Wall clock time and date at job start Mon Mar 30 2020 06:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38149 * 120.04458 * 2 1 4 4 C 1.38362 * 120.07841 * 180.02562 * 3 2 1 5 5 Cl 1.73605 * 119.93945 * 179.97438 * 4 3 2 6 6 C 1.38420 * 120.12061 * 359.96194 * 4 3 2 7 7 C 1.38042 * 120.01794 * 0.03818 * 6 4 3 8 8 C 1.38817 * 120.05042 * 179.97438 * 2 1 3 9 9 N 1.39877 * 120.17407 * 0.02562 * 8 2 1 10 10 C 1.34561 * 120.44736 * 198.71871 * 9 8 2 11 11 O 1.21284 * 119.61238 * 180.57632 * 10 9 8 12 12 C 1.50503 * 120.77301 * 0.33634 * 10 9 8 13 13 H 1.08999 * 109.47656 * 204.97555 * 12 10 9 14 14 C 1.50701 * 109.12459 * 85.27559 * 12 10 9 15 15 H 1.07997 * 119.99975 * 239.57323 * 14 12 10 16 16 C 1.37872 * 119.99829 * 59.56959 * 14 12 10 17 17 N 1.31510 * 120.00659 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99806 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47286 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47102 * 120.00475 * 18 16 14 21 21 H 1.48502 * 109.47549 * 240.00438 * 18 16 14 22 22 C 1.50665 * 120.17430 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.47152 * 270.01542 * 1 2 3 24 24 H 1.09000 * 109.47587 * 30.01992 * 1 2 3 25 25 H 1.09004 * 109.47151 * 150.01638 * 1 2 3 26 26 H 1.07999 * 119.96089 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.99282 * 180.02562 * 6 4 3 28 28 H 0.97001 * 119.77355 * 18.43484 * 9 8 2 29 29 H 0.96998 * 120.00866 * 179.97438 * 17 16 14 30 30 H 1.08999 * 109.45910 * 266.10629 * 22 7 6 31 31 H 1.08995 * 109.46144 * 26.06962 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1986 1.1959 0.0000 4 6 3.5822 1.1967 -0.0005 5 17 4.4478 2.7016 -0.0012 6 6 4.2775 -0.0002 -0.0003 7 6 3.5909 -1.1977 -0.0003 8 6 2.2021 -1.2016 0.0005 9 7 1.5074 -2.4157 0.0005 10 6 2.1223 -3.5531 0.3733 11 8 1.5085 -4.5990 0.3576 12 6 3.5642 -3.5433 0.8044 13 1 3.9996 -4.5289 0.6395 14 6 3.6390 -3.2020 2.2704 15 1 4.1879 -2.3303 2.5946 16 6 3.0066 -4.0027 3.1976 17 7 2.3385 -5.0645 2.8030 18 14 3.0998 -3.5802 5.0148 19 1 3.9059 -2.3462 5.1954 20 1 1.7296 -3.3574 5.5422 21 1 3.7376 -4.7007 5.7516 22 6 4.3442 -2.5026 -0.0006 23 1 -0.3633 0.0003 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5136 26 1 1.6587 2.1312 -0.0004 27 1 5.3576 0.0028 -0.0003 28 1 0.5750 -2.4372 -0.2661 29 1 1.8938 -5.6281 3.4553 30 1 4.4651 -2.8518 -1.0260 31 1 5.3253 -2.3556 0.4509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:57 Heat of formation + Delta-G solvation = -49.296159 kcal Electronic energy + Delta-G solvation = -17949.021536 eV Core-core repulsion = 15026.534668 eV Total energy + Delta-G solvation = -2922.486867 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.80462 -39.50984 -37.46400 -36.13593 -35.54124 -34.40026 -32.06595 -30.29550 -27.86591 -27.15271 -24.62074 -23.63094 -22.28017 -20.13479 -18.88003 -18.70125 -17.53171 -16.66332 -16.38554 -16.15486 -15.58437 -15.41607 -14.82837 -14.53863 -14.47804 -14.04203 -13.76807 -13.60639 -13.37474 -13.00636 -12.83592 -12.64754 -12.49139 -12.35799 -12.25351 -11.89143 -11.55073 -11.32099 -11.05616 -10.75661 -10.35117 -9.56976 -8.69555 -8.15539 -6.36787 0.23898 0.35859 1.27150 1.35561 1.38140 1.49946 2.04588 2.36672 2.39377 2.83298 3.12137 3.75355 3.80314 4.16267 4.23484 4.32216 4.36593 4.47110 4.66452 4.72518 4.79944 4.89661 5.15952 5.22709 5.23671 5.30439 5.37411 5.43376 5.63913 5.83607 6.03116 6.15595 6.42123 6.76761 7.31983 7.56232 8.84851 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.007335 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.831166 B = 3816.632699 C = 4280.650557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.064 4.064 5 Cl -0.069 7.069 6 C -0.085 4.085 7 C -0.099 4.099 8 C 0.166 3.834 9 N -0.668 5.668 10 C 0.526 3.474 11 O -0.555 6.555 12 C 0.027 3.973 13 H 0.034 0.966 14 C -0.527 4.527 15 H 0.072 0.928 16 C 0.009 3.991 17 N -0.888 5.888 18 Si 0.954 3.046 19 H -0.257 1.257 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.063 4.063 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.159 0.841 27 H 0.149 0.851 28 H 0.400 0.600 29 H 0.259 0.741 30 H 0.076 0.924 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 15.125 -6.480 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.091 4.091 5 Cl -0.040 7.040 6 C -0.105 4.105 7 C -0.102 4.102 8 C 0.069 3.931 9 N -0.313 5.313 10 C 0.317 3.683 11 O -0.430 6.430 12 C 0.005 3.995 13 H 0.052 0.948 14 C -0.565 4.565 15 H 0.090 0.910 16 C -0.194 4.194 17 N -0.524 5.524 18 Si 0.779 3.221 19 H -0.181 1.181 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.100 4.100 23 H 0.089 0.911 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.177 0.823 27 H 0.167 0.833 28 H 0.239 0.761 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.458 14.399 -6.371 15.752 hybrid contribution -0.493 -0.390 1.053 1.227 sum -0.035 14.009 -5.318 14.984 Atomic orbital electron populations 1.20726 0.88820 1.03886 1.02976 1.19687 0.97513 0.90322 1.04924 1.20864 0.91667 0.98204 0.99579 1.20748 0.92619 0.86837 1.08917 1.98337 1.76903 1.31597 1.97211 1.20790 1.00904 0.89128 0.99630 1.19534 0.91723 0.95876 1.03060 1.17832 0.91449 0.85532 0.98325 1.43775 1.14838 1.06582 1.66132 1.21886 0.92362 0.81590 0.72492 1.90590 1.68373 1.32354 1.51711 1.18883 0.87539 0.96635 0.96426 0.94802 1.21135 1.34244 1.11560 0.89536 0.90976 1.25992 0.94825 0.94889 1.03661 1.70357 1.32105 1.15009 1.34963 0.85558 0.77685 0.78802 0.80087 1.18087 1.21367 1.20355 1.20499 0.99083 0.90850 0.99609 0.91054 0.88198 0.91983 0.82320 0.83342 0.76145 0.93214 0.90525 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.71 71.23 0.69 -1.67 16 2 C -0.12 -3.41 5.90 -19.75 -0.12 -3.53 16 3 C -0.08 -2.07 9.48 22.28 0.21 -1.86 16 4 C -0.06 -1.67 6.32 22.34 0.14 -1.53 16 5 Cl -0.07 -1.56 28.95 -2.72 -0.08 -1.63 16 6 C -0.09 -2.48 9.47 22.27 0.21 -2.27 16 7 C -0.10 -3.44 5.30 -19.77 -0.10 -3.54 16 8 C 0.17 5.87 6.47 38.15 0.25 6.12 16 9 N -0.67 -27.08 5.23 -304.05 -1.59 -28.67 16 10 C 0.53 26.55 6.31 87.63 0.55 27.10 16 11 O -0.55 -32.55 16.28 -3.04 -0.05 -32.60 16 12 C 0.03 1.31 2.47 -12.36 -0.03 1.28 16 13 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.53 -27.91 8.13 25.60 0.21 -27.70 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.01 0.50 5.29 84.65 0.45 0.95 16 17 N -0.89 -53.84 11.21 21.44 0.24 -53.60 16 18 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.06 -2.38 5.39 29.82 0.16 -2.22 16 23 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.10 1.56 8.09 -2.39 -0.02 1.54 16 25 H 0.06 1.37 6.40 -2.38 -0.02 1.35 16 26 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 27 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.40 14.43 6.86 -92.71 -0.64 13.80 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.09 3.20 8.01 -2.39 -0.02 3.18 16 Total: -1.00 -67.62 278.69 3.70 -63.92 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.53 Total: 15.79 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 2.62 Total: -8.88 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.35 Total: -82.27 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.60 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.63 kcal Total: -67.62 3.70 -63.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.623 kcal (2) G-P(sol) polarization free energy of solvation -67.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds