Wall clock time and date at job start Mon Mar 30 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48500 * 109.47214 * 269.99970 * 3 2 1 5 5 H 1.48496 * 109.47023 * 29.99789 * 3 2 1 6 6 H 1.48498 * 109.47318 * 149.99896 * 3 2 1 7 7 C 1.37879 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46846 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.41795 * 305.13727 * 10 9 7 12 12 C 1.52892 * 109.35744 * 185.32060 * 10 9 7 13 13 C 1.50726 * 109.65367 * 288.12424 * 12 10 9 14 14 C 1.38161 * 119.93797 * 147.27448 * 13 12 10 15 15 C 1.38238 * 120.06850 * 178.59989 * 14 13 12 16 16 C 1.38416 * 120.10606 * 0.23150 * 15 14 13 17 17 Cl 1.73598 * 119.97403 * 180.02562 * 16 15 14 18 18 C 1.38198 * 120.06122 * 359.76095 * 16 15 14 19 19 C 1.38756 * 120.04617 * 326.40198 * 13 12 10 20 20 N 1.39760 * 120.23069 * 2.11513 * 19 13 12 21 21 C 1.34414 * 120.72754 * 13.60197 * 20 19 13 22 22 O 1.21283 * 119.66821 * 185.83918 * 21 20 19 23 23 H 0.97001 * 120.00475 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46721 * 60.00341 * 9 7 2 25 25 H 1.08995 * 109.46880 * 300.00388 * 9 7 2 26 26 H 1.08994 * 109.44635 * 168.07203 * 12 10 9 27 27 H 1.08998 * 109.44441 * 48.17538 * 12 10 9 28 28 H 1.08006 * 119.96034 * 358.58341 * 14 13 12 29 29 H 1.08002 * 119.94343 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.04714 * 180.26013 * 18 16 15 31 31 H 0.96997 * 119.63796 * 193.62114 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9306 -3.5529 -0.8412 12 6 1.4831 -4.9806 -0.1343 13 6 0.7538 -5.2771 1.1510 14 6 -0.4563 -5.9431 1.1193 15 6 -1.1135 -6.2421 2.2981 16 6 -0.5636 -5.8710 3.5129 17 17 -1.3914 -6.2488 4.9913 18 6 0.6467 -5.2048 3.5504 19 6 1.3055 -4.8979 2.3663 20 7 2.5166 -4.2012 2.4025 21 6 3.0268 -3.6524 1.2866 22 8 4.1279 -3.1448 1.3166 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.1860 -5.7861 -0.3466 27 1 0.7640 -4.9029 -0.9497 28 1 -0.8893 -6.2302 0.1724 29 1 -2.0595 -6.7624 2.2710 30 1 1.0776 -4.9191 4.4986 31 1 2.9943 -4.1130 3.2420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:59 Heat of formation + Delta-G solvation = -55.640075 kcal Electronic energy + Delta-G solvation = -17567.443875 eV Core-core repulsion = 14644.681915 eV Total energy + Delta-G solvation = -2922.761960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.09375 -39.74082 -37.64580 -36.38598 -35.88794 -34.50602 -31.84363 -30.64611 -28.78836 -25.60914 -24.30719 -23.87778 -23.33902 -19.83794 -19.04249 -18.69627 -17.84606 -16.93576 -16.49605 -16.37194 -16.11606 -15.64759 -15.00340 -14.92482 -14.54762 -14.36677 -13.81667 -13.57099 -13.51995 -13.12618 -12.78528 -12.64321 -12.51201 -12.39528 -12.06222 -11.89445 -11.53474 -11.46017 -11.20457 -10.86040 -10.55633 -9.68885 -8.99096 -8.23625 -6.32074 0.10376 0.23562 1.09840 1.34940 1.35853 1.47702 1.60007 2.11166 2.38121 2.70709 3.10327 3.50968 3.71335 3.78274 4.02752 4.19985 4.27644 4.39096 4.41143 4.72916 4.82527 4.97353 5.01542 5.03009 5.25669 5.36494 5.41441 5.53693 5.65997 5.78781 5.82471 6.13271 6.20716 6.81348 7.04790 7.36725 8.86838 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.005722 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.539704 B = 4892.108343 C = 5216.725918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.049 0.951 9 C 0.049 3.951 10 C -0.100 4.100 11 H 0.098 0.902 12 C -0.069 4.069 13 C -0.121 4.121 14 C -0.067 4.067 15 C -0.132 4.132 16 C -0.016 4.016 17 Cl -0.064 7.064 18 C -0.156 4.156 19 C 0.162 3.838 20 N -0.659 5.659 21 C 0.540 3.460 22 O -0.567 6.567 23 H 0.264 0.736 24 H 0.023 0.977 25 H 0.000 1.000 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.168 0.832 29 H 0.160 0.840 30 H 0.146 0.854 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 -15.804 4.907 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.067 0.933 9 C 0.012 3.988 10 C -0.122 4.122 11 H 0.116 0.884 12 C -0.106 4.106 13 C -0.124 4.124 14 C -0.086 4.086 15 C -0.151 4.151 16 C -0.043 4.043 17 Cl -0.035 7.035 18 C -0.177 4.177 19 C 0.066 3.934 20 N -0.302 5.302 21 C 0.330 3.670 22 O -0.445 6.445 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.019 0.981 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.185 0.815 29 H 0.177 0.823 30 H 0.163 0.837 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.231 -15.415 4.855 16.482 hybrid contribution 0.628 1.376 0.769 1.697 sum -2.603 -14.039 5.624 15.346 Atomic orbital electron populations 1.70039 1.07117 1.27675 1.51376 1.25723 0.95660 1.02499 0.94799 0.85680 0.78471 0.79604 0.78755 1.19178 1.20355 1.20373 1.21637 0.93200 0.92623 1.50715 0.93291 1.18866 0.92789 0.90491 0.96673 1.21476 0.98624 0.98321 0.93755 0.88354 1.20637 0.99495 0.95039 0.95449 1.19861 0.97813 1.01306 0.93424 1.21142 0.92182 0.95572 0.99664 1.21267 1.01827 1.02203 0.89827 1.20668 0.93928 1.01439 0.88273 1.98362 1.77836 1.93016 1.34294 1.20662 0.95648 1.03859 0.97524 1.17641 0.86663 0.94639 0.94469 1.43440 1.21922 1.52712 1.12129 1.20952 0.85135 0.74375 0.86496 1.90650 1.22346 1.45307 1.86184 0.92684 0.95909 0.98140 0.88112 0.87402 0.81470 0.82259 0.83660 0.74966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 13.29 21.45 0.28 -54.59 16 2 C 0.01 0.69 5.46 84.66 0.46 1.15 16 3 Si 0.95 45.77 29.54 68.60 2.03 47.79 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.54 -31.24 8.60 25.60 0.22 -31.02 16 8 H 0.05 2.92 7.14 -2.91 -0.02 2.90 16 9 C 0.05 2.45 4.22 29.85 0.13 2.58 16 10 C -0.10 -3.98 2.48 -11.62 -0.03 -4.01 16 11 H 0.10 3.92 8.14 -2.38 -0.02 3.90 16 12 C -0.07 -1.97 5.41 29.82 0.16 -1.81 16 13 C -0.12 -3.41 5.09 -19.75 -0.10 -3.51 16 14 C -0.07 -1.48 9.68 22.25 0.22 -1.27 16 15 C -0.13 -2.77 9.83 22.31 0.22 -2.55 16 16 C -0.02 -0.38 6.32 22.30 0.14 -0.24 16 17 Cl -0.06 -1.35 28.95 -2.72 -0.08 -1.43 16 18 C -0.16 -4.09 9.68 22.43 0.22 -3.87 16 19 C 0.16 4.93 6.35 38.17 0.24 5.17 16 20 N -0.66 -22.48 5.35 -304.25 -1.63 -24.11 16 21 C 0.54 22.50 6.39 87.68 0.56 23.06 16 22 O -0.57 -27.61 17.39 -3.04 -0.05 -27.66 16 23 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.02 1.16 8.09 -2.38 -0.02 1.14 16 25 H 0.00 0.01 7.60 -2.39 -0.02 -0.01 16 26 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.11 2.69 7.97 -2.39 -0.02 2.67 16 28 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.41 12.30 8.80 -92.71 -0.82 11.48 16 Total: -1.00 -69.51 283.70 3.33 -66.18 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.35 Total: 10.15 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 2.44 Total: -16.31 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.34 Total: -78.71 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -69.51 3.33 -66.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.536 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds