Wall clock time and date at job start Mon Mar 30 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38149 * 119.96142 * 2 1 4 4 C 1.38809 * 119.90805 * 179.97438 * 3 2 1 5 5 C 1.38904 * 119.90566 * 359.95064 * 4 3 2 6 6 C 1.38057 * 119.96171 * 0.07867 * 5 4 3 7 7 C 1.38355 * 119.96237 * 179.97438 * 2 1 3 8 8 Cl 1.73599 * 119.94015 * 0.05563 * 7 2 1 9 9 C 1.50659 * 119.84493 * 180.02562 * 5 4 3 10 10 C 1.52906 * 109.52638 * 326.07060 * 9 5 4 11 11 H 1.08996 * 109.39161 * 168.72388 * 10 9 5 12 12 C 1.50696 * 109.39598 * 288.54279 * 10 9 5 13 13 H 1.07996 * 120.00180 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99796 * 179.97438 * 12 10 9 15 15 N 1.31513 * 119.99957 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00172 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46919 * 59.99816 * 16 14 12 18 18 H 1.48498 * 109.47329 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46806 * 300.00371 * 16 14 12 20 20 C 1.50489 * 109.91238 * 48.59415 * 10 9 5 21 21 O 1.21288 * 119.61660 * 144.82412 * 20 10 9 22 22 N 1.34566 * 120.77225 * 324.79139 * 20 10 9 23 23 H 1.09003 * 109.47065 * 89.99321 * 1 2 3 24 24 H 1.08996 * 109.46727 * 209.99572 * 1 2 3 25 25 H 1.08995 * 109.46897 * 329.99327 * 1 2 3 26 26 H 1.08003 * 120.04585 * 0.02562 * 3 2 1 27 27 H 1.07996 * 119.98155 * 179.97438 * 6 5 4 28 28 H 1.08991 * 109.45824 * 206.05292 * 9 5 4 29 29 H 1.09003 * 109.46096 * 86.09057 * 9 5 4 30 30 H 0.97005 * 119.99823 * 179.97438 * 15 14 12 31 31 H 0.97005 * 119.77582 * 180.82069 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1969 0.0000 4 6 3.5851 1.1956 0.0005 5 6 4.2765 -0.0091 0.0021 6 6 3.5823 -1.2025 0.0015 7 6 2.1980 -1.1986 0.0005 8 17 1.3275 -2.7006 -0.0003 9 6 5.7831 -0.0090 0.0033 10 6 6.2946 1.1862 -0.8017 11 1 7.3657 1.3020 -0.6365 12 6 6.0370 0.9494 -2.2675 13 1 5.5563 0.0380 -2.5910 14 6 6.4141 1.8968 -3.1956 15 7 6.9990 3.0068 -2.8016 16 14 6.0942 1.6037 -5.0125 17 1 4.6355 1.4409 -5.2383 18 1 6.5905 2.7634 -5.7959 19 1 6.8027 0.3733 -5.4476 20 6 5.5835 2.4391 -0.3671 21 8 6.1835 3.4930 -0.3481 22 7 4.2894 2.4041 0.0003 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6571 2.1323 0.0004 27 1 4.1196 -2.1394 0.0023 28 1 6.1466 -0.9325 -0.4470 29 1 6.1454 0.0620 1.0289 30 1 7.2646 3.6732 -3.4546 31 1 3.8418 3.2225 0.2666 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:41 Heat of formation + Delta-G solvation = -50.855314 kcal Electronic energy + Delta-G solvation = -17818.895892 eV Core-core repulsion = 14896.341414 eV Total energy + Delta-G solvation = -2922.554477 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71989 -39.58842 -37.47117 -36.16281 -35.51944 -34.21600 -32.22351 -30.28102 -28.43348 -26.28562 -24.32154 -23.68595 -23.04642 -20.00483 -18.72045 -18.44525 -17.53021 -16.69006 -16.56091 -16.18841 -15.61609 -15.33861 -14.94024 -14.60318 -14.44135 -14.12390 -13.74403 -13.33398 -13.18810 -12.93788 -12.83778 -12.74819 -12.58714 -12.43102 -12.23914 -11.88120 -11.50006 -11.32590 -10.98412 -10.74089 -10.35766 -9.58784 -8.70816 -8.15379 -6.36876 0.23776 0.36447 1.28816 1.38081 1.39100 1.47300 2.03237 2.36775 2.39839 2.83481 3.12120 3.75388 3.85987 4.11642 4.17811 4.28925 4.48313 4.54596 4.72110 4.76490 4.86998 4.94475 5.09023 5.13800 5.30764 5.34557 5.38593 5.48468 5.63684 5.83884 6.03323 6.16074 6.41742 6.76245 7.31923 7.55912 8.84711 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.006858 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.167438 B = 4081.678633 C = 4499.000526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.155 4.155 4 C 0.174 3.826 5 C -0.109 4.109 6 C -0.075 4.075 7 C -0.073 4.073 8 Cl -0.066 7.066 9 C -0.063 4.063 10 C 0.027 3.973 11 H 0.034 0.966 12 C -0.529 4.529 13 H 0.072 0.928 14 C 0.009 3.991 15 N -0.889 5.889 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.525 3.475 21 O -0.555 6.555 22 N -0.670 5.670 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.259 0.741 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -9.127 6.394 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.176 4.176 4 C 0.077 3.923 5 C -0.112 4.112 6 C -0.094 4.094 7 C -0.101 4.101 8 Cl -0.037 7.037 9 C -0.100 4.100 10 C 0.006 3.994 11 H 0.052 0.948 12 C -0.567 4.567 13 H 0.090 0.910 14 C -0.193 4.193 15 N -0.525 5.525 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.215 1.215 19 H -0.185 1.185 20 C 0.317 3.683 21 O -0.430 6.430 22 N -0.313 5.313 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.169 0.831 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.776 -8.601 6.283 16.634 hybrid contribution 0.102 0.690 -1.034 1.247 sum -12.674 -7.911 5.249 15.835 Atomic orbital electron populations 1.20896 0.88135 1.04354 1.03567 1.19729 0.97851 0.90117 0.97757 1.20734 0.90687 0.99214 1.06956 1.17975 0.91815 0.85491 0.97061 1.19529 0.96073 0.91557 1.04046 1.20797 0.92045 0.97905 0.98646 1.20665 0.91972 0.87040 1.10422 1.98319 1.76397 1.31817 1.97173 1.20477 0.90495 0.99446 0.99545 1.18857 0.95366 0.88800 0.96379 0.94845 1.21083 1.41158 1.04929 0.89555 0.90956 1.26002 0.94694 0.94940 1.03712 1.70347 1.38804 1.08175 1.35133 0.85661 0.78766 0.77929 0.79755 1.19615 1.21510 1.18500 1.21908 0.81095 0.92873 0.72467 1.90591 1.66581 1.34192 1.51660 1.43721 1.11988 1.09320 1.66313 0.90079 0.90254 0.89546 0.83150 0.83266 0.88956 0.90610 0.93190 0.76065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.61 71.24 0.68 -1.36 16 2 C -0.05 -1.34 5.88 -19.86 -0.12 -1.46 16 3 C -0.15 -4.37 9.57 22.39 0.21 -4.16 16 4 C 0.17 6.14 6.49 38.15 0.25 6.39 16 5 C -0.11 -3.80 5.30 -19.76 -0.10 -3.90 16 6 C -0.07 -2.18 9.47 22.27 0.21 -1.97 16 7 C -0.07 -1.95 6.32 22.34 0.14 -1.81 16 8 Cl -0.07 -1.48 27.28 -2.72 -0.07 -1.55 16 9 C -0.06 -2.35 5.38 29.80 0.16 -2.19 16 10 C 0.03 1.35 2.46 -12.38 -0.03 1.32 16 11 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 12 C -0.53 -28.09 8.13 25.60 0.21 -27.88 16 13 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 14 C 0.01 0.51 5.30 84.66 0.45 0.96 16 15 N -0.89 -53.96 11.23 21.45 0.24 -53.72 16 16 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.53 26.54 6.31 87.62 0.55 27.09 16 21 O -0.55 -32.56 16.31 -3.05 -0.05 -32.61 16 22 N -0.67 -27.05 5.36 -304.04 -1.63 -28.68 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.08 1.32 6.89 -2.39 -0.02 1.31 16 25 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 26 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 27 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.09 3.18 8.01 -2.39 -0.02 3.16 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.40 14.27 8.83 -92.70 -0.82 13.45 16 Total: -1.00 -67.68 279.67 3.48 -64.21 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.35 Total: 15.68 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 2.62 Total: -8.97 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.39 Total: -82.40 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.55 kcal Total: -67.68 3.48 -64.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.350 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds