Wall clock time and date at job start Mon Mar 30 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38153 * 119.96286 * 2 1 4 4 C 1.38812 * 119.90837 * 180.23802 * 3 2 1 5 5 C 1.38885 * 119.89192 * 359.75026 * 4 3 2 6 6 C 1.38042 * 119.98661 * 0.02562 * 5 4 3 7 7 C 1.38361 * 119.95991 * 179.74692 * 2 1 3 8 8 Cl 1.73599 * 119.94255 * 0.04032 * 7 2 1 9 9 C 1.50660 * 119.84356 * 180.02562 * 5 4 3 10 10 C 1.52877 * 109.54029 * 326.07331 * 9 5 4 11 11 H 1.08993 * 109.37104 * 288.42452 * 10 9 5 12 12 C 1.50705 * 109.33688 * 168.65968 * 10 9 5 13 13 H 1.07996 * 120.00176 * 359.57020 * 12 10 9 14 14 C 1.37880 * 119.99734 * 179.56943 * 12 10 9 15 15 N 1.31510 * 120.00120 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99709 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47093 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47181 * 120.00023 * 16 14 12 19 19 H 1.48500 * 109.46660 * 239.99903 * 16 14 12 20 20 C 1.50501 * 109.92832 * 48.55502 * 10 9 5 21 21 O 1.21285 * 119.61378 * 144.82000 * 20 10 9 22 22 N 1.34563 * 120.77206 * 324.84245 * 20 10 9 23 23 H 1.08992 * 109.47361 * 270.25051 * 1 2 3 24 24 H 1.09007 * 109.46469 * 30.25090 * 1 2 3 25 25 H 1.08998 * 109.46997 * 150.24324 * 1 2 3 26 26 H 1.07996 * 120.04637 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.99494 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.46626 * 86.07319 * 9 5 4 29 29 H 1.09001 * 109.45938 * 206.03408 * 9 5 4 30 30 H 0.96999 * 120.00046 * 180.02562 * 15 14 12 31 31 H 0.96993 * 119.77614 * 180.81485 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1969 0.0000 4 6 3.5851 1.1956 -0.0050 5 6 4.2761 -0.0092 -0.0047 6 6 3.5822 -1.2025 0.0000 7 6 2.1980 -1.1987 0.0053 8 17 1.3274 -2.7006 0.0109 9 6 5.7827 -0.0093 -0.0096 10 6 6.2916 1.1844 -0.8178 11 1 6.1028 1.0106 -1.8771 12 6 7.7732 1.3441 -0.5931 13 1 8.2955 0.6663 0.0658 14 6 8.4618 2.3554 -1.2287 15 7 7.8258 3.1804 -2.0315 16 14 10.2984 2.5529 -0.9507 17 1 10.7723 1.5052 -0.0110 18 1 11.0125 2.4167 -2.2456 19 1 10.5703 3.8941 -0.3741 20 6 5.5821 2.4384 -0.3827 21 8 6.1825 3.4921 -0.3674 22 7 4.2895 2.4041 -0.0101 23 1 -0.3634 0.0045 1.0276 24 1 -0.3632 0.8878 -0.5178 25 1 -0.3633 -0.8921 -0.5100 26 1 1.6572 2.1322 0.0004 27 1 4.1195 -2.1395 -0.0003 28 1 6.1492 0.0631 1.0143 29 1 6.1443 -0.9337 -0.4599 30 1 8.3103 3.8916 -2.4790 31 1 3.8431 3.2229 0.2564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984418.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:40 Heat of formation + Delta-G solvation = -40.518875 kcal Electronic energy + Delta-G solvation = -17551.006518 eV Core-core repulsion = 14628.900262 eV Total energy + Delta-G solvation = -2922.106256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.70899 -39.61011 -37.48345 -35.99892 -35.66129 -34.09350 -32.23468 -30.30157 -28.53039 -26.05395 -24.42148 -23.70832 -22.94619 -19.88876 -18.73833 -18.19553 -17.57896 -16.86539 -16.58361 -16.36848 -15.57834 -15.27897 -14.97555 -14.57787 -14.48897 -13.94937 -13.68350 -13.49441 -13.13343 -12.98051 -12.94021 -12.75337 -12.44258 -12.28434 -12.24274 -11.73398 -11.54641 -11.19979 -10.99199 -10.56065 -10.28856 -9.64024 -8.75282 -8.11030 -6.22961 0.17303 0.30378 1.26096 1.40347 1.43167 1.53903 2.04811 2.34996 2.46238 2.75478 3.26526 3.72780 3.81836 4.09061 4.20123 4.25930 4.46881 4.54933 4.64517 4.73985 4.87092 4.90861 5.08388 5.16375 5.27425 5.32085 5.42411 5.48061 5.72197 5.78240 6.05570 6.17138 6.46322 6.83783 7.45815 7.65359 8.97488 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.038969 B = 0.005147 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.343848 B = 5438.982335 C = 6008.957832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.049 4.049 3 C -0.151 4.151 4 C 0.168 3.832 5 C -0.130 4.130 6 C -0.071 4.071 7 C -0.074 4.074 8 Cl -0.064 7.064 9 C -0.057 4.057 10 C 0.034 3.966 11 H 0.033 0.967 12 C -0.553 4.553 13 H 0.068 0.932 14 C 0.028 3.972 15 N -0.881 5.881 16 Si 0.957 3.043 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.291 1.291 20 C 0.504 3.496 21 O -0.517 6.517 22 N -0.677 5.677 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.255 0.745 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.239 -9.185 4.516 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.172 4.172 4 C 0.070 3.930 5 C -0.133 4.133 6 C -0.090 4.090 7 C -0.101 4.101 8 Cl -0.035 7.035 9 C -0.094 4.094 10 C 0.013 3.987 11 H 0.051 0.949 12 C -0.590 4.590 13 H 0.086 0.914 14 C -0.176 4.176 15 N -0.516 5.516 16 Si 0.782 3.218 17 H -0.182 1.182 18 H -0.201 1.201 19 H -0.218 1.218 20 C 0.293 3.707 21 O -0.388 6.388 22 N -0.323 5.323 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.172 0.828 27 H 0.168 0.832 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -14.758 -8.658 4.324 17.648 hybrid contribution 0.907 0.853 -0.026 1.245 sum -13.852 -7.805 4.297 16.470 Atomic orbital electron populations 1.20915 0.87995 1.04264 1.03906 1.19775 0.97933 0.90066 0.97238 1.20759 0.90449 0.99328 1.06688 1.18064 0.91980 0.85493 0.97421 1.19746 0.96260 0.91848 1.05437 1.20811 0.92085 0.97848 0.98233 1.20687 0.91916 0.87197 1.10324 1.98327 1.76326 1.31730 1.97143 1.20387 0.89346 0.99132 1.00542 1.18708 0.95199 0.88740 0.96071 0.94905 1.21118 0.92055 1.16031 1.29801 0.91373 1.25755 1.02566 0.94883 0.94369 1.70172 1.36886 1.16276 1.28235 0.85534 0.80256 0.77716 0.78257 1.18207 1.20137 1.21799 1.22404 0.80081 0.93301 0.74921 1.90651 1.65080 1.33549 1.49541 1.44144 1.12193 1.09218 1.66746 0.89335 0.89723 0.90487 0.82780 0.83194 0.91180 0.89104 0.93636 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.61 71.24 0.68 -1.12 16 2 C -0.05 -1.11 5.88 -19.86 -0.12 -1.23 16 3 C -0.15 -3.86 9.58 22.39 0.21 -3.64 16 4 C 0.17 5.57 6.50 38.15 0.25 5.82 16 5 C -0.13 -4.34 5.66 -19.77 -0.11 -4.45 16 6 C -0.07 -1.94 9.47 22.27 0.21 -1.72 16 7 C -0.07 -1.80 6.32 22.34 0.14 -1.66 16 8 Cl -0.06 -1.33 27.28 -2.72 -0.07 -1.40 16 9 C -0.06 -2.20 5.24 29.79 0.16 -2.04 16 10 C 0.03 1.71 2.39 -12.39 -0.03 1.68 16 11 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 12 C -0.55 -30.62 8.37 25.60 0.21 -30.41 16 13 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 14 C 0.03 1.62 4.77 84.66 0.40 2.03 16 15 N -0.88 -54.08 10.81 21.45 0.23 -53.85 16 16 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 C 0.50 25.42 7.29 87.63 0.64 26.06 16 21 O -0.52 -30.70 14.11 -3.04 -0.04 -30.74 16 22 N -0.68 -26.30 5.36 -304.05 -1.63 -27.93 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 25 H 0.08 1.18 6.89 -2.39 -0.02 1.16 16 26 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.07 2.72 8.09 -2.39 -0.02 2.70 16 29 H 0.09 3.16 8.06 -2.39 -0.02 3.14 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.40 13.63 8.83 -92.71 -0.82 12.81 16 Total: -1.00 -68.50 277.90 3.51 -64.99 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.35 Total: 12.43 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 2.65 Total: -10.69 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -1.40 Total: -81.78 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.04 Total: -30.74 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -68.50 3.51 -64.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984418.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.472 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds