Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08990 * 109.41757 * 55.00004 * 10 9 7 12 12 C 1.52883 * 109.41244 * 174.86030 * 10 9 7 13 13 C 1.50715 * 109.67404 * 168.28198 * 12 10 9 14 14 C 1.38174 * 119.94014 * 146.61234 * 13 12 10 15 15 C 1.38257 * 120.07138 * 179.35310 * 14 13 12 16 16 C 1.38305 * 120.13085 * 359.96033 * 15 14 13 17 17 C 1.38171 * 120.06874 * 0.32847 * 16 15 14 18 18 Cl 1.73599 * 120.04575 * 179.97438 * 17 16 15 19 19 C 1.38704 * 120.06404 * 326.51252 * 13 12 10 20 20 N 1.39823 * 120.23004 * 1.97494 * 19 13 12 21 21 C 1.34361 * 120.69052 * 13.59105 * 20 19 13 22 22 O 1.21282 * 119.63394 * 185.90366 * 21 20 19 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.08997 * 109.43524 * 288.34560 * 12 10 9 27 27 H 1.09001 * 109.43967 * 48.26033 * 12 10 9 28 28 H 1.07994 * 119.96622 * 359.38614 * 14 13 12 29 29 H 1.08001 * 119.93435 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.96271 * 180.30933 * 16 15 14 31 31 H 0.96992 * 119.64566 * 193.68718 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9290 -3.5543 0.8415 12 6 1.4841 -4.9815 0.1286 13 6 2.4131 -6.1334 -0.1569 14 6 2.2488 -7.3332 0.5084 15 6 3.0911 -8.3959 0.2388 16 6 4.0999 -8.2620 -0.6978 17 6 4.2731 -7.0629 -1.3621 18 17 5.5399 -6.8952 -2.5371 19 6 3.4311 -5.9907 -1.0882 20 7 3.6264 -4.7669 -1.7357 21 6 3.0292 -3.6503 -1.2863 22 8 3.1242 -2.6220 -1.9222 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 1.0902 -5.0755 1.1406 27 1 0.6596 -4.9960 -0.5842 28 1 1.4613 -7.4412 1.2394 29 1 2.9610 -9.3326 0.7605 30 1 4.7532 -9.0954 -0.9098 31 1 4.1978 -4.7240 -2.5182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = -50.107675 kcal Electronic energy + Delta-G solvation = -17465.682618 eV Core-core repulsion = 14543.160561 eV Total energy + Delta-G solvation = -2922.522057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.05438 -39.77077 -37.61411 -36.28461 -36.12751 -34.38456 -31.97632 -30.44255 -28.78746 -25.65001 -24.55662 -23.67248 -22.82330 -19.97664 -19.03416 -18.57761 -18.07634 -17.06578 -16.63780 -16.46834 -15.78587 -15.57522 -15.06498 -14.85856 -14.72626 -14.08629 -13.93039 -13.51881 -13.16395 -12.93316 -12.83172 -12.50073 -12.48883 -12.32548 -12.18155 -11.96175 -11.74124 -11.45171 -11.12438 -10.82999 -10.46631 -9.65683 -9.01822 -8.15358 -6.17783 0.12096 0.20658 1.06878 1.35232 1.37885 1.50031 1.64469 2.02317 2.43754 2.70593 3.18551 3.46056 3.65647 3.83818 4.07338 4.14733 4.28109 4.35767 4.44963 4.76388 4.85000 4.92785 5.04009 5.08838 5.31419 5.42581 5.50060 5.58156 5.75071 5.79199 5.86676 6.11383 6.27400 6.88613 7.09155 7.45733 8.97145 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030959 B = 0.005363 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.213571 B = 5220.012283 C = 5935.351262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.501 4.501 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.093 4.093 11 H 0.101 0.899 12 C -0.066 4.066 13 C -0.122 4.122 14 C -0.071 4.071 15 C -0.121 4.121 16 C -0.080 4.080 17 C -0.088 4.088 18 Cl -0.071 7.071 19 C 0.152 3.848 20 N -0.667 5.667 21 C 0.516 3.484 22 O -0.535 6.535 23 H 0.261 0.739 24 H -0.011 1.011 25 H 0.024 0.976 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -21.851 1.611 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.008 3.992 10 C -0.114 4.114 11 H 0.119 0.881 12 C -0.103 4.103 13 C -0.125 4.125 14 C -0.089 4.089 15 C -0.140 4.140 16 C -0.099 4.099 17 C -0.118 4.118 18 Cl -0.042 7.042 19 C 0.055 3.945 20 N -0.312 5.312 21 C 0.305 3.695 22 O -0.409 6.409 23 H 0.070 0.930 24 H 0.008 0.992 25 H 0.042 0.958 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.181 0.819 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.922 -21.040 1.289 22.187 hybrid contribution 0.747 1.502 -0.983 1.944 sum 7.669 -19.538 0.306 20.992 Atomic orbital electron populations 1.70055 1.07165 1.27223 1.53288 1.25735 0.95727 1.02583 0.95748 0.85576 0.78785 0.79992 0.77738 1.19875 1.21092 1.19534 1.21423 0.92707 0.92128 1.47699 0.93688 1.18877 0.93134 0.91210 0.95960 1.21302 0.98357 0.97937 0.93779 0.88083 1.20530 0.96363 0.88506 1.04903 1.19692 0.96296 0.97894 0.98615 1.21360 0.99437 0.90225 0.97893 1.21475 0.94314 1.00364 0.97867 1.21250 0.98933 0.94872 0.94849 1.20732 0.94567 0.96398 1.00058 1.98357 1.50607 1.97852 1.57434 1.17691 0.95956 0.84986 0.95877 1.43798 1.49099 1.06734 1.31603 1.21237 0.78443 0.81865 0.87947 1.90788 1.59465 1.32349 1.58285 0.93041 0.99218 0.95777 0.86617 0.90638 0.81852 0.81028 0.82130 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.95 47.79 29.54 68.60 2.03 49.82 16 4 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.50 -29.89 7.50 25.60 0.19 -29.69 16 8 H 0.04 2.73 7.15 -2.91 -0.02 2.71 16 9 C 0.05 2.39 4.20 29.85 0.13 2.52 16 10 C -0.09 -3.76 2.44 -11.61 -0.03 -3.79 16 11 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 12 C -0.07 -1.96 5.29 29.81 0.16 -1.80 16 13 C -0.12 -3.04 5.66 -19.76 -0.11 -3.15 16 14 C -0.07 -1.17 9.68 22.26 0.22 -0.95 16 15 C -0.12 -1.55 10.04 22.29 0.22 -1.33 16 16 C -0.08 -1.26 9.82 22.27 0.22 -1.04 16 17 C -0.09 -1.99 6.34 22.45 0.14 -1.84 16 18 Cl -0.07 -1.58 27.63 -2.72 -0.08 -1.65 16 19 C 0.15 4.23 6.54 38.17 0.25 4.48 16 20 N -0.67 -22.80 5.27 -304.22 -1.60 -24.40 16 21 C 0.52 22.31 7.39 87.69 0.65 22.95 16 22 O -0.53 -28.59 15.18 -3.04 -0.05 -28.64 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.12 2.79 8.06 -2.39 -0.02 2.77 16 27 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 28 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.41 13.16 7.54 -92.71 -0.70 12.46 16 Total: -1.00 -74.54 280.34 3.54 -70.99 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 0.46 Total: 5.29 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 2.49 Total: -13.29 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.32 Total: -82.51 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.65 kcal Total: -74.54 3.54 -70.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.886 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds