Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.93065 * 2 1 4 4 C 1.38057 * 120.03949 * 179.97438 * 3 2 1 5 5 C 1.38903 * 119.99461 * 359.97438 * 4 3 2 6 6 C 1.38795 * 119.88583 * 0.02562 * 5 4 3 7 7 C 1.38271 * 119.88036 * 359.73610 * 6 5 4 8 8 Cl 1.73602 * 119.96777 * 180.25729 * 7 6 5 9 9 N 1.39830 * 119.93550 * 180.02562 * 5 4 3 10 10 C 1.34557 * 120.45443 * 18.44035 * 9 5 4 11 11 O 1.21285 * 119.61245 * 180.83481 * 10 9 5 12 12 C 1.50502 * 120.77775 * 0.85880 * 10 9 5 13 13 H 1.08998 * 109.39834 * 204.65175 * 12 10 9 14 14 C 1.50698 * 109.32321 * 84.87219 * 12 10 9 15 15 H 1.08002 * 120.00169 * 239.59901 * 14 12 10 16 16 C 1.37877 * 119.99957 * 59.60020 * 14 12 10 17 17 N 1.31521 * 119.99917 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00095 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47120 * 90.00472 * 18 16 14 20 20 H 1.48497 * 109.47320 * 209.99958 * 18 16 14 21 21 H 1.48500 * 109.47345 * 330.00085 * 18 16 14 22 22 C 1.50662 * 120.16733 * 179.97438 * 4 3 2 23 23 H 1.09002 * 109.47152 * 90.00142 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00242 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00223 * 1 2 3 26 26 H 1.07992 * 119.97418 * 359.96717 * 3 2 1 27 27 H 1.07994 * 120.05790 * 179.97438 * 6 5 4 28 28 H 0.97001 * 119.76670 * 198.46102 * 9 5 4 29 29 H 0.97001 * 119.99464 * 179.97438 * 17 16 14 30 30 H 1.09007 * 109.46129 * 266.08399 * 22 4 3 31 31 H 1.08997 * 109.46548 * 26.06261 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5777 1.2012 0.0005 5 6 4.2744 -0.0004 0.0016 6 6 3.5802 -1.2023 0.0016 7 6 2.1975 -1.1992 0.0061 8 17 1.3269 -2.7011 0.0128 9 7 5.6727 0.0037 0.0027 10 6 6.3512 1.1062 0.3696 11 8 7.5638 1.0977 0.3504 12 6 5.6230 2.3496 0.8042 13 1 6.2599 3.2185 0.6388 14 6 5.2891 2.2453 2.2700 15 1 4.2595 2.2862 2.5936 16 6 6.2980 2.0978 3.1981 17 7 7.5518 2.0475 2.8040 18 14 5.8843 1.9693 5.0151 19 1 5.6813 0.5434 5.3769 20 1 7.0009 2.5295 5.8179 21 1 4.6417 2.7328 5.2951 22 6 4.3323 2.5052 0.0000 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6556 2.1330 -0.0005 27 1 4.1190 -2.1382 0.0020 28 1 6.1568 -0.7937 -0.2632 29 1 8.2616 1.9441 3.4570 30 1 4.5754 2.7837 -1.0255 31 1 3.7151 3.2823 0.4507 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = -31.905942 kcal Electronic energy + Delta-G solvation = -17817.963703 eV Core-core repulsion = 14896.230932 eV Total energy + Delta-G solvation = -2921.732771 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21613 -38.03552 -36.31940 -34.60698 -33.92016 -32.08912 -31.01744 -29.27893 -26.04270 -25.24648 -22.84287 -22.29696 -21.28596 -18.36406 -17.44381 -16.83529 -15.81029 -14.85716 -14.70021 -14.49803 -14.33246 -14.08163 -13.59799 -13.17059 -12.85693 -12.54737 -12.26249 -12.19563 -11.99048 -11.72845 -11.23396 -11.03103 -10.98994 -10.67419 -10.63701 -10.59272 -9.86159 -9.61543 -9.43798 -8.72738 -8.40233 -8.32681 -7.29056 -6.08583 -4.24453 1.50746 1.62110 2.32263 3.24640 3.32169 3.34172 3.70596 3.95598 4.27368 4.39136 4.98497 5.08249 5.18700 5.30089 5.50660 5.66981 5.74124 5.77708 5.90910 6.02115 6.11890 6.20598 6.26301 6.40968 6.65144 6.67287 6.82154 7.10503 7.29490 7.67033 7.75074 8.00223 8.18144 8.78307 9.37155 9.41526 10.92219 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.006768 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.912405 B = 4136.423151 C = 4413.306643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.117 4.117 3 C -0.078 4.078 4 C -0.087 4.087 5 C 0.204 3.796 6 C -0.161 4.161 7 C -0.011 4.011 8 Cl -0.083 7.083 9 N -0.677 5.677 10 C 0.527 3.473 11 O -0.504 6.504 12 C 0.036 3.964 13 H 0.067 0.933 14 C -0.530 4.530 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.848 5.848 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.073 4.073 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.391 0.609 29 H 0.264 0.736 30 H 0.061 0.939 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 -4.397 -6.558 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.090 4.090 5 C 0.105 3.895 6 C -0.183 4.183 7 C -0.038 4.038 8 Cl -0.054 7.054 9 N -0.321 5.321 10 C 0.318 3.682 11 O -0.376 6.376 12 C 0.014 3.986 13 H 0.085 0.915 14 C -0.567 4.567 15 H 0.086 0.914 16 C -0.144 4.144 17 N -0.482 5.482 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.110 4.110 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.227 0.773 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.398 -4.307 -6.428 13.776 hybrid contribution 0.059 -0.901 1.137 1.452 sum -11.339 -5.208 -5.291 13.553 Atomic orbital electron populations 1.20730 0.90853 1.02871 1.02080 1.19492 0.96218 0.91241 1.04987 1.20621 0.92676 0.96889 0.99491 1.19717 0.93440 0.94582 1.01239 1.17418 0.83713 0.92715 0.95635 1.20452 0.92196 0.97306 1.08387 1.20294 0.91357 0.85931 1.06250 1.98319 1.76843 1.33159 1.97064 1.44061 1.03978 1.16970 1.67062 1.21973 0.88037 0.85306 0.72871 1.90630 1.14246 1.83570 1.49139 1.18911 0.91487 0.91888 0.96268 0.91515 1.20803 0.93599 1.53941 0.88382 0.91393 1.25188 0.95146 0.94676 0.99433 1.70170 0.98711 1.45278 1.34060 0.86576 0.78241 0.78402 0.84849 1.20635 1.21006 1.19500 1.20630 0.97630 0.93311 0.99454 0.91508 0.91539 0.91428 0.85108 0.85259 0.77285 0.92590 0.92095 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.62 36.01 0.35 -0.86 16 2 C -0.12 -1.68 5.89 -104.54 -0.62 -2.29 16 3 C -0.08 -1.18 9.34 -39.62 -0.37 -1.55 16 4 C -0.09 -1.55 5.30 -104.46 -0.55 -2.10 16 5 C 0.20 3.78 6.49 -83.76 -0.54 3.24 16 6 C -0.16 -2.62 9.71 -39.36 -0.38 -3.00 16 7 C -0.01 -0.17 6.31 -39.52 -0.25 -0.42 16 8 Cl -0.08 -1.08 27.28 -51.86 -1.41 -2.49 16 9 N -0.68 -13.79 5.36 -10.01 -0.05 -13.85 16 10 C 0.53 12.96 6.31 -11.18 -0.07 12.89 16 11 O -0.50 -14.19 16.31 5.55 0.09 -14.10 16 12 C 0.04 0.85 2.46 -93.09 -0.23 0.63 16 13 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.53 -13.88 8.13 -34.44 -0.28 -14.16 16 15 H 0.07 1.74 7.74 -52.49 -0.41 1.34 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.85 -24.91 11.23 55.43 0.62 -24.28 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 22 C -0.07 -1.37 5.37 -27.97 -0.15 -1.52 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.07 0.74 6.88 -51.93 -0.36 0.38 16 26 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.39 7.08 8.83 -40.82 -0.36 6.72 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.40 8.01 -51.93 -0.42 0.98 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -30.74 279.65 -7.96 -38.71 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -3.21 Total: 3.18 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.19 Total: -7.52 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.57 Total: -38.13 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.41 Total: -2.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.74 -7.96 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.800 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds