Wall clock time and date at job start Mon Mar 30 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00256 * 2 1 4 4 H 1.48496 * 109.46866 * 269.99966 * 3 2 1 5 5 H 1.48495 * 109.46746 * 29.99899 * 3 2 1 6 6 H 1.48495 * 109.47305 * 149.99689 * 3 2 1 7 7 C 1.37880 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00404 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99337 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47024 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.41218 * 55.00347 * 10 9 7 12 12 C 1.52884 * 109.41231 * 174.86286 * 10 9 7 13 13 C 1.50728 * 109.66486 * 168.21123 * 12 10 9 14 14 C 1.38157 * 119.93356 * 146.61773 * 13 12 10 15 15 C 1.38237 * 120.07012 * 179.35744 * 14 13 12 16 16 C 1.38430 * 120.10442 * 359.94755 * 15 14 13 17 17 Cl 1.73597 * 119.96773 * 180.33438 * 16 15 14 18 18 C 1.38193 * 120.05552 * 0.31799 * 16 15 14 19 19 C 1.38750 * 120.05897 * 326.50499 * 13 12 10 20 20 N 1.39773 * 120.22570 * 1.98612 * 19 13 12 21 21 C 1.34406 * 120.72105 * 13.66683 * 20 19 13 22 22 O 1.21295 * 119.66995 * 185.86581 * 21 20 19 23 23 H 0.97007 * 120.00124 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46988 * 60.00659 * 9 7 2 25 25 H 1.08995 * 109.47963 * 300.00133 * 9 7 2 26 26 H 1.08998 * 109.43664 * 288.26598 * 12 10 9 27 27 H 1.08991 * 109.44158 * 48.15176 * 12 10 9 28 28 H 1.08004 * 119.96453 * 359.37230 * 14 13 12 29 29 H 1.08002 * 119.94433 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.03736 * 180.02562 * 18 16 15 31 31 H 0.96997 * 119.63784 * 193.66017 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0015 11 1 2.9294 -3.5539 0.8430 12 6 1.4838 -4.9814 0.1317 13 6 2.4124 -6.1334 -0.1558 14 6 2.2490 -7.3332 0.5095 15 6 3.0907 -8.3957 0.2383 16 6 4.0985 -8.2610 -0.7010 17 17 5.1479 -9.6004 -1.0451 18 6 4.2697 -7.0614 -1.3653 19 6 3.4289 -5.9904 -1.0893 20 7 3.6228 -4.7668 -1.7364 21 6 3.0279 -3.6493 -1.2849 22 8 3.1221 -2.6203 -1.9202 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 1.0919 -5.0756 1.1445 27 1 0.6577 -4.9953 -0.5791 28 1 1.4627 -7.4411 1.2420 29 1 2.9614 -9.3326 0.7599 30 1 5.0558 -6.9567 -2.0984 31 1 4.1931 -4.7236 -2.5199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984518.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:01 Heat of formation + Delta-G solvation = -50.157773 kcal Electronic energy + Delta-G solvation = -17271.528495 eV Core-core repulsion = 14349.004265 eV Total energy + Delta-G solvation = -2922.524230 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02662 -39.77829 -37.61409 -36.23993 -35.97458 -34.42867 -31.97602 -30.59376 -28.66915 -25.57269 -24.52371 -23.85187 -22.77731 -19.99756 -18.95990 -18.54528 -18.06539 -17.01769 -16.51596 -16.45855 -15.89315 -15.61999 -15.06365 -14.78347 -14.60299 -14.19424 -13.93071 -13.55074 -13.17652 -12.94340 -12.91026 -12.56405 -12.51559 -12.30888 -12.20625 -11.88690 -11.45445 -11.45140 -11.13107 -10.79618 -10.45589 -9.71258 -9.01003 -8.14216 -6.16754 0.07380 0.22488 1.10113 1.36839 1.40188 1.49163 1.64300 2.09477 2.44623 2.67728 3.19918 3.54349 3.71758 3.76162 4.01414 4.19096 4.26420 4.32455 4.40684 4.75288 4.86107 4.88937 5.01789 5.08241 5.25638 5.39223 5.44260 5.59683 5.66063 5.83963 5.89140 6.16057 6.28451 6.89827 7.14733 7.46764 8.98094 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046260 B = 0.004326 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.123238 B = 6471.502925 C = 6865.762335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.952 3.048 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.047 0.953 9 C 0.045 3.955 10 C -0.094 4.094 11 H 0.101 0.899 12 C -0.067 4.067 13 C -0.125 4.125 14 C -0.063 4.063 15 C -0.130 4.130 16 C -0.014 4.014 17 Cl -0.063 7.063 18 C -0.151 4.151 19 C 0.164 3.836 20 N -0.663 5.663 21 C 0.517 3.483 22 O -0.534 6.534 23 H 0.261 0.739 24 H -0.011 1.011 25 H 0.022 0.978 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -21.228 1.170 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.008 3.992 10 C -0.115 4.115 11 H 0.119 0.881 12 C -0.104 4.104 13 C -0.128 4.128 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.041 4.041 17 Cl -0.034 7.034 18 C -0.173 4.173 19 C 0.067 3.933 20 N -0.308 5.308 21 C 0.306 3.694 22 O -0.408 6.408 23 H 0.069 0.931 24 H 0.008 0.992 25 H 0.040 0.960 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.185 0.815 29 H 0.178 0.822 30 H 0.166 0.834 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.102 -20.559 0.930 21.771 hybrid contribution 0.684 1.209 -0.802 1.604 sum 7.785 -19.350 0.129 20.858 Atomic orbital electron populations 1.70049 1.07217 1.27270 1.53245 1.25739 0.95712 1.02603 0.95766 0.85635 0.78930 0.79755 0.77829 1.21165 1.20204 1.19086 1.21409 0.92779 0.92080 1.47746 0.93490 1.18872 0.93177 0.91289 0.95872 1.21295 0.98395 0.97711 0.94117 0.88109 1.20526 0.96465 0.88654 1.04788 1.19824 0.96808 0.97389 0.98804 1.21121 0.98954 0.89790 0.98231 1.21269 0.94543 1.00959 0.98186 1.20695 0.95187 0.88986 0.99221 1.98375 1.65624 1.45004 1.94443 1.20651 1.01221 0.91302 1.04111 1.17662 0.95477 0.85380 0.94760 1.43657 1.49266 1.06352 1.31535 1.21153 0.78448 0.82002 0.87822 1.90803 1.59382 1.32342 1.58318 0.93067 0.99236 0.96011 0.86958 0.90605 0.81550 0.82221 0.83396 0.74920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.95 47.21 29.54 68.60 2.03 49.24 16 4 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.50 -29.49 7.49 25.60 0.19 -29.29 16 8 H 0.05 2.78 7.15 -2.91 -0.02 2.76 16 9 C 0.05 2.34 4.20 29.85 0.13 2.47 16 10 C -0.09 -3.70 2.44 -11.61 -0.03 -3.73 16 11 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 12 C -0.07 -1.95 5.30 29.82 0.16 -1.79 16 13 C -0.13 -3.03 5.66 -19.75 -0.11 -3.14 16 14 C -0.06 -1.09 9.68 22.25 0.22 -0.87 16 15 C -0.13 -2.06 9.83 22.32 0.22 -1.84 16 16 C -0.01 -0.25 6.32 22.30 0.14 -0.11 16 17 Cl -0.06 -1.05 28.95 -2.72 -0.08 -1.13 16 18 C -0.15 -3.12 9.68 22.42 0.22 -2.90 16 19 C 0.16 4.17 6.54 38.16 0.25 4.42 16 20 N -0.66 -20.17 5.35 -304.25 -1.63 -21.80 16 21 C 0.52 21.12 7.39 87.68 0.65 21.77 16 22 O -0.53 -27.37 15.17 -3.08 -0.05 -27.41 16 23 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 2.69 8.06 -2.39 -0.02 2.67 16 27 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 28 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.41 10.83 8.80 -92.71 -0.82 10.01 16 Total: -1.00 -72.14 282.61 3.39 -68.75 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.35 Total: 4.82 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 2.49 Total: -14.68 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.34 Total: -79.59 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -72.14 3.39 -68.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984518.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.593 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds