Wall clock time and date at job start Mon Mar 30 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48500 * 109.47214 * 269.99970 * 3 2 1 5 5 H 1.48496 * 109.47023 * 29.99789 * 3 2 1 6 6 H 1.48498 * 109.47318 * 149.99896 * 3 2 1 7 7 C 1.37879 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46846 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.41795 * 305.13727 * 10 9 7 12 12 C 1.52892 * 109.35744 * 185.32060 * 10 9 7 13 13 C 1.50726 * 109.65367 * 288.12424 * 12 10 9 14 14 C 1.38161 * 119.93797 * 147.27448 * 13 12 10 15 15 C 1.38238 * 120.06850 * 178.59989 * 14 13 12 16 16 C 1.38416 * 120.10606 * 0.23150 * 15 14 13 17 17 Cl 1.73598 * 119.97403 * 180.02562 * 16 15 14 18 18 C 1.38198 * 120.06122 * 359.76095 * 16 15 14 19 19 C 1.38756 * 120.04617 * 326.40198 * 13 12 10 20 20 N 1.39760 * 120.23069 * 2.11513 * 19 13 12 21 21 C 1.34414 * 120.72754 * 13.60197 * 20 19 13 22 22 O 1.21283 * 119.66821 * 185.83918 * 21 20 19 23 23 H 0.97001 * 120.00475 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46721 * 60.00341 * 9 7 2 25 25 H 1.08995 * 109.46880 * 300.00388 * 9 7 2 26 26 H 1.08994 * 109.44635 * 168.07203 * 12 10 9 27 27 H 1.08998 * 109.44441 * 48.17538 * 12 10 9 28 28 H 1.08006 * 119.96034 * 358.58341 * 14 13 12 29 29 H 1.08002 * 119.94343 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.04714 * 180.26013 * 18 16 15 31 31 H 0.96997 * 119.63796 * 193.62114 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9306 -3.5529 -0.8412 12 6 1.4831 -4.9806 -0.1343 13 6 0.7538 -5.2771 1.1510 14 6 -0.4563 -5.9431 1.1193 15 6 -1.1135 -6.2421 2.2981 16 6 -0.5636 -5.8710 3.5129 17 17 -1.3914 -6.2488 4.9913 18 6 0.6467 -5.2048 3.5504 19 6 1.3055 -4.8979 2.3663 20 7 2.5166 -4.2012 2.4025 21 6 3.0268 -3.6524 1.2866 22 8 4.1279 -3.1448 1.3166 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.1860 -5.7861 -0.3466 27 1 0.7640 -4.9029 -0.9497 28 1 -0.8893 -6.2302 0.1724 29 1 -2.0595 -6.7624 2.2710 30 1 1.0776 -4.9191 4.4986 31 1 2.9943 -4.1130 3.2420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:00 Heat of formation + Delta-G solvation = -35.929526 kcal Electronic energy + Delta-G solvation = -17566.589161 eV Core-core repulsion = 14644.681915 eV Total energy + Delta-G solvation = -2921.907247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76599 -38.42395 -36.58394 -34.88530 -34.47660 -32.62085 -30.42821 -29.44867 -27.09503 -23.99862 -22.77896 -22.74880 -21.81638 -18.52312 -17.80461 -16.85175 -16.16990 -15.43550 -15.25352 -14.94861 -14.47764 -14.27755 -13.68753 -13.55403 -13.29928 -12.99893 -12.35388 -12.08291 -11.85993 -11.46638 -11.35503 -11.33055 -10.92885 -10.79498 -10.55269 -10.38284 -10.25807 -9.68882 -9.31898 -9.04546 -8.63731 -8.39945 -7.79638 -6.04589 -4.07050 1.19311 1.31212 2.10206 3.08523 3.32467 3.38511 3.41481 3.45799 3.83650 4.45299 4.75426 4.83202 5.01747 5.12441 5.28452 5.32657 5.47035 5.54391 5.67215 5.78318 6.07578 6.13360 6.24220 6.28481 6.47098 6.60370 6.76732 7.09495 7.42461 7.52907 7.58369 7.94512 8.29592 8.53616 9.01028 9.58562 11.06215 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.005722 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.539704 B = 4892.108343 C = 5216.725918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.036 3.964 10 C -0.103 4.103 11 H 0.103 0.897 12 C -0.078 4.078 13 C -0.105 4.105 14 C -0.070 4.070 15 C -0.141 4.141 16 C -0.006 4.006 17 Cl -0.076 7.076 18 C -0.155 4.155 19 C 0.194 3.806 20 N -0.667 5.667 21 C 0.545 3.455 22 O -0.523 6.523 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.022 0.978 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -14.655 4.870 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.082 0.918 9 C -0.001 4.001 10 C -0.124 4.124 11 H 0.121 0.879 12 C -0.115 4.115 13 C -0.108 4.108 14 C -0.089 4.089 15 C -0.161 4.161 16 C -0.033 4.033 17 Cl -0.047 7.047 18 C -0.177 4.177 19 C 0.096 3.904 20 N -0.310 5.310 21 C 0.335 3.665 22 O -0.397 6.397 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.105 -14.231 4.799 15.166 hybrid contribution 0.387 1.098 0.708 1.362 sum -1.719 -13.134 5.507 14.345 Atomic orbital electron populations 1.69956 1.06018 1.26759 1.50580 1.24973 0.94795 0.99292 0.95027 0.86590 0.80047 0.83250 0.78228 1.20510 1.21256 1.19717 1.21327 0.93627 0.90600 1.50969 0.91760 1.19122 0.92561 0.89901 0.98489 1.21622 0.99382 0.97425 0.93971 0.87903 1.20668 0.99040 0.97166 0.94597 1.19650 0.96786 1.00500 0.93886 1.20792 0.93354 0.96678 0.98049 1.20878 1.01222 1.03507 0.90463 1.20488 0.94059 1.01560 0.87238 1.98355 1.78256 1.93172 1.34959 1.20508 0.95381 1.04240 0.97574 1.17400 0.86660 0.93116 0.93237 1.43649 1.21354 1.53268 1.12737 1.20840 0.85545 0.74672 0.85445 1.90685 1.20518 1.43075 1.85378 0.92947 0.94863 0.95920 0.90765 0.89052 0.84527 0.85008 0.84758 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.53 -14.85 8.60 -34.44 -0.30 -15.14 16 8 H 0.06 1.86 7.14 -52.49 -0.37 1.49 16 9 C 0.04 0.89 4.22 -27.88 -0.12 0.78 16 10 C -0.10 -2.03 2.48 -91.89 -0.23 -2.25 16 11 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 12 C -0.08 -1.16 5.41 -27.93 -0.15 -1.32 16 13 C -0.11 -1.58 5.09 -104.45 -0.53 -2.11 16 14 C -0.07 -0.88 9.68 -39.61 -0.38 -1.26 16 15 C -0.14 -1.71 9.83 -39.52 -0.39 -2.10 16 16 C -0.01 -0.08 6.32 -39.53 -0.25 -0.33 16 17 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 16 18 C -0.16 -2.14 9.68 -39.34 -0.38 -2.52 16 19 C 0.19 3.03 6.35 -83.79 -0.53 2.50 16 20 N -0.67 -11.31 5.35 -10.03 -0.05 -11.37 16 21 C 0.54 11.15 6.39 -11.21 -0.07 11.07 16 22 O -0.52 -12.32 17.39 5.55 0.10 -12.23 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.84 8.09 -51.92 -0.42 0.42 16 25 H 0.02 0.60 7.60 -51.93 -0.39 0.20 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.09 1.25 7.97 -51.93 -0.41 0.84 16 28 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.40 5.93 8.80 -40.82 -0.36 5.57 16 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -32.02 283.70 -8.11 -40.13 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.21 Total: 1.22 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.43 Total: -11.05 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.68 Total: -37.09 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.10 Total: -12.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.02 -8.11 -40.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.199 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds