Wall clock time and date at job start Mon Mar 30 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 120.05919 * 2 1 4 4 Cl 1.73601 * 119.97018 * 359.97438 * 3 2 1 5 5 C 1.38378 * 120.06484 * 180.02562 * 3 2 1 6 6 C 1.38306 * 120.13131 * 359.70198 * 5 3 2 7 7 C 1.38056 * 120.04322 * 0.57569 * 6 5 3 8 8 C 1.38794 * 120.05514 * 179.97438 * 2 1 3 9 9 N 1.39820 * 120.18707 * 359.97438 * 8 2 1 10 10 C 1.34568 * 120.45557 * 198.48698 * 9 8 2 11 11 O 1.21290 * 119.60953 * 180.79787 * 10 9 8 12 12 C 1.50491 * 120.77449 * 0.81880 * 10 9 8 13 13 H 1.08995 * 109.39743 * 204.67384 * 12 10 9 14 14 C 1.50698 * 109.32259 * 84.89254 * 12 10 9 15 15 H 1.07998 * 120.00114 * 239.59100 * 14 12 10 16 16 C 1.37879 * 119.99726 * 59.60144 * 14 12 10 17 17 N 1.31503 * 120.00100 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99604 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47159 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46762 * 119.99759 * 18 16 14 21 21 H 1.48499 * 109.46979 * 239.99400 * 18 16 14 22 22 C 1.50666 * 120.17565 * 179.69869 * 7 6 5 23 23 H 1.09005 * 109.47019 * 270.02473 * 1 2 3 24 24 H 1.08997 * 109.47026 * 30.02117 * 1 2 3 25 25 H 1.08998 * 109.47205 * 150.01922 * 1 2 3 26 26 H 1.07996 * 119.93517 * 180.02562 * 5 3 2 27 27 H 1.07996 * 119.97935 * 180.29375 * 6 5 3 28 28 H 0.97001 * 119.76976 * 18.50352 * 9 8 2 29 29 H 0.97003 * 119.99939 * 180.02562 * 17 16 14 30 30 H 1.08999 * 109.45752 * 265.79824 * 22 7 6 31 31 H 1.08998 * 109.45596 * 25.75869 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 17 1.3323 2.7005 -0.0007 5 6 3.5834 1.1968 -0.0005 6 6 4.2777 0.0007 0.0051 7 6 3.5913 -1.1971 -0.0006 8 6 2.2021 -1.2013 0.0005 9 7 1.5082 -2.4151 0.0016 10 6 2.1248 -3.5531 0.3700 11 8 1.5123 -4.5998 0.3513 12 6 3.5654 -3.5421 0.8052 13 1 4.0008 -4.5277 0.6406 14 6 3.6409 -3.1998 2.2708 15 1 4.1899 -2.3278 2.5942 16 6 3.0092 -4.0001 3.1990 17 7 2.3404 -5.0617 2.8053 18 14 3.1034 -3.5762 5.0159 19 1 3.9103 -2.3425 5.1952 20 1 1.7334 -3.3533 5.5438 21 1 3.7417 -4.6962 5.7530 22 6 4.3448 -2.5018 -0.0013 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5135 26 1 4.1222 2.1327 -0.0001 27 1 5.3577 0.0037 0.0095 28 1 0.5758 -2.4371 -0.2652 29 1 1.8957 -5.6245 3.4583 30 1 4.4650 -2.8511 -1.0268 31 1 5.3262 -2.3545 0.4494 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:00 Heat of formation + Delta-G solvation = -47.939217 kcal Electronic energy + Delta-G solvation = -18012.798507 eV Core-core repulsion = 15090.370481 eV Total energy + Delta-G solvation = -2922.428026 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.79884 -39.52067 -37.52389 -35.98824 -35.71029 -34.31299 -32.15872 -30.30529 -27.88885 -27.05434 -24.55938 -23.70041 -22.28454 -20.11301 -18.95065 -18.68528 -17.52812 -16.66281 -16.23600 -16.02944 -15.76038 -15.47062 -14.95419 -14.61634 -14.42155 -14.10849 -13.86132 -13.50374 -13.30257 -12.95533 -12.83334 -12.69112 -12.44157 -12.35330 -12.26639 -11.68093 -11.63163 -11.31684 -11.22671 -10.75195 -10.35385 -9.40324 -8.77636 -8.15207 -6.36193 0.25279 0.36392 1.17964 1.35956 1.38434 1.50045 2.06029 2.37340 2.41850 2.84927 3.12960 3.79123 3.89698 3.98563 4.20200 4.32594 4.46502 4.58928 4.65197 4.71348 4.76519 4.80483 5.14373 5.20763 5.25845 5.33370 5.36004 5.56137 5.64632 5.87230 6.03886 6.13865 6.43098 6.77674 7.32592 7.55626 8.85336 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.007126 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.669839 B = 3928.365457 C = 4133.424283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.132 4.132 3 C -0.021 4.021 4 Cl -0.062 7.062 5 C -0.131 4.131 6 C -0.077 4.077 7 C -0.106 4.106 8 C 0.171 3.829 9 N -0.669 5.669 10 C 0.526 3.474 11 O -0.556 6.556 12 C 0.026 3.974 13 H 0.033 0.967 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.008 3.992 17 N -0.890 5.890 18 Si 0.954 3.046 19 H -0.255 1.255 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.064 4.064 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.159 0.841 27 H 0.163 0.837 28 H 0.398 0.602 29 H 0.258 0.742 30 H 0.076 0.924 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 15.237 -6.459 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.135 4.135 3 C -0.048 4.048 4 Cl -0.033 7.033 5 C -0.151 4.151 6 C -0.096 4.096 7 C -0.109 4.109 8 C 0.074 3.926 9 N -0.314 5.314 10 C 0.317 3.683 11 O -0.432 6.432 12 C 0.005 3.995 13 H 0.051 0.949 14 C -0.564 4.564 15 H 0.093 0.907 16 C -0.195 4.195 17 N -0.526 5.526 18 Si 0.779 3.221 19 H -0.179 1.179 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.101 4.101 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.177 0.823 27 H 0.180 0.820 28 H 0.236 0.764 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.324 14.516 -6.348 15.899 hybrid contribution -0.951 -0.400 1.044 1.467 sum 0.373 14.116 -5.304 15.084 Atomic orbital electron populations 1.20740 0.89520 1.03619 1.02893 1.19405 0.97329 0.90058 1.06743 1.20532 0.92712 0.85849 1.05727 1.98330 1.77103 1.30935 1.96919 1.21168 0.91310 0.99800 1.02814 1.21048 1.01287 0.89470 0.97790 1.19829 0.91446 0.96978 1.02660 1.17518 0.91520 0.84741 0.98799 1.43766 1.14745 1.06550 1.66361 1.21961 0.92445 0.81469 0.72438 1.90589 1.68489 1.32315 1.51799 1.18898 0.87376 0.96795 0.96461 0.94863 1.21162 1.34176 1.11541 0.89479 0.90689 1.26013 0.94863 0.94912 1.03709 1.70360 1.32149 1.15116 1.34932 0.85558 0.77607 0.78884 0.80085 1.17853 1.21621 1.20344 1.20527 0.99191 0.90890 0.99509 0.91151 0.89151 0.91619 0.82325 0.81966 0.76392 0.93277 0.90597 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 9.32 71.24 0.66 -2.24 16 2 C -0.13 -4.02 5.90 -19.72 -0.12 -4.14 16 3 C -0.02 -0.56 6.31 22.31 0.14 -0.42 16 4 Cl -0.06 -1.39 27.29 -2.72 -0.07 -1.46 16 5 C -0.13 -3.14 9.83 22.32 0.22 -2.92 16 6 C -0.08 -2.02 9.69 22.24 0.22 -1.80 16 7 C -0.11 -3.59 5.30 -19.76 -0.10 -3.70 16 8 C 0.17 6.19 6.47 38.16 0.25 6.44 16 9 N -0.67 -27.74 5.23 -304.08 -1.59 -29.33 16 10 C 0.53 26.73 6.31 87.62 0.55 27.29 16 11 O -0.56 -32.92 16.31 -3.06 -0.05 -32.97 16 12 C 0.03 1.28 2.46 -12.36 -0.03 1.25 16 13 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.53 -27.65 8.14 25.60 0.21 -27.44 16 15 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 16 C 0.01 0.42 5.30 84.66 0.45 0.87 16 17 N -0.89 -54.10 11.23 21.45 0.24 -53.86 16 18 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C -0.06 -2.34 5.39 29.83 0.16 -2.18 16 23 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.09 1.99 6.90 -2.39 -0.02 1.97 16 25 H 0.06 1.65 6.40 -2.39 -0.02 1.64 16 26 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 28 H 0.40 14.95 6.86 -92.71 -0.64 14.31 16 29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.10 3.17 8.01 -2.39 -0.02 3.15 16 Total: -1.00 -68.09 276.07 3.69 -64.39 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.54 Total: 16.60 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 2.61 Total: -9.00 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.35 Total: -83.18 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.07 Total: -1.46 kcal Total: -68.09 3.69 -64.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds