Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38303 * 119.93814 * 2 1 4 4 C 1.38050 * 120.04566 * 180.02562 * 3 2 1 5 5 C 1.38905 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.38805 * 119.87672 * 359.97438 * 5 4 3 7 7 C 1.38262 * 119.88461 * 0.02562 * 6 5 4 8 8 Cl 1.73603 * 119.96695 * 179.97438 * 7 6 5 9 9 N 1.39820 * 119.93813 * 179.71650 * 5 4 3 10 10 C 1.34717 * 120.33889 * 19.03016 * 9 5 4 11 11 O 1.21287 * 119.57272 * 180.56904 * 10 9 5 12 12 C 1.50498 * 120.81390 * 0.29576 * 10 9 5 13 13 H 1.08997 * 109.40048 * 85.19427 * 12 10 9 14 14 C 1.50698 * 109.39974 * 204.93260 * 12 10 9 15 15 H 1.07999 * 120.00435 * 120.44265 * 14 12 10 16 16 C 1.37881 * 119.99752 * 300.44852 * 14 12 10 17 17 N 1.31510 * 119.99679 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00019 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46910 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47142 * 119.99636 * 18 16 14 21 21 H 1.48504 * 109.46825 * 239.99742 * 18 16 14 22 22 C 1.50659 * 120.17178 * 179.97438 * 4 3 2 23 23 H 1.09005 * 109.46926 * 89.99482 * 1 2 3 24 24 H 1.08993 * 109.47175 * 209.99527 * 1 2 3 25 25 H 1.09004 * 109.46723 * 330.00146 * 1 2 3 26 26 H 1.08001 * 119.97211 * 0.02562 * 3 2 1 27 27 H 1.08008 * 120.05161 * 179.97438 * 6 5 4 28 28 H 0.96996 * 119.77541 * 198.46560 * 9 5 4 29 29 H 0.97010 * 119.99607 * 180.02562 * 17 16 14 30 30 H 1.08998 * 109.46403 * 266.11202 * 22 4 3 31 31 H 1.09007 * 109.45775 * 26.07824 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1985 0.0000 4 6 3.5777 1.2011 -0.0005 5 6 4.2744 -0.0006 -0.0005 6 6 3.5800 -1.2025 0.0005 7 6 2.1974 -1.1992 0.0011 8 17 1.3268 -2.7012 0.0017 9 7 5.6726 0.0035 -0.0071 10 6 6.3516 1.1056 0.3659 11 8 7.5643 1.0972 0.3451 12 6 5.6239 2.3487 0.8021 13 1 5.3836 2.2742 1.8626 14 6 6.5042 3.5503 0.5734 15 1 6.1746 4.3448 -0.0797 16 6 7.7306 3.6352 1.1978 17 7 8.1318 2.6679 1.9933 18 14 8.8215 5.1250 0.9150 19 1 8.1449 6.0644 -0.0150 20 1 9.0747 5.8061 2.2100 21 1 10.1123 4.6883 0.3246 22 6 4.3325 2.5050 -0.0011 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.6557 2.1330 0.0004 27 1 4.1189 -2.1385 0.0001 28 1 6.1554 -0.7944 -0.2738 29 1 8.9944 2.7279 2.4330 30 1 4.5743 2.7842 -1.0266 31 1 3.7156 3.2818 0.4508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984410.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = -39.805133 kcal Electronic energy + Delta-G solvation = -17552.475808 eV Core-core repulsion = 14630.400502 eV Total energy + Delta-G solvation = -2922.075306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69669 -39.60935 -37.55915 -36.08013 -35.64795 -33.77173 -32.28793 -30.91061 -27.25230 -26.93112 -24.62766 -23.56334 -22.66989 -19.82364 -19.06867 -18.26421 -17.67552 -16.64519 -16.39013 -15.98476 -15.71233 -15.52189 -14.97699 -14.53883 -14.53054 -14.19503 -13.57700 -13.47004 -13.08337 -12.99283 -12.96959 -12.75162 -12.39232 -12.27917 -12.10390 -11.77127 -11.56288 -11.20245 -11.03148 -10.56202 -10.27856 -9.63768 -8.74148 -8.10237 -6.22215 0.16761 0.30062 1.13568 1.40712 1.43678 1.54314 2.06044 2.37564 2.46966 2.75579 3.27424 3.77472 3.89136 4.00599 4.21629 4.27621 4.48394 4.60543 4.65229 4.77753 4.84183 4.93032 5.05185 5.17775 5.29332 5.39206 5.46933 5.52328 5.73672 5.81158 6.05923 6.15731 6.46992 6.84651 7.46495 7.65606 8.98057 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042827 B = 0.005054 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.640795 B = 5538.578742 C = 6045.897323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.070 4.070 4 C -0.123 4.123 5 C 0.163 3.837 6 C -0.155 4.155 7 C -0.017 4.017 8 Cl -0.060 7.060 9 N -0.679 5.679 10 C 0.503 3.497 11 O -0.517 6.517 12 C 0.034 3.966 13 H 0.033 0.967 14 C -0.552 4.552 15 H 0.070 0.930 16 C 0.027 3.973 17 N -0.881 5.881 18 Si 0.957 3.043 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.293 1.293 22 C -0.058 4.058 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.144 0.856 28 H 0.399 0.601 29 H 0.254 0.746 30 H 0.071 0.929 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.784 -6.535 -4.414 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.088 4.088 4 C -0.126 4.126 5 C 0.065 3.935 6 C -0.176 4.176 7 C -0.045 4.045 8 Cl -0.031 7.031 9 N -0.326 5.326 10 C 0.293 3.707 11 O -0.388 6.388 12 C 0.013 3.987 13 H 0.051 0.949 14 C -0.589 4.589 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.516 5.516 18 Si 0.783 3.217 19 H -0.181 1.181 20 H -0.202 1.202 21 H -0.219 1.219 22 C -0.095 4.095 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.180 0.820 27 H 0.162 0.838 28 H 0.237 0.763 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.012 -6.519 -4.231 17.799 hybrid contribution 1.508 -0.193 0.026 1.520 sum -14.505 -6.712 -4.205 16.526 Atomic orbital electron populations 1.20847 0.88100 1.04101 1.03605 1.19952 0.98152 0.90481 1.02150 1.20938 0.91292 0.98726 0.97849 1.20024 0.94994 0.93823 1.03794 1.17749 0.82767 0.94100 0.98847 1.20613 0.92885 0.96963 1.07182 1.20509 0.91200 0.87418 1.05338 1.98339 1.76130 1.31725 1.96868 1.44184 1.05001 1.16387 1.66980 1.22520 0.88327 0.84993 0.74889 1.90653 1.15733 1.82919 1.49516 1.18721 0.93164 0.90717 0.96143 0.94892 1.21128 1.03149 1.04354 1.30306 0.91202 1.25770 0.99237 0.98267 0.94403 1.70190 1.20061 1.32596 1.28730 0.85532 0.78365 0.79605 0.78247 1.18057 1.20166 1.21947 1.20423 0.94524 0.93995 1.00595 0.89793 0.90960 0.89606 0.82036 0.83836 0.76347 0.93704 0.91090 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.61 71.24 0.68 -1.04 16 2 C -0.11 -2.39 5.89 -19.82 -0.12 -2.50 16 3 C -0.07 -1.73 9.34 22.24 0.21 -1.52 16 4 C -0.12 -4.02 5.66 -19.76 -0.11 -4.13 16 5 C 0.16 5.54 6.50 38.16 0.25 5.79 16 6 C -0.15 -4.34 9.70 22.41 0.22 -4.13 16 7 C -0.02 -0.43 6.31 22.31 0.14 -0.29 16 8 Cl -0.06 -1.25 27.28 -2.72 -0.07 -1.32 16 9 N -0.68 -27.11 5.37 -303.89 -1.63 -28.74 16 10 C 0.50 25.60 7.29 87.60 0.64 26.24 16 11 O -0.52 -30.97 14.06 -3.05 -0.04 -31.02 16 12 C 0.03 1.68 2.39 -12.39 -0.03 1.65 16 13 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.55 -30.34 8.39 25.60 0.21 -30.13 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C 0.03 1.56 4.77 84.66 0.40 1.96 16 17 N -0.88 -54.18 10.76 21.45 0.23 -53.95 16 18 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 C -0.06 -2.18 5.25 29.80 0.16 -2.03 16 23 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.07 1.11 6.89 -2.39 -0.02 1.10 16 25 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 26 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.40 14.23 8.84 -92.71 -0.82 13.41 16 29 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.07 2.67 8.09 -2.39 -0.02 2.66 16 31 H 0.10 3.16 8.06 -2.38 -0.02 3.14 16 Total: -1.00 -68.68 277.84 3.51 -65.17 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.35 Total: 12.96 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 2.65 Total: -10.13 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.40 Total: -82.69 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.04 Total: -31.02 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.32 kcal Total: -68.68 3.51 -65.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984410.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.362 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds