Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08990 * 109.41757 * 55.00004 * 10 9 7 12 12 C 1.52883 * 109.41244 * 174.86030 * 10 9 7 13 13 C 1.50715 * 109.67404 * 168.28198 * 12 10 9 14 14 C 1.38174 * 119.94014 * 146.61234 * 13 12 10 15 15 C 1.38257 * 120.07138 * 179.35310 * 14 13 12 16 16 C 1.38305 * 120.13085 * 359.96033 * 15 14 13 17 17 C 1.38171 * 120.06874 * 0.32847 * 16 15 14 18 18 Cl 1.73599 * 120.04575 * 179.97438 * 17 16 15 19 19 C 1.38704 * 120.06404 * 326.51252 * 13 12 10 20 20 N 1.39823 * 120.23004 * 1.97494 * 19 13 12 21 21 C 1.34361 * 120.69052 * 13.59105 * 20 19 13 22 22 O 1.21282 * 119.63394 * 185.90366 * 21 20 19 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.08997 * 109.43524 * 288.34560 * 12 10 9 27 27 H 1.09001 * 109.43967 * 48.26033 * 12 10 9 28 28 H 1.07994 * 119.96622 * 359.38614 * 14 13 12 29 29 H 1.08001 * 119.93435 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.96271 * 180.30933 * 16 15 14 31 31 H 0.96992 * 119.64566 * 193.68718 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9290 -3.5543 0.8415 12 6 1.4841 -4.9815 0.1286 13 6 2.4131 -6.1334 -0.1569 14 6 2.2488 -7.3332 0.5084 15 6 3.0911 -8.3959 0.2388 16 6 4.0999 -8.2620 -0.6978 17 6 4.2731 -7.0629 -1.3621 18 17 5.5399 -6.8952 -2.5371 19 6 3.4311 -5.9907 -1.0882 20 7 3.6264 -4.7669 -1.7357 21 6 3.0292 -3.6503 -1.2863 22 8 3.1242 -2.6220 -1.9222 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 1.0902 -5.0755 1.1406 27 1 0.6596 -4.9960 -0.5842 28 1 1.4613 -7.4412 1.2394 29 1 2.9610 -9.3326 0.7605 30 1 4.7532 -9.0954 -0.9098 31 1 4.1978 -4.7240 -2.5182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = -29.312067 kcal Electronic energy + Delta-G solvation = -17464.780853 eV Core-core repulsion = 14543.160561 eV Total energy + Delta-G solvation = -2921.620292 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77911 -38.47990 -36.65604 -34.94835 -34.52339 -32.50724 -30.58927 -29.38696 -27.09978 -24.02301 -23.03532 -22.68183 -21.33506 -18.64366 -17.83426 -16.85982 -16.31321 -15.87006 -15.41913 -14.67281 -14.43348 -14.27908 -13.82662 -13.63673 -13.42569 -12.55504 -12.30754 -12.25377 -11.61781 -11.52808 -11.38185 -11.11788 -11.01778 -10.79943 -10.51401 -10.44704 -10.39860 -9.55606 -9.20414 -8.94056 -8.74171 -8.25382 -7.90272 -5.90417 -3.87228 1.04696 1.15495 1.99922 3.08545 3.32977 3.39594 3.46791 3.53138 3.69354 4.52471 4.58638 4.77564 4.90774 5.11350 5.14055 5.32441 5.48153 5.50149 5.62965 5.73193 5.94822 6.09278 6.18137 6.34662 6.43719 6.52873 6.71181 7.06159 7.44768 7.58357 7.67290 8.06989 8.44193 8.62458 9.12788 9.73397 11.21854 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030959 B = 0.005363 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.213571 B = 5220.012283 C = 5935.351262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.490 4.490 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.098 4.098 11 H 0.097 0.903 12 C -0.076 4.076 13 C -0.110 4.110 14 C -0.077 4.077 15 C -0.142 4.142 16 C -0.084 4.084 17 C -0.084 4.084 18 Cl -0.071 7.071 19 C 0.190 3.810 20 N -0.676 5.676 21 C 0.516 3.484 22 O -0.471 6.471 23 H 0.258 0.742 24 H 0.023 0.977 25 H 0.030 0.970 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 -18.989 0.271 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.529 4.529 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.119 4.119 11 H 0.115 0.885 12 C -0.113 4.113 13 C -0.113 4.113 14 C -0.096 4.096 15 C -0.162 4.162 16 C -0.103 4.103 17 C -0.114 4.114 18 Cl -0.042 7.042 19 C 0.091 3.909 20 N -0.322 5.322 21 C 0.304 3.696 22 O -0.340 6.340 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.201 -18.097 -0.073 19.130 hybrid contribution 0.936 0.822 -0.583 1.376 sum 7.137 -17.275 -0.656 18.703 Atomic orbital electron populations 1.69956 1.05931 1.26293 1.52197 1.24919 0.94790 0.99095 0.95775 0.86526 0.80201 0.83938 0.77274 1.19879 1.21181 1.21281 1.21103 0.93001 0.90289 1.48488 0.92532 1.19089 0.92696 0.90019 0.98070 1.21509 0.99151 0.97320 0.93908 0.88542 1.20655 0.96770 0.90299 1.03546 1.19732 0.96554 0.97258 0.97775 1.21006 0.98766 0.91455 0.98386 1.20968 0.96313 0.99469 0.99404 1.20810 0.98548 0.95292 0.95682 1.20532 0.94892 0.96153 0.99859 1.98353 1.50715 1.97805 1.57342 1.17420 0.93851 0.85468 0.94206 1.44138 1.49882 1.06596 1.31545 1.21155 0.78722 0.81709 0.88043 1.90831 1.56786 1.29926 1.56447 0.93268 0.95916 0.95156 0.89151 0.89803 0.84806 0.85120 0.84906 0.75856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.79 29.54 -169.99 -5.02 17.77 16 4 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.49 -14.09 7.50 -34.44 -0.26 -14.35 16 8 H 0.06 1.65 7.15 -52.49 -0.38 1.27 16 9 C 0.04 0.97 4.20 -27.88 -0.12 0.85 16 10 C -0.10 -1.93 2.44 -91.89 -0.22 -2.16 16 11 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 12 C -0.08 -1.15 5.29 -27.94 -0.15 -1.30 16 13 C -0.11 -1.49 5.66 -104.47 -0.59 -2.08 16 14 C -0.08 -0.81 9.68 -39.60 -0.38 -1.20 16 15 C -0.14 -1.31 10.04 -39.55 -0.40 -1.71 16 16 C -0.08 -0.85 9.82 -39.58 -0.39 -1.24 16 17 C -0.08 -1.05 6.34 -39.31 -0.25 -1.30 16 18 Cl -0.07 -0.83 27.63 -51.86 -1.43 -2.27 16 19 C 0.19 2.76 6.54 -83.74 -0.55 2.21 16 20 N -0.68 -11.32 5.27 -10.01 -0.05 -11.37 16 21 C 0.52 10.68 7.39 -11.23 -0.08 10.60 16 22 O -0.47 -11.88 15.18 5.56 0.08 -11.79 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 27 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.40 6.32 7.54 -40.82 -0.31 6.02 16 LS Contribution 280.34 15.07 4.22 4.22 Total: -1.00 -32.67 280.34 -8.14 -40.81 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.19 Total: -0.45 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.48 Total: -10.18 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.68 Total: -38.11 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.43 Total: -2.27 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.67 -8.14 -40.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds