Wall clock time and date at job start Mon Mar 30 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00256 * 2 1 4 4 H 1.48496 * 109.46866 * 269.99966 * 3 2 1 5 5 H 1.48495 * 109.46746 * 29.99899 * 3 2 1 6 6 H 1.48495 * 109.47305 * 149.99689 * 3 2 1 7 7 C 1.37880 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00404 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99337 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47024 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.41218 * 55.00347 * 10 9 7 12 12 C 1.52884 * 109.41231 * 174.86286 * 10 9 7 13 13 C 1.50728 * 109.66486 * 168.21123 * 12 10 9 14 14 C 1.38157 * 119.93356 * 146.61773 * 13 12 10 15 15 C 1.38237 * 120.07012 * 179.35744 * 14 13 12 16 16 C 1.38430 * 120.10442 * 359.94755 * 15 14 13 17 17 Cl 1.73597 * 119.96773 * 180.33438 * 16 15 14 18 18 C 1.38193 * 120.05552 * 0.31799 * 16 15 14 19 19 C 1.38750 * 120.05897 * 326.50499 * 13 12 10 20 20 N 1.39773 * 120.22570 * 1.98612 * 19 13 12 21 21 C 1.34406 * 120.72105 * 13.66683 * 20 19 13 22 22 O 1.21295 * 119.66995 * 185.86581 * 21 20 19 23 23 H 0.97007 * 120.00124 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46988 * 60.00659 * 9 7 2 25 25 H 1.08995 * 109.47963 * 300.00133 * 9 7 2 26 26 H 1.08998 * 109.43664 * 288.26598 * 12 10 9 27 27 H 1.08991 * 109.44158 * 48.15176 * 12 10 9 28 28 H 1.08004 * 119.96453 * 359.37230 * 14 13 12 29 29 H 1.08002 * 119.94433 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.03736 * 180.02562 * 18 16 15 31 31 H 0.96997 * 119.63784 * 193.66017 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0015 11 1 2.9294 -3.5539 0.8430 12 6 1.4838 -4.9814 0.1317 13 6 2.4124 -6.1334 -0.1558 14 6 2.2490 -7.3332 0.5095 15 6 3.0907 -8.3957 0.2383 16 6 4.0985 -8.2610 -0.7010 17 17 5.1479 -9.6004 -1.0451 18 6 4.2697 -7.0614 -1.3653 19 6 3.4289 -5.9904 -1.0893 20 7 3.6228 -4.7668 -1.7364 21 6 3.0279 -3.6493 -1.2849 22 8 3.1221 -2.6203 -1.9202 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 1.0919 -5.0756 1.1445 27 1 0.6577 -4.9953 -0.5791 28 1 1.4627 -7.4411 1.2420 29 1 2.9614 -9.3326 0.7599 30 1 5.0558 -6.9567 -2.0984 31 1 4.1931 -4.7236 -2.5199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984518.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:01 Heat of formation + Delta-G solvation = -29.917119 kcal Electronic energy + Delta-G solvation = -17270.650794 eV Core-core repulsion = 14349.004265 eV Total energy + Delta-G solvation = -2921.646529 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78065 -38.52821 -36.70823 -34.75202 -34.63993 -32.55837 -30.60305 -29.50368 -26.99557 -23.98270 -23.03310 -22.85221 -21.31053 -18.69988 -17.79174 -16.85609 -16.30725 -15.80168 -15.40423 -14.77503 -14.43898 -14.29042 -13.72500 -13.63775 -13.59068 -12.52772 -12.43548 -12.35337 -11.64538 -11.52868 -11.40023 -11.15212 -11.04111 -10.75741 -10.47478 -10.42688 -10.38254 -9.57211 -9.22397 -8.96212 -8.79322 -8.26296 -7.92337 -5.91430 -3.88443 1.02723 1.15319 1.94862 3.04108 3.33850 3.40439 3.45881 3.49506 3.69154 4.54695 4.62897 4.75383 4.90901 5.01662 5.15676 5.36780 5.47292 5.52058 5.59491 5.70822 5.96011 6.06365 6.11464 6.31918 6.41323 6.50174 6.69353 7.06229 7.44350 7.57357 7.65953 8.05564 8.42852 8.60648 9.11211 9.72132 11.20780 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046260 B = 0.004326 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.123238 B = 6471.502925 C = 6865.762335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.492 4.492 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.098 4.098 11 H 0.096 0.904 12 C -0.077 4.077 13 C -0.115 4.115 14 C -0.071 4.071 15 C -0.143 4.143 16 C -0.007 4.007 17 Cl -0.075 7.075 18 C -0.159 4.159 19 C 0.192 3.808 20 N -0.677 5.677 21 C 0.516 3.484 22 O -0.472 6.472 23 H 0.258 0.742 24 H 0.022 0.978 25 H 0.030 0.970 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.282 -18.876 0.225 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.119 4.119 11 H 0.114 0.886 12 C -0.114 4.114 13 C -0.118 4.118 14 C -0.090 4.090 15 C -0.163 4.163 16 C -0.035 4.035 17 Cl -0.046 7.046 18 C -0.181 4.181 19 C 0.093 3.907 20 N -0.322 5.322 21 C 0.304 3.696 22 O -0.341 6.341 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.150 -18.126 -0.030 19.141 hybrid contribution 0.932 0.684 -0.514 1.266 sum 7.082 -17.441 -0.544 18.832 Atomic orbital electron populations 1.69944 1.05938 1.26411 1.52055 1.24916 0.94788 0.99083 0.95750 0.86583 0.79707 0.83589 0.78026 1.20811 1.21468 1.20068 1.21059 0.92947 0.90308 1.48704 0.92594 1.19082 0.92703 0.90010 0.98053 1.21504 0.99164 0.97310 0.93919 0.88573 1.20659 0.96851 0.90382 1.03509 1.19871 0.96947 0.97001 0.97972 1.20843 0.98480 0.91044 0.98602 1.20904 0.95915 1.00195 0.99295 1.20527 0.94777 0.88912 0.99239 1.98362 1.65962 1.45823 1.94502 1.20536 1.01580 0.91731 1.04208 1.17488 0.93873 0.85775 0.93550 1.44050 1.50106 1.06652 1.31367 1.21162 0.78695 0.81732 0.88035 1.90840 1.56787 1.29937 1.56556 0.93198 0.95955 0.95180 0.89271 0.89836 0.84445 0.84994 0.84759 0.76062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.49 -14.00 7.49 -34.44 -0.26 -14.26 16 8 H 0.06 1.61 7.15 -52.49 -0.38 1.23 16 9 C 0.04 0.96 4.20 -27.88 -0.12 0.85 16 10 C -0.10 -1.90 2.44 -91.89 -0.22 -2.12 16 11 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 12 C -0.08 -1.15 5.30 -27.93 -0.15 -1.30 16 13 C -0.11 -1.52 5.66 -104.45 -0.59 -2.11 16 14 C -0.07 -0.75 9.68 -39.61 -0.38 -1.14 16 15 C -0.14 -1.45 9.83 -39.51 -0.39 -1.83 16 16 C -0.01 -0.08 6.32 -39.53 -0.25 -0.33 16 17 Cl -0.08 -0.74 28.95 -51.86 -1.50 -2.25 16 18 C -0.16 -1.83 9.68 -39.34 -0.38 -2.22 16 19 C 0.19 2.60 6.54 -83.79 -0.55 2.05 16 20 N -0.68 -10.35 5.35 -10.03 -0.05 -10.41 16 21 C 0.52 10.26 7.39 -11.21 -0.08 10.18 16 22 O -0.47 -11.56 15.17 5.54 0.08 -11.48 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 27 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 28 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.40 5.30 8.80 -40.82 -0.36 4.94 16 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -32.32 282.61 -8.21 -40.53 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.25 Total: -0.93 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.47 Total: -10.74 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.68 Total: -36.99 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.32 -8.21 -40.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984518.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.613 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds