Wall clock time and date at job start Mon Mar 30 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38135 * 120.04770 * 2 1 4 4 C 1.38357 * 120.08045 * 179.97438 * 3 2 1 5 5 Cl 1.73607 * 119.94067 * 180.02562 * 4 3 2 6 6 C 1.38420 * 120.12127 * 359.97438 * 4 3 2 7 7 C 1.38048 * 120.01564 * 0.02562 * 6 4 3 8 8 C 1.38821 * 120.04325 * 179.97438 * 2 1 3 9 9 N 1.39875 * 120.18420 * 359.97438 * 8 2 1 10 10 C 1.34563 * 120.44415 * 198.54995 * 9 8 2 11 11 O 1.21287 * 119.61134 * 180.79215 * 10 9 8 12 12 C 1.50456 * 120.77289 * 0.75698 * 10 9 8 13 13 H 1.09003 * 109.36563 * 84.98107 * 12 10 9 14 14 C 1.50697 * 109.39866 * 204.69500 * 12 10 9 15 15 H 1.07998 * 120.00216 * 120.47780 * 14 12 10 16 16 C 1.37877 * 120.00208 * 300.48713 * 14 12 10 17 17 N 1.31517 * 119.99877 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00165 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46899 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46792 * 119.99686 * 18 16 14 21 21 H 1.48502 * 109.46947 * 239.99544 * 18 16 14 22 22 C 1.50658 * 120.17861 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.47307 * 270.02271 * 1 2 3 24 24 H 1.08998 * 109.47174 * 30.02760 * 1 2 3 25 25 H 1.09008 * 109.47304 * 150.02078 * 1 2 3 26 26 H 1.08008 * 119.96079 * 359.95732 * 3 2 1 27 27 H 1.07997 * 119.99709 * 179.97438 * 6 4 3 28 28 H 0.96996 * 119.77552 * 18.53569 * 9 8 2 29 29 H 0.97000 * 120.00172 * 180.02562 * 17 16 14 30 30 H 1.09002 * 109.46400 * 266.04574 * 22 7 6 31 31 H 1.08994 * 109.46236 * 26.02350 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1957 0.0000 4 6 3.5823 1.1965 0.0005 5 17 4.4479 2.7014 0.0012 6 6 4.2776 -0.0004 0.0016 7 6 3.5909 -1.1980 0.0016 8 6 2.2020 -1.2017 0.0005 9 7 1.5075 -2.4158 0.0016 10 6 2.1237 -3.5535 0.3712 11 8 1.5111 -4.6002 0.3527 12 6 3.5639 -3.5426 0.8063 13 1 3.6193 -3.2954 1.8665 14 6 4.1656 -4.9055 0.5798 15 1 5.0185 -5.0175 -0.0731 16 6 3.6272 -6.0096 1.2060 17 7 2.5887 -5.8732 2.0014 18 14 4.3735 -7.6990 0.9258 19 1 5.5252 -7.5832 -0.0045 20 1 4.8373 -8.2563 2.2217 21 1 3.3507 -8.6004 0.3369 22 6 4.3440 -2.5028 0.0022 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6588 2.1312 -0.0007 27 1 5.3576 0.0026 0.0016 28 1 0.5753 -2.4377 -0.2656 29 1 2.2101 -6.6498 2.4422 30 1 4.4645 -2.8530 -1.0230 31 1 5.3252 -2.3556 0.4534 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:58 Heat of formation + Delta-G solvation = -38.439580 kcal Electronic energy + Delta-G solvation = -17678.107493 eV Core-core repulsion = 14756.091402 eV Total energy + Delta-G solvation = -2922.016091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.79794 -39.53083 -37.48483 -35.96295 -35.63429 -34.35477 -32.04314 -30.34610 -27.88899 -27.06947 -24.61777 -23.54525 -22.28999 -20.01646 -18.96603 -18.33352 -17.67964 -16.78510 -16.46387 -16.33543 -15.47885 -15.33433 -14.84485 -14.52546 -14.50246 -13.99905 -13.68753 -13.63428 -13.25095 -13.16260 -12.79459 -12.73223 -12.38671 -12.34961 -12.15817 -11.77283 -11.57615 -11.21687 -11.05551 -10.55853 -10.27110 -9.62905 -8.73718 -8.10591 -6.22534 0.17628 0.29359 1.24335 1.40316 1.43116 1.53845 2.05961 2.35557 2.46241 2.74914 3.26858 3.72800 3.75790 4.18114 4.20285 4.28471 4.36294 4.49565 4.60290 4.69008 4.79884 4.88029 5.15513 5.19379 5.23243 5.29305 5.36051 5.46975 5.72053 5.78025 6.05350 6.16532 6.46802 6.83959 7.45948 7.65906 8.97635 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031446 B = 0.005581 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.194878 B = 5015.649226 C = 5762.134201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.080 4.080 4 C -0.063 4.063 5 Cl -0.067 7.067 6 C -0.081 4.081 7 C -0.119 4.119 8 C 0.159 3.841 9 N -0.676 5.676 10 C 0.503 3.497 11 O -0.516 6.516 12 C 0.034 3.966 13 H 0.033 0.967 14 C -0.553 4.553 15 H 0.068 0.932 16 C 0.028 3.972 17 N -0.879 5.879 18 Si 0.957 3.043 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.291 1.291 22 C -0.058 4.058 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.162 0.838 27 H 0.150 0.850 28 H 0.399 0.601 29 H 0.254 0.746 30 H 0.071 0.929 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 16.813 -4.415 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.091 4.091 5 Cl -0.038 7.038 6 C -0.101 4.101 7 C -0.122 4.122 8 C 0.061 3.939 9 N -0.323 5.323 10 C 0.293 3.707 11 O -0.387 6.387 12 C 0.013 3.987 13 H 0.050 0.950 14 C -0.590 4.590 15 H 0.086 0.914 16 C -0.176 4.176 17 N -0.514 5.514 18 Si 0.782 3.218 19 H -0.182 1.182 20 H -0.202 1.202 21 H -0.218 1.218 22 C -0.095 4.095 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.179 0.821 27 H 0.168 0.832 28 H 0.238 0.762 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.477 16.126 -4.230 16.678 hybrid contribution -0.225 -1.149 0.035 1.172 sum -0.702 14.977 -4.195 15.569 Atomic orbital electron populations 1.20745 0.88595 1.03869 1.03283 1.19701 0.97602 0.90112 1.04684 1.20913 0.91610 0.98327 0.99055 1.20766 0.92678 0.86875 1.08780 1.98345 1.76875 1.31444 1.97180 1.20808 1.00992 0.89017 0.99236 1.19757 0.91941 0.96103 1.04411 1.17936 0.91369 0.85832 0.98724 1.44205 1.14879 1.06482 1.66736 1.22386 0.91610 0.81743 0.74996 1.90654 1.67140 1.31453 1.49483 1.18691 0.87759 0.96193 0.96056 0.94957 1.21108 1.16024 0.91552 1.30358 0.91387 1.25753 0.94467 1.02974 0.94389 1.70183 1.22005 1.30624 1.28615 0.85533 0.78323 0.79670 0.78230 1.18231 1.20156 1.21797 1.20395 0.98787 0.89680 1.00626 0.90457 0.88297 0.92103 0.82069 0.83246 0.76176 0.93662 0.91109 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.72 71.24 0.69 -1.42 16 2 C -0.12 -3.02 5.90 -19.75 -0.12 -3.13 16 3 C -0.08 -1.78 9.48 22.27 0.21 -1.57 16 4 C -0.06 -1.52 6.32 22.34 0.14 -1.38 16 5 Cl -0.07 -1.39 28.95 -2.72 -0.08 -1.47 16 6 C -0.08 -2.22 9.47 22.27 0.21 -2.00 16 7 C -0.12 -3.98 5.66 -19.77 -0.11 -4.09 16 8 C 0.16 5.31 6.48 38.15 0.25 5.56 16 9 N -0.68 -26.44 5.23 -304.09 -1.59 -28.03 16 10 C 0.50 25.44 7.29 87.61 0.64 26.08 16 11 O -0.52 -30.65 14.05 -3.05 -0.04 -30.69 16 12 C 0.03 1.71 2.39 -12.41 -0.03 1.68 16 13 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.55 -30.63 8.39 25.60 0.21 -30.41 16 15 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 16 C 0.03 1.62 4.77 84.65 0.40 2.02 16 17 N -0.88 -53.94 10.76 21.45 0.23 -53.71 16 18 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 C -0.06 -2.23 5.25 29.78 0.16 -2.07 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 25 H 0.06 1.23 6.40 -2.38 -0.02 1.22 16 26 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.40 13.85 6.86 -92.71 -0.64 13.21 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.07 2.74 8.09 -2.39 -0.02 2.72 16 31 H 0.09 3.18 8.06 -2.39 -0.02 3.17 16 Total: -1.00 -68.35 276.89 3.74 -64.62 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.53 Total: 12.85 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 2.66 Total: -10.74 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -1.36 Total: -81.74 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.69 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -68.35 3.74 -64.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.175 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds