Wall clock time and date at job start Mon Mar 30 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.42181 * 305.00395 * 10 9 7 12 12 C 1.52892 * 109.42424 * 185.11998 * 10 9 7 13 13 C 1.50580 * 109.73777 * 288.24752 * 12 10 9 14 14 C 1.38162 * 119.97998 * 147.36623 * 13 12 10 15 15 C 1.38252 * 120.09649 * 178.06982 * 14 13 12 16 16 C 1.38312 * 120.12004 * 359.80233 * 15 14 13 17 17 C 1.38173 * 120.04434 * 0.52624 * 16 15 14 18 18 Cl 1.73603 * 120.02283 * 180.42550 * 17 16 15 19 19 C 1.38785 * 120.04649 * 326.49869 * 13 12 10 20 20 N 1.39798 * 120.10991 * 1.65487 * 19 13 12 21 21 C 1.34416 * 120.77373 * 14.18970 * 20 19 13 22 22 O 1.21285 * 119.68721 * 185.44028 * 21 20 19 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09000 * 109.43687 * 48.26789 * 12 10 9 27 27 H 1.09002 * 109.44072 * 168.14625 * 12 10 9 28 28 H 1.08004 * 119.95425 * 358.05016 * 14 13 12 29 29 H 1.07999 * 119.94021 * 179.83395 * 15 14 13 30 30 H 1.07999 * 119.97590 * 180.54367 * 16 15 14 31 31 H 0.97000 * 119.61905 * 194.16441 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9288 -3.5545 -0.8415 12 6 1.4838 -4.9818 -0.1281 13 6 0.7556 -5.2762 1.1566 14 6 -0.4527 -5.9455 1.1275 15 6 -1.1039 -6.2522 2.3078 16 6 -0.5461 -5.8938 3.5217 17 6 0.6588 -5.2183 3.5568 18 17 1.3639 -4.7785 5.0810 19 6 1.3061 -4.8916 2.3712 20 7 2.5204 -4.1997 2.4031 21 6 3.0289 -3.6509 1.2864 22 8 4.1291 -3.1414 1.3148 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 0.7637 -4.9072 -0.9430 27 1 2.1873 -5.7873 -0.3391 28 1 -0.8894 -6.2292 0.1813 29 1 -2.0496 -6.7731 2.2821 30 1 -1.0525 -6.1423 4.4426 31 1 3.0016 -4.1144 3.2410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:56 Heat of formation + Delta-G solvation = -55.643774 kcal Electronic energy + Delta-G solvation = -17764.628894 eV Core-core repulsion = 14841.866773 eV Total energy + Delta-G solvation = -2922.762121 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.11683 -39.73112 -37.64128 -36.53398 -35.92484 -34.46941 -31.87535 -30.47730 -28.90127 -25.68032 -24.33760 -23.71977 -23.37378 -19.80567 -19.12796 -18.71714 -17.85314 -16.99865 -16.66315 -16.33981 -15.92545 -15.63577 -15.15182 -14.99575 -14.57450 -14.26879 -13.83936 -13.50688 -13.48718 -13.11654 -12.70290 -12.63067 -12.44264 -12.35145 -12.18275 -11.90252 -11.73931 -11.50188 -11.23115 -10.88525 -10.57346 -9.62118 -9.00011 -8.24869 -6.33037 0.13675 0.23539 1.06730 1.32235 1.34227 1.47858 1.59319 2.05188 2.37106 2.73391 3.08880 3.43437 3.68026 3.83604 4.08656 4.14720 4.33676 4.38300 4.44974 4.74796 4.86477 4.95661 5.02435 5.06856 5.29662 5.38225 5.49074 5.53078 5.70212 5.74799 5.84761 6.09466 6.18818 6.79933 6.99231 7.35566 8.85786 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.006702 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.014387 B = 4176.787608 C = 4389.676599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.048 0.952 9 C 0.051 3.949 10 C -0.100 4.100 11 H 0.099 0.901 12 C -0.068 4.068 13 C -0.118 4.118 14 C -0.076 4.076 15 C -0.124 4.124 16 C -0.085 4.085 17 C -0.090 4.090 18 Cl -0.072 7.072 19 C 0.152 3.848 20 N -0.662 5.662 21 C 0.539 3.461 22 O -0.567 6.567 23 H 0.264 0.736 24 H -0.001 1.001 25 H 0.025 0.975 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -16.164 4.877 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.066 0.934 9 C 0.014 3.986 10 C -0.121 4.121 11 H 0.118 0.882 12 C -0.105 4.105 13 C -0.121 4.121 14 C -0.094 4.094 15 C -0.142 4.142 16 C -0.104 4.104 17 C -0.120 4.120 18 Cl -0.044 7.044 19 C 0.055 3.945 20 N -0.305 5.305 21 C 0.330 3.670 22 O -0.445 6.445 23 H 0.073 0.927 24 H 0.017 0.983 25 H 0.043 0.957 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.182 0.818 29 H 0.189 0.811 30 H 0.178 0.822 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.775 -15.701 4.822 16.853 hybrid contribution 0.937 1.535 0.798 1.967 sum -2.837 -14.166 5.619 15.502 Atomic orbital electron populations 1.70041 1.07034 1.27604 1.51345 1.25719 0.95711 1.02471 0.94790 0.85638 0.78822 0.79939 0.78166 1.20076 1.19307 1.20490 1.21671 0.93196 0.92703 1.50714 0.93403 1.18847 0.92721 0.90397 0.96648 1.21496 0.98627 0.98504 0.93475 0.88246 1.20610 0.99544 0.94929 0.95431 1.19725 0.98229 1.01681 0.92478 1.21366 0.91975 0.95179 1.00890 1.21473 1.01449 1.00901 0.90407 1.21229 0.91923 0.96229 1.00990 1.20735 0.98354 1.08253 0.84612 1.98344 1.84063 1.92294 1.29671 1.17659 0.87088 0.95759 0.94018 1.43573 1.21688 1.53063 1.12211 1.21051 0.85220 0.74321 0.86453 1.90641 1.22485 1.45194 1.86203 0.92660 0.98300 0.95690 0.87101 0.88169 0.81808 0.81086 0.82223 0.75574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.10 13.29 21.45 0.28 -54.82 16 2 C 0.01 0.70 5.46 84.66 0.46 1.16 16 3 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.54 -31.86 8.60 25.60 0.22 -31.64 16 8 H 0.05 2.91 7.13 -2.91 -0.02 2.89 16 9 C 0.05 2.60 4.23 29.85 0.13 2.72 16 10 C -0.10 -4.07 2.49 -11.61 -0.03 -4.10 16 11 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 12 C -0.07 -1.99 5.40 29.77 0.16 -1.83 16 13 C -0.12 -3.41 5.09 -19.79 -0.10 -3.51 16 14 C -0.08 -1.61 9.68 22.25 0.22 -1.39 16 15 C -0.12 -2.22 10.04 22.29 0.22 -2.00 16 16 C -0.08 -1.80 9.82 22.27 0.22 -1.58 16 17 C -0.09 -2.52 6.33 22.43 0.14 -2.38 16 18 Cl -0.07 -1.95 27.63 -2.72 -0.08 -2.02 16 19 C 0.15 4.94 6.34 38.18 0.24 5.18 16 20 N -0.66 -24.91 5.28 -304.15 -1.61 -26.51 16 21 C 0.54 23.67 6.38 87.68 0.56 24.23 16 22 O -0.57 -28.87 17.37 -3.05 -0.05 -28.92 16 23 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 24 H 0.00 -0.08 7.59 -2.39 -0.02 -0.09 16 25 H 0.02 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.11 2.79 7.97 -2.39 -0.02 2.77 16 27 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.41 14.49 7.53 -92.71 -0.70 13.79 16 Total: -1.00 -71.95 281.37 3.48 -68.47 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.47 Total: 10.51 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 2.44 Total: -15.13 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -1.32 Total: -81.33 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.02 kcal Total: -71.95 3.48 -68.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.821 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds