Wall clock time and date at job start Mon Mar 30 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.42181 * 305.00395 * 10 9 7 12 12 C 1.52892 * 109.42424 * 185.11998 * 10 9 7 13 13 C 1.50580 * 109.73777 * 288.24752 * 12 10 9 14 14 C 1.38162 * 119.97998 * 147.36623 * 13 12 10 15 15 C 1.38252 * 120.09649 * 178.06982 * 14 13 12 16 16 C 1.38312 * 120.12004 * 359.80233 * 15 14 13 17 17 C 1.38173 * 120.04434 * 0.52624 * 16 15 14 18 18 Cl 1.73603 * 120.02283 * 180.42550 * 17 16 15 19 19 C 1.38785 * 120.04649 * 326.49869 * 13 12 10 20 20 N 1.39798 * 120.10991 * 1.65487 * 19 13 12 21 21 C 1.34416 * 120.77373 * 14.18970 * 20 19 13 22 22 O 1.21285 * 119.68721 * 185.44028 * 21 20 19 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09000 * 109.43687 * 48.26789 * 12 10 9 27 27 H 1.09002 * 109.44072 * 168.14625 * 12 10 9 28 28 H 1.08004 * 119.95425 * 358.05016 * 14 13 12 29 29 H 1.07999 * 119.94021 * 179.83395 * 15 14 13 30 30 H 1.07999 * 119.97590 * 180.54367 * 16 15 14 31 31 H 0.97000 * 119.61905 * 194.16441 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9288 -3.5545 -0.8415 12 6 1.4838 -4.9818 -0.1281 13 6 0.7556 -5.2762 1.1566 14 6 -0.4527 -5.9455 1.1275 15 6 -1.1039 -6.2522 2.3078 16 6 -0.5461 -5.8938 3.5217 17 6 0.6588 -5.2183 3.5568 18 17 1.3639 -4.7785 5.0810 19 6 1.3061 -4.8916 2.3712 20 7 2.5204 -4.1997 2.4031 21 6 3.0289 -3.6509 1.2864 22 8 4.1291 -3.1414 1.3148 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 0.7637 -4.9072 -0.9430 27 1 2.1873 -5.7873 -0.3391 28 1 -0.8894 -6.2292 0.1813 29 1 -2.0496 -6.7731 2.2821 30 1 -1.0525 -6.1423 4.4426 31 1 3.0016 -4.1144 3.2410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:56 Heat of formation + Delta-G solvation = -35.332282 kcal Electronic energy + Delta-G solvation = -17763.748121 eV Core-core repulsion = 14841.866773 eV Total energy + Delta-G solvation = -2921.881348 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76289 -38.37815 -36.52255 -35.06979 -34.35939 -32.58656 -30.44342 -29.31450 -27.18768 -24.04159 -22.80135 -22.56141 -21.84317 -18.46762 -17.85861 -16.84435 -16.16515 -15.60276 -15.23914 -14.70217 -14.47174 -14.27814 -13.92792 -13.50405 -13.18652 -12.90583 -12.31200 -12.03849 -11.71710 -11.46559 -11.37040 -11.26854 -10.97633 -10.73829 -10.53943 -10.47931 -10.29348 -9.68397 -9.30488 -9.01644 -8.58109 -8.38732 -7.77778 -6.03440 -4.05517 1.21518 1.30938 2.15270 3.12292 3.32433 3.39893 3.40767 3.48249 3.83892 4.46766 4.65341 4.89731 4.99994 5.22913 5.26492 5.33952 5.42294 5.51240 5.67572 5.82755 6.06535 6.18618 6.26914 6.30423 6.51466 6.62322 6.80799 7.09213 7.42689 7.54096 7.59163 7.96022 8.31103 8.55133 9.02768 9.60022 11.07446 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.006702 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.014387 B = 4176.787608 C = 4389.676599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.103 4.103 11 H 0.104 0.896 12 C -0.076 4.076 13 C -0.101 4.101 14 C -0.077 4.077 15 C -0.140 4.140 16 C -0.084 4.084 17 C -0.081 4.081 18 Cl -0.072 7.072 19 C 0.193 3.807 20 N -0.666 5.666 21 C 0.545 3.455 22 O -0.521 6.521 23 H 0.260 0.740 24 H 0.022 0.978 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -14.750 4.904 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.000 4.000 10 C -0.124 4.124 11 H 0.122 0.878 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.095 4.095 15 C -0.159 4.159 16 C -0.103 4.103 17 C -0.110 4.110 18 Cl -0.043 7.043 19 C 0.094 3.906 20 N -0.310 5.310 21 C 0.335 3.665 22 O -0.395 6.395 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.006 -14.251 4.833 15.181 hybrid contribution 0.508 1.180 0.729 1.477 sum -1.498 -13.071 5.562 14.283 Atomic orbital electron populations 1.69967 1.06004 1.26612 1.50712 1.24972 0.94808 0.99298 0.95044 0.86539 0.80498 0.83599 0.77527 1.19487 1.20929 1.21051 1.21372 0.93694 0.90592 1.50775 0.91681 1.19119 0.92551 0.89907 0.98461 1.21638 0.99379 0.97414 0.93984 0.87832 1.20636 0.99066 0.97222 0.94432 1.19502 0.96984 1.00682 0.93205 1.20953 0.93332 0.96416 0.98826 1.20946 1.00678 1.02797 0.91501 1.20793 0.93005 0.97383 0.99142 1.20469 0.97533 1.07927 0.85116 1.98347 1.83861 1.92200 1.29875 1.17321 0.87063 0.93774 0.92421 1.43746 1.20848 1.53328 1.13076 1.20857 0.85600 0.74698 0.85371 1.90681 1.20578 1.42871 1.85363 0.93031 0.95948 0.94847 0.88957 0.90711 0.84895 0.85126 0.84894 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.53 -15.00 8.60 -34.44 -0.30 -15.30 16 8 H 0.06 1.91 7.13 -52.49 -0.37 1.54 16 9 C 0.04 0.91 4.23 -27.88 -0.12 0.80 16 10 C -0.10 -2.07 2.49 -91.88 -0.23 -2.30 16 11 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 12 C -0.08 -1.17 5.40 -28.00 -0.15 -1.32 16 13 C -0.10 -1.54 5.09 -104.51 -0.53 -2.07 16 14 C -0.08 -0.96 9.68 -39.60 -0.38 -1.34 16 15 C -0.14 -1.57 10.04 -39.55 -0.40 -1.97 16 16 C -0.08 -1.03 9.82 -39.58 -0.39 -1.42 16 17 C -0.08 -1.18 6.33 -39.33 -0.25 -1.43 16 18 Cl -0.07 -0.98 27.63 -51.86 -1.43 -2.42 16 19 C 0.19 3.20 6.34 -83.75 -0.53 2.67 16 20 N -0.67 -12.24 5.28 -10.00 -0.05 -12.29 16 21 C 0.54 11.58 6.38 -11.20 -0.07 11.51 16 22 O -0.52 -12.66 17.37 5.55 0.10 -12.57 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.60 7.59 -51.93 -0.39 0.20 16 25 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 26 H 0.09 1.27 7.97 -51.93 -0.41 0.86 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.40 6.94 7.53 -40.82 -0.31 6.64 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -32.41 281.37 -8.04 -40.45 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.16 Total: 1.62 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.44 Total: -10.52 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.68 Total: -38.16 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.10 Total: -12.57 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.43 Total: -2.42 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.41 -8.04 -40.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.115 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds