Wall clock time and date at job start Mon Mar 30 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38153 * 119.96286 * 2 1 4 4 C 1.38812 * 119.90837 * 180.23802 * 3 2 1 5 5 C 1.38885 * 119.89192 * 359.75026 * 4 3 2 6 6 C 1.38042 * 119.98661 * 0.02562 * 5 4 3 7 7 C 1.38361 * 119.95991 * 179.74692 * 2 1 3 8 8 Cl 1.73599 * 119.94255 * 0.04032 * 7 2 1 9 9 C 1.50660 * 119.84356 * 180.02562 * 5 4 3 10 10 C 1.52877 * 109.54029 * 326.07331 * 9 5 4 11 11 H 1.08993 * 109.37104 * 288.42452 * 10 9 5 12 12 C 1.50705 * 109.33688 * 168.65968 * 10 9 5 13 13 H 1.07996 * 120.00176 * 359.57020 * 12 10 9 14 14 C 1.37880 * 119.99734 * 179.56943 * 12 10 9 15 15 N 1.31510 * 120.00120 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99709 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47093 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47181 * 120.00023 * 16 14 12 19 19 H 1.48500 * 109.46660 * 239.99903 * 16 14 12 20 20 C 1.50501 * 109.92832 * 48.55502 * 10 9 5 21 21 O 1.21285 * 119.61378 * 144.82000 * 20 10 9 22 22 N 1.34563 * 120.77206 * 324.84245 * 20 10 9 23 23 H 1.08992 * 109.47361 * 270.25051 * 1 2 3 24 24 H 1.09007 * 109.46469 * 30.25090 * 1 2 3 25 25 H 1.08998 * 109.46997 * 150.24324 * 1 2 3 26 26 H 1.07996 * 120.04637 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.99494 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.46626 * 86.07319 * 9 5 4 29 29 H 1.09001 * 109.45938 * 206.03408 * 9 5 4 30 30 H 0.96999 * 120.00046 * 180.02562 * 15 14 12 31 31 H 0.96993 * 119.77614 * 180.81485 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1969 0.0000 4 6 3.5851 1.1956 -0.0050 5 6 4.2761 -0.0092 -0.0047 6 6 3.5822 -1.2025 0.0000 7 6 2.1980 -1.1987 0.0053 8 17 1.3274 -2.7006 0.0109 9 6 5.7827 -0.0093 -0.0096 10 6 6.2916 1.1844 -0.8178 11 1 6.1028 1.0106 -1.8771 12 6 7.7732 1.3441 -0.5931 13 1 8.2955 0.6663 0.0658 14 6 8.4618 2.3554 -1.2287 15 7 7.8258 3.1804 -2.0315 16 14 10.2984 2.5529 -0.9507 17 1 10.7723 1.5052 -0.0110 18 1 11.0125 2.4167 -2.2456 19 1 10.5703 3.8941 -0.3741 20 6 5.5821 2.4384 -0.3827 21 8 6.1825 3.4921 -0.3674 22 7 4.2895 2.4041 -0.0101 23 1 -0.3634 0.0045 1.0276 24 1 -0.3632 0.8878 -0.5178 25 1 -0.3633 -0.8921 -0.5100 26 1 1.6572 2.1322 0.0004 27 1 4.1195 -2.1395 -0.0003 28 1 6.1492 0.0631 1.0143 29 1 6.1443 -0.9337 -0.4599 30 1 8.3103 3.8916 -2.4790 31 1 3.8431 3.2229 0.2564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984418.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:40 Heat of formation + Delta-G solvation = -21.844917 kcal Electronic energy + Delta-G solvation = -17550.196754 eV Core-core repulsion = 14628.900262 eV Total energy + Delta-G solvation = -2921.296492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26098 -38.07304 -36.31108 -34.53905 -33.95727 -32.42209 -30.69450 -29.00168 -27.09354 -24.38887 -22.81371 -22.40602 -21.51323 -18.32221 -17.14022 -16.49506 -15.89285 -15.52726 -15.17683 -14.42009 -14.10852 -14.03627 -13.73591 -13.00383 -12.75379 -12.60007 -12.43561 -12.25801 -11.80256 -11.74898 -11.55527 -11.12373 -10.89609 -10.67170 -10.59966 -10.44080 -9.69749 -9.65421 -9.26329 -8.56586 -8.44637 -8.29259 -7.38478 -6.01019 -4.08004 1.41392 1.46668 2.34977 3.31762 3.40006 3.42563 3.61938 3.87425 4.23846 4.45519 4.85403 4.90546 5.23111 5.34001 5.41703 5.57313 5.59652 5.70306 5.82794 5.92561 6.12677 6.19042 6.28309 6.42829 6.48324 6.65195 6.70813 7.04064 7.34659 7.63065 7.87028 7.92271 8.30452 8.88251 9.44766 9.58834 11.07606 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.038969 B = 0.005147 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.343848 B = 5438.982335 C = 6008.957832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.053 4.053 3 C -0.164 4.164 4 C 0.199 3.801 5 C -0.112 4.112 6 C -0.073 4.073 7 C -0.074 4.074 8 Cl -0.085 7.085 9 C -0.068 4.068 10 C 0.042 3.958 11 H 0.060 0.940 12 C -0.539 4.539 13 H 0.065 0.935 14 C 0.082 3.918 15 N -0.846 5.846 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.504 3.496 21 O -0.463 6.463 22 N -0.687 5.687 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.259 0.741 31 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 -7.582 3.755 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.185 4.185 4 C 0.099 3.901 5 C -0.116 4.116 6 C -0.092 4.092 7 C -0.102 4.102 8 Cl -0.057 7.057 9 C -0.106 4.106 10 C 0.021 3.979 11 H 0.078 0.922 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.126 4.126 15 N -0.479 5.479 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.293 3.707 21 O -0.329 6.329 22 N -0.333 5.333 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.751 -6.988 3.546 14.966 hybrid contribution 0.513 0.509 0.187 0.747 sum -12.238 -6.479 3.733 14.341 Atomic orbital electron populations 1.20819 0.90659 1.03136 1.02542 1.19368 0.96089 0.90850 0.99160 1.20504 0.91845 0.97651 1.08547 1.17816 0.90734 0.86638 0.94915 1.19873 0.97530 0.90658 1.03491 1.20698 0.91405 0.98154 0.98954 1.20510 0.92012 0.85904 1.11789 1.98313 1.76964 1.33067 1.97327 1.20601 0.87418 1.00863 1.01673 1.18770 0.95926 0.86434 0.96781 0.92221 1.20695 0.90246 1.16348 1.30373 0.91700 1.24921 0.98276 0.94967 0.94428 1.70018 1.35463 1.15600 1.26836 0.86491 0.85164 0.78081 0.77932 1.19659 1.21012 1.20998 1.22634 0.78591 0.94182 0.75331 1.90688 1.63214 1.32265 1.46766 1.44692 1.13627 1.07619 1.67313 0.90976 0.91384 0.90976 0.85292 0.84837 0.90766 0.90501 0.93078 0.77451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.61 36.01 0.35 -0.81 16 2 C -0.05 -0.70 5.88 -104.61 -0.62 -1.32 16 3 C -0.16 -2.31 9.58 -39.40 -0.38 -2.69 16 4 C 0.20 3.40 6.50 -83.73 -0.54 2.86 16 5 C -0.11 -1.93 5.66 -104.47 -0.59 -2.52 16 6 C -0.07 -1.08 9.47 -39.58 -0.37 -1.45 16 7 C -0.07 -1.03 6.32 -39.47 -0.25 -1.28 16 8 Cl -0.09 -1.03 27.28 -51.86 -1.41 -2.45 16 9 C -0.07 -1.31 5.24 -27.97 -0.15 -1.46 16 10 C 0.04 1.02 2.39 -93.08 -0.22 0.80 16 11 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 12 C -0.54 -14.56 8.37 -34.44 -0.29 -14.85 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 14 C 0.08 2.30 4.77 -17.82 -0.08 2.21 16 15 N -0.85 -24.97 10.81 55.43 0.60 -24.38 16 16 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.50 12.30 7.29 -11.18 -0.08 12.21 16 21 O -0.46 -13.17 14.11 5.55 0.08 -13.09 16 22 N -0.69 -13.25 5.36 -10.00 -0.05 -13.30 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.07 0.71 6.89 -51.93 -0.36 0.35 16 26 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 28 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 29 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 6.61 8.83 -40.82 -0.36 6.25 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -30.71 277.90 -8.06 -38.78 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.21 Total: 2.01 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -3.23 Total: -8.29 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.55 Total: -37.68 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.41 Total: -2.45 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.71 -8.06 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984418.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.932 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds