Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.93065 * 2 1 4 4 C 1.38057 * 120.03949 * 179.97438 * 3 2 1 5 5 C 1.38903 * 119.99461 * 359.97438 * 4 3 2 6 6 C 1.38795 * 119.88583 * 0.02562 * 5 4 3 7 7 C 1.38271 * 119.88036 * 359.73610 * 6 5 4 8 8 Cl 1.73602 * 119.96777 * 180.25729 * 7 6 5 9 9 N 1.39830 * 119.93550 * 180.02562 * 5 4 3 10 10 C 1.34557 * 120.45443 * 18.44035 * 9 5 4 11 11 O 1.21285 * 119.61245 * 180.83481 * 10 9 5 12 12 C 1.50502 * 120.77775 * 0.85880 * 10 9 5 13 13 H 1.08998 * 109.39834 * 204.65175 * 12 10 9 14 14 C 1.50698 * 109.32321 * 84.87219 * 12 10 9 15 15 H 1.08002 * 120.00169 * 239.59901 * 14 12 10 16 16 C 1.37877 * 119.99957 * 59.60020 * 14 12 10 17 17 N 1.31521 * 119.99917 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00095 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47120 * 90.00472 * 18 16 14 20 20 H 1.48497 * 109.47320 * 209.99958 * 18 16 14 21 21 H 1.48500 * 109.47345 * 330.00085 * 18 16 14 22 22 C 1.50662 * 120.16733 * 179.97438 * 4 3 2 23 23 H 1.09002 * 109.47152 * 90.00142 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00242 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00223 * 1 2 3 26 26 H 1.07992 * 119.97418 * 359.96717 * 3 2 1 27 27 H 1.07994 * 120.05790 * 179.97438 * 6 5 4 28 28 H 0.97001 * 119.76670 * 198.46102 * 9 5 4 29 29 H 0.97001 * 119.99464 * 179.97438 * 17 16 14 30 30 H 1.09007 * 109.46129 * 266.08399 * 22 4 3 31 31 H 1.08997 * 109.46548 * 26.06261 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5777 1.2012 0.0005 5 6 4.2744 -0.0004 0.0016 6 6 3.5802 -1.2023 0.0016 7 6 2.1975 -1.1992 0.0061 8 17 1.3269 -2.7011 0.0128 9 7 5.6727 0.0037 0.0027 10 6 6.3512 1.1062 0.3696 11 8 7.5638 1.0977 0.3504 12 6 5.6230 2.3496 0.8042 13 1 6.2599 3.2185 0.6388 14 6 5.2891 2.2453 2.2700 15 1 4.2595 2.2862 2.5936 16 6 6.2980 2.0978 3.1981 17 7 7.5518 2.0475 2.8040 18 14 5.8843 1.9693 5.0151 19 1 5.6813 0.5434 5.3769 20 1 7.0009 2.5295 5.8179 21 1 4.6417 2.7328 5.2951 22 6 4.3323 2.5052 0.0000 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6556 2.1330 -0.0005 27 1 4.1190 -2.1382 0.0020 28 1 6.1568 -0.7937 -0.2632 29 1 8.2616 1.9441 3.4570 30 1 4.5754 2.7837 -1.0255 31 1 3.7151 3.2823 0.4507 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = -50.622104 kcal Electronic energy + Delta-G solvation = -17818.775297 eV Core-core repulsion = 14896.230932 eV Total energy + Delta-G solvation = -2922.544365 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71777 -39.59281 -37.54887 -36.13578 -35.66782 -33.86445 -32.28219 -30.82853 -27.30534 -26.97826 -24.60093 -23.61237 -22.72136 -19.96466 -18.97637 -18.62516 -17.39880 -16.65632 -16.24976 -15.97434 -15.74403 -15.54852 -14.93767 -14.57785 -14.51263 -14.13393 -13.72084 -13.46502 -13.20802 -12.95874 -12.85888 -12.73384 -12.46016 -12.33731 -12.20316 -11.79285 -11.57064 -11.32935 -11.02703 -10.75463 -10.35707 -9.58383 -8.69862 -8.15196 -6.36431 0.24103 0.35204 1.16527 1.37284 1.38489 1.49203 2.04439 2.37378 2.42029 2.83513 3.12886 3.80379 3.92161 4.03456 4.19541 4.31683 4.49099 4.60016 4.75638 4.79254 4.86614 4.94121 5.08896 5.15056 5.32701 5.34371 5.45845 5.56503 5.64647 5.87243 6.03617 6.14024 6.42718 6.77288 7.32427 7.55791 8.85134 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.006768 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.912405 B = 4136.423151 C = 4413.306643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.074 4.074 4 C -0.103 4.103 5 C 0.168 3.832 6 C -0.158 4.158 7 C -0.020 4.020 8 Cl -0.062 7.062 9 N -0.671 5.671 10 C 0.525 3.475 11 O -0.556 6.556 12 C 0.026 3.974 13 H 0.034 0.966 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.007 3.993 17 N -0.890 5.890 18 Si 0.954 3.046 19 H -0.283 1.283 20 H -0.286 1.286 21 H -0.253 1.253 22 C -0.064 4.064 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.161 0.839 27 H 0.140 0.860 28 H 0.400 0.600 29 H 0.258 0.742 30 H 0.076 0.924 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.810 -4.914 -6.445 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.092 4.092 4 C -0.106 4.106 5 C 0.071 3.929 6 C -0.179 4.179 7 C -0.047 4.047 8 Cl -0.033 7.033 9 N -0.315 5.315 10 C 0.316 3.684 11 O -0.432 6.432 12 C 0.005 3.995 13 H 0.052 0.948 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.195 4.195 17 N -0.526 5.526 18 Si 0.779 3.221 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.177 1.177 22 C -0.101 4.101 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.179 0.821 27 H 0.158 0.842 28 H 0.237 0.763 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.021 -4.845 -6.329 17.005 hybrid contribution 0.989 -0.817 1.019 1.639 sum -14.033 -5.662 -5.310 16.036 Atomic orbital electron populations 1.20834 0.88182 1.03940 1.03583 1.19934 0.98095 0.90522 1.02258 1.20921 0.91454 0.98600 0.98260 1.19797 0.94720 0.93618 1.02420 1.17656 0.82525 0.94140 0.98532 1.20582 0.92967 0.96960 1.07414 1.20470 0.91135 0.87329 1.05813 1.98329 1.76172 1.31909 1.96926 1.43706 1.05176 1.16088 1.66518 1.21965 0.87481 0.86476 0.72430 1.90589 1.16212 1.84639 1.51750 1.18876 0.93544 0.90624 0.96447 0.94801 1.21143 0.93620 1.52230 0.89501 0.90668 1.26023 0.95016 0.94726 1.03755 1.70362 0.99725 1.47462 1.35036 0.85605 0.78471 0.78174 0.79859 1.20873 1.21178 1.17672 1.20507 0.95288 0.94728 0.99566 0.89648 0.89763 0.91155 0.82123 0.84200 0.76347 0.93267 0.90544 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.62 71.24 0.69 -1.22 16 2 C -0.11 -2.62 5.89 -19.81 -0.12 -2.74 16 3 C -0.07 -1.96 9.34 22.24 0.21 -1.75 16 4 C -0.10 -3.48 5.30 -19.76 -0.10 -3.58 16 5 C 0.17 6.07 6.49 38.16 0.25 6.32 16 6 C -0.16 -4.83 9.71 22.41 0.22 -4.61 16 7 C -0.02 -0.55 6.31 22.31 0.14 -0.41 16 8 Cl -0.06 -1.43 27.28 -2.72 -0.07 -1.51 16 9 N -0.67 -27.78 5.36 -304.09 -1.63 -29.41 16 10 C 0.53 26.72 6.31 87.63 0.55 27.28 16 11 O -0.56 -32.95 16.31 -3.04 -0.05 -33.00 16 12 C 0.03 1.30 2.46 -12.39 -0.03 1.27 16 13 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 14 C -0.53 -27.73 8.13 25.60 0.21 -27.52 16 15 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 16 C 0.01 0.41 5.30 84.65 0.45 0.86 16 17 N -0.89 -54.21 11.23 21.45 0.24 -53.97 16 18 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.25 -10.74 7.11 99.48 0.71 -10.04 16 22 C -0.06 -2.33 5.37 29.79 0.16 -2.17 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 25 H 0.07 1.22 6.88 -2.38 -0.02 1.21 16 26 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 27 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 28 H 0.40 14.85 8.83 -92.71 -0.82 14.03 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.10 3.17 8.01 -2.39 -0.02 3.15 16 Total: -1.00 -68.17 279.65 3.48 -64.69 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.35 Total: 15.82 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 2.62 Total: -8.27 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -1.39 Total: -83.38 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.51 kcal Total: -68.17 3.48 -64.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.073 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds