Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38303 * 119.93814 * 2 1 4 4 C 1.38050 * 120.04566 * 180.02562 * 3 2 1 5 5 C 1.38905 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.38805 * 119.87672 * 359.97438 * 5 4 3 7 7 C 1.38262 * 119.88461 * 0.02562 * 6 5 4 8 8 Cl 1.73603 * 119.96695 * 179.97438 * 7 6 5 9 9 N 1.39820 * 119.93813 * 179.71650 * 5 4 3 10 10 C 1.34717 * 120.33889 * 19.03016 * 9 5 4 11 11 O 1.21287 * 119.57272 * 180.56904 * 10 9 5 12 12 C 1.50498 * 120.81390 * 0.29576 * 10 9 5 13 13 H 1.08997 * 109.40048 * 85.19427 * 12 10 9 14 14 C 1.50698 * 109.39974 * 204.93260 * 12 10 9 15 15 H 1.07999 * 120.00435 * 120.44265 * 14 12 10 16 16 C 1.37881 * 119.99752 * 300.44852 * 14 12 10 17 17 N 1.31510 * 119.99679 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00019 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46910 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47142 * 119.99636 * 18 16 14 21 21 H 1.48504 * 109.46825 * 239.99742 * 18 16 14 22 22 C 1.50659 * 120.17178 * 179.97438 * 4 3 2 23 23 H 1.09005 * 109.46926 * 89.99482 * 1 2 3 24 24 H 1.08993 * 109.47175 * 209.99527 * 1 2 3 25 25 H 1.09004 * 109.46723 * 330.00146 * 1 2 3 26 26 H 1.08001 * 119.97211 * 0.02562 * 3 2 1 27 27 H 1.08008 * 120.05161 * 179.97438 * 6 5 4 28 28 H 0.96996 * 119.77541 * 198.46560 * 9 5 4 29 29 H 0.97010 * 119.99607 * 180.02562 * 17 16 14 30 30 H 1.08998 * 109.46403 * 266.11202 * 22 4 3 31 31 H 1.09007 * 109.45775 * 26.07824 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1985 0.0000 4 6 3.5777 1.2011 -0.0005 5 6 4.2744 -0.0006 -0.0005 6 6 3.5800 -1.2025 0.0005 7 6 2.1974 -1.1992 0.0011 8 17 1.3268 -2.7012 0.0017 9 7 5.6726 0.0035 -0.0071 10 6 6.3516 1.1056 0.3659 11 8 7.5643 1.0972 0.3451 12 6 5.6239 2.3487 0.8021 13 1 5.3836 2.2742 1.8626 14 6 6.5042 3.5503 0.5734 15 1 6.1746 4.3448 -0.0797 16 6 7.7306 3.6352 1.1978 17 7 8.1318 2.6679 1.9933 18 14 8.8215 5.1250 0.9150 19 1 8.1449 6.0644 -0.0150 20 1 9.0747 5.8061 2.2100 21 1 10.1123 4.6883 0.3246 22 6 4.3325 2.5050 -0.0011 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.6557 2.1330 0.0004 27 1 4.1189 -2.1385 0.0001 28 1 6.1554 -0.7944 -0.2738 29 1 8.9944 2.7279 2.4330 30 1 4.5743 2.7842 -1.0266 31 1 3.7156 3.2818 0.4508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984410.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = -21.118839 kcal Electronic energy + Delta-G solvation = -17551.665510 eV Core-core repulsion = 14630.400502 eV Total energy + Delta-G solvation = -2921.265007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25005 -38.07397 -36.40213 -34.62614 -33.88010 -32.00459 -31.06865 -29.35886 -26.09521 -25.18323 -22.88634 -22.27903 -21.25026 -18.32330 -17.53798 -16.44523 -15.96626 -15.17434 -14.79453 -14.48173 -14.32614 -14.05611 -13.75937 -13.19657 -12.82849 -12.50452 -12.38557 -12.27594 -11.83417 -11.75621 -11.48318 -11.03722 -10.86706 -10.72877 -10.59741 -10.47696 -9.72893 -9.67329 -9.26292 -8.56671 -8.43213 -8.27896 -7.37665 -6.00852 -4.07944 1.37386 1.49868 2.22137 3.31590 3.39854 3.42299 3.62660 3.91127 4.24383 4.45494 4.89189 4.99283 5.19710 5.32516 5.40831 5.61708 5.66393 5.71675 5.85492 5.96021 6.06203 6.19587 6.25096 6.39242 6.56503 6.65731 6.74217 7.04800 7.34381 7.63929 7.86887 7.92690 8.30874 8.88092 9.45709 9.58865 11.07543 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042827 B = 0.005054 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.640795 B = 5538.578742 C = 6045.897323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.076 4.076 4 C -0.109 4.109 5 C 0.196 3.804 6 C -0.163 4.163 7 C -0.010 4.010 8 Cl -0.080 7.080 9 N -0.687 5.687 10 C 0.504 3.496 11 O -0.462 6.462 12 C 0.042 3.958 13 H 0.060 0.940 14 C -0.540 4.540 15 H 0.065 0.935 16 C 0.082 3.918 17 N -0.844 5.844 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.070 4.070 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.389 0.611 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -6.515 -3.659 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.112 4.112 5 C 0.097 3.903 6 C -0.185 4.185 7 C -0.037 4.037 8 Cl -0.052 7.052 9 N -0.333 5.333 10 C 0.293 3.707 11 O -0.328 6.328 12 C 0.021 3.979 13 H 0.077 0.923 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.126 4.126 17 N -0.478 5.478 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.107 4.107 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.226 0.774 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.052 -6.478 -3.460 14.977 hybrid contribution 0.838 -0.065 -0.186 0.861 sum -12.214 -6.543 -3.646 14.328 Atomic orbital electron populations 1.20739 0.90738 1.02891 1.02242 1.19529 0.96318 0.91228 1.04937 1.20670 0.92647 0.96991 0.99170 1.20061 0.93711 0.95135 1.02273 1.17554 0.84106 0.92698 0.95969 1.20498 0.92184 0.97362 1.08450 1.20338 0.91405 0.86052 1.05918 1.98326 1.76800 1.33007 1.97021 1.44702 1.03730 1.17408 1.67491 1.22675 0.88912 0.83765 0.75356 1.90691 1.13758 1.81672 1.46695 1.18767 0.91009 0.91337 0.96796 0.92266 1.20691 1.02748 1.03322 1.30965 0.91704 1.24923 0.97568 0.95691 0.94442 1.70030 1.19969 1.30566 1.27241 0.86491 0.80679 0.82568 0.77925 1.19667 1.21017 1.20998 1.20617 0.96487 0.91939 1.01669 0.91397 0.91382 0.91477 0.84934 0.85137 0.77439 0.93082 0.90748 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.61 36.01 0.35 -0.77 16 2 C -0.12 -1.55 5.89 -104.55 -0.62 -2.17 16 3 C -0.08 -1.06 9.34 -39.63 -0.37 -1.43 16 4 C -0.11 -1.84 5.66 -104.46 -0.59 -2.43 16 5 C 0.20 3.41 6.50 -83.76 -0.54 2.87 16 6 C -0.16 -2.43 9.70 -39.36 -0.38 -2.81 16 7 C -0.01 -0.14 6.31 -39.52 -0.25 -0.39 16 8 Cl -0.08 -0.97 27.28 -51.86 -1.41 -2.38 16 9 N -0.69 -13.44 5.37 -9.97 -0.05 -13.49 16 10 C 0.50 12.35 7.29 -11.11 -0.08 12.27 16 11 O -0.46 -13.19 14.06 5.55 0.08 -13.11 16 12 C 0.04 1.02 2.39 -93.08 -0.22 0.79 16 13 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 14 C -0.54 -14.53 8.39 -34.44 -0.29 -14.82 16 15 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 16 C 0.08 2.29 4.77 -17.82 -0.08 2.20 16 17 N -0.84 -24.96 10.76 55.43 0.60 -24.36 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.07 -1.33 5.25 -27.96 -0.15 -1.48 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.67 6.89 -51.93 -0.36 0.32 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.39 6.77 8.84 -40.82 -0.36 6.41 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 30 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 31 H 0.08 1.32 8.06 -51.92 -0.42 0.90 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -30.69 277.84 -8.07 -38.76 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.21 Total: 2.08 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.23 Total: -8.17 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.54 Total: -37.85 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.41 Total: -2.38 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.69 -8.07 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984410.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.641 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds