 1 -0.3101 -1.1068 5.0213 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922976477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:27 Heat of formation + Delta-G solvation = -25.260066 kcal Electronic energy + Delta-G solvation = -19488.155364 eV Core-core repulsion = 16495.386467 eV Total energy + Delta-G solvation = -2992.768898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66854 -37.91181 -37.40451 -34.98159 -32.63110 -31.65105 -30.40102 -27.19934 -26.41399 -26.30589 -24.50622 -23.71850 -22.41072 -21.76476 -18.58297 -17.82562 -17.18842 -17.11096 -16.24702 -15.71772 -15.10573 -14.85669 -14.45857 -14.14563 -13.50976 -13.44318 -13.26874 -13.11718 -12.65018 -12.55747 -12.21491 -11.98419 -11.71999 -11.43206 -10.97980 -10.88212 -10.79409 -10.49874 -10.29809 -10.16223 -9.96202 -9.70308 -9.61938 -9.12479 -8.97789 -8.84234 -8.31924 -8.18872 -5.96632 -3.96879 0.76730 0.95840 3.34840 3.39391 3.40169 3.41941 3.73124 4.29496 4.43461 4.51290 4.59449 4.69363 4.79141 4.96093 5.30745 5.39174 5.48993 5.57303 5.67573 5.73792 5.80285 5.95624 6.00877 6.20156 6.29798 6.31128 6.48023 6.65028 6.76425 6.82140 7.14591 7.19068 7.19238 7.25139 7.33504 7.56506 7.69114 7.72460 7.83963 8.03407 8.47747 9.08251 9.66032 11.15015 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.041024 B = 0.003310 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.369016 B = 8458.237694 C = 8559.182729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.035 3.965 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.097 3.903 16 C -0.108 4.108 17 C 0.111 3.889 18 N -0.468 5.468 19 C 0.072 3.928 20 C 0.053 3.947 21 O -0.493 6.493 22 C -0.099 4.099 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.340 0.660 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.391 0.609 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 0.883 21.047 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.059 4.059 14 N -0.313 5.313 15 C -0.032 4.032 16 C -0.110 4.110 17 C -0.047 4.047 18 N -0.177 5.177 19 C -0.086 4.086 20 C 0.006 3.994 21 O -0.301 6.301 22 C -0.126 4.126 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.159 0.841 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.246 0.754 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.669 2.306 20.864 21.160 hybrid contribution -1.289 -1.520 -0.987 2.224 sum -3.958 0.786 19.877 20.282 Atomic orbital electron populations 1.21778 0.96099 1.00354 1.00465 1.20640 0.94726 0.96204 0.94330 1.21601 0.99810 0.95733 1.00218 1.19115 0.96120 0.94939 0.90113 1.21201 1.30884 1.11931 0.90624 0.92338 1.25008 0.95376 0.95109 0.99047 1.69947 1.37237 1.23191 1.23423 0.86724 0.79154 0.79853 0.82666 1.20278 1.21439 1.20359 1.22156 0.99957 0.94717 0.89052 1.60637 1.16613 1.53504 1.00591 1.20850 1.00850 0.94295 0.87218 1.20878 0.94700 0.97805 0.97644 1.22768 0.99892 0.90823 0.91194 1.67741 1.13464 1.26708 1.09820 1.23122 0.89911 0.95881 0.99687 1.19504 0.87108 0.97448 0.95291 1.84861 1.26680 1.63326 1.55265 1.21885 0.95315 0.99578 0.95823 0.94881 0.91638 0.94095 0.94097 0.92675 0.93905 0.96643 0.96937 0.93092 0.91280 0.95678 0.84095 0.94321 0.89611 0.82111 0.82504 0.75355 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.84 7.65 -34.44 -0.26 -14.10 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.07 1.14 4.65 -3.82 -0.02 1.13 16 14 N -0.68 -9.40 5.70 -115.06 -0.66 -10.05 16 15 C 0.10 1.09 5.84 -4.98 -0.03 1.06 16 16 C -0.11 -1.16 5.41 -104.51 -0.57 -1.72 16 17 C 0.11 1.24 10.86 -17.53 -0.19 1.05 16 18 N -0.47 -5.55 10.35 -13.13 -0.14 -5.68 16 19 C 0.07 0.73 11.14 -17.38 -0.19 0.54 16 20 C 0.05 0.52 6.74 -39.07 -0.26 0.25 16 21 O -0.49 -4.05 13.53 -19.45 -0.26 -4.31 16 22 C -0.10 -1.00 9.81 -39.14 -0.38 -1.38 16 23 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 24 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 28 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.34 4.68 6.76 -39.29 -0.27 4.42 16 35 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.39 1.21 9.06 45.56 0.41 1.62 16 40 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -31.34 328.30 -7.36 -38.70 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.35 Total: 2.12 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.62 Total: -16.25 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.06 Total: -41.75 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.26 Total: -4.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.34 -7.36 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922976477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.440 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds