Wall clock time and date at job start Mon Mar 30 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.41815 * 54.85994 * 10 9 7 12 12 C 1.52882 * 109.41084 * 174.65688 * 10 9 7 13 13 C 1.50745 * 109.68040 * 168.31061 * 12 10 9 14 14 C 1.38147 * 119.93227 * 147.34447 * 13 12 10 15 15 C 1.38362 * 120.04792 * 179.10705 * 14 13 12 16 16 Cl 1.73597 * 119.95461 * 180.02562 * 15 14 13 17 17 C 1.38404 * 120.08909 * 0.02639 * 15 14 13 18 18 C 1.38068 * 120.07147 * 0.26613 * 17 15 14 19 19 C 1.38745 * 120.07283 * 326.98177 * 13 12 10 20 20 N 1.39809 * 120.23092 * 1.22155 * 19 13 12 21 21 C 1.34433 * 120.67263 * 14.18686 * 20 19 13 22 22 O 1.21282 * 119.70197 * 185.86428 * 21 20 19 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.08992 * 109.43748 * 288.35767 * 12 10 9 27 27 H 1.08995 * 109.43404 * 48.22766 * 12 10 9 28 28 H 1.07999 * 119.97729 * 359.13338 * 14 13 12 29 29 H 1.08004 * 119.96449 * 180.25675 * 17 15 14 30 30 H 1.08003 * 120.02679 * 179.97438 * 18 17 15 31 31 H 0.97000 * 119.66834 * 194.16344 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9306 -3.5530 0.8401 12 6 1.4844 -4.9812 0.1337 13 6 2.4129 -6.1341 -0.1510 14 6 2.2405 -7.3367 0.5067 15 6 3.0798 -8.4023 0.2336 16 17 2.8605 -9.9125 1.0610 17 6 4.0939 -8.2657 -0.6983 18 6 4.2739 -7.0639 -1.3537 19 6 3.4352 -5.9910 -1.0781 20 7 3.6253 -4.7707 -1.7334 21 6 3.0269 -3.6524 -1.2878 22 8 3.1168 -2.6266 -1.9285 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 1.0931 -5.0727 1.1469 27 1 0.6577 -4.9969 -0.5765 28 1 1.4497 -7.4453 1.2342 29 1 4.7453 -9.1000 -0.9129 30 1 5.0657 -6.9580 -2.0805 31 1 4.1951 -4.7304 -2.5174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011984521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:27 Heat of formation + Delta-G solvation = -30.298206 kcal Electronic energy + Delta-G solvation = -17273.252009 eV Core-core repulsion = 14351.588955 eV Total energy + Delta-G solvation = -2921.663054 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78093 -38.52686 -36.61733 -34.73528 -34.61250 -32.61861 -30.76156 -29.22858 -27.10943 -24.04323 -23.06968 -22.70717 -21.35724 -18.67276 -17.74487 -16.88967 -16.35348 -15.97105 -15.41080 -14.61096 -14.46488 -14.24138 -13.71333 -13.64747 -13.38629 -12.69822 -12.38806 -12.32033 -11.66927 -11.58899 -11.53637 -11.13934 -10.93984 -10.77539 -10.46719 -10.41379 -10.19533 -9.57340 -9.23784 -8.96646 -8.93789 -8.26736 -7.84603 -5.91617 -3.88670 1.04342 1.14473 2.08004 3.02845 3.31810 3.38462 3.45607 3.51500 3.68942 4.53032 4.59779 4.65773 4.95071 5.04520 5.16050 5.32284 5.46937 5.49198 5.64101 5.78518 5.96835 6.06559 6.07509 6.22647 6.41435 6.48581 6.68773 7.06504 7.43817 7.57425 7.66066 8.05485 8.42666 8.60297 9.11274 9.72000 11.20633 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.041096 B = 0.004415 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.170421 B = 6339.969336 C = 6795.151355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.491 4.491 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.097 4.097 11 H 0.096 0.904 12 C -0.076 4.076 13 C -0.108 4.108 14 C -0.073 4.073 15 C -0.067 4.067 16 Cl -0.080 7.080 17 C -0.082 4.082 18 C -0.154 4.154 19 C 0.185 3.815 20 N -0.677 5.677 21 C 0.515 3.485 22 O -0.473 6.473 23 H 0.258 0.742 24 H 0.022 0.978 25 H 0.030 0.970 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -18.812 0.044 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.119 4.119 11 H 0.114 0.886 12 C -0.113 4.113 13 C -0.111 4.111 14 C -0.092 4.092 15 C -0.095 4.095 16 Cl -0.051 7.051 17 C -0.102 4.102 18 C -0.176 4.176 19 C 0.086 3.914 20 N -0.322 5.322 21 C 0.303 3.697 22 O -0.341 6.341 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.222 -18.080 -0.115 19.121 hybrid contribution 0.776 0.668 -0.362 1.086 sum 6.999 -17.411 -0.477 18.771 Atomic orbital electron populations 1.69956 1.05937 1.26311 1.52119 1.24922 0.94789 0.99100 0.95762 0.86527 0.80173 0.83944 0.77290 1.19885 1.21181 1.21272 1.21095 0.92973 0.90293 1.48585 0.92550 1.19088 0.92712 0.90013 0.98077 1.21501 0.99184 0.97238 0.93934 0.88573 1.20655 0.96824 0.90252 1.03588 1.19683 0.97035 0.96223 0.98203 1.20758 0.98635 0.90471 0.99345 1.20710 1.00589 0.88099 1.00118 1.98351 1.96909 1.31818 1.78034 1.20735 0.96818 0.97584 0.95038 1.20684 1.00805 0.92317 1.03750 1.17774 0.94081 0.86158 0.93373 1.44081 1.50027 1.06957 1.31140 1.21170 0.78696 0.81738 0.88090 1.90834 1.56846 1.30183 1.56276 0.93250 0.95922 0.95172 0.89260 0.89772 0.84437 0.84870 0.84834 0.76047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 4 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.49 -13.98 7.50 -34.44 -0.26 -14.24 16 8 H 0.06 1.62 7.17 -52.49 -0.38 1.25 16 9 C 0.04 0.96 4.20 -27.88 -0.12 0.84 16 10 C -0.10 -1.89 2.43 -91.88 -0.22 -2.12 16 11 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 12 C -0.08 -1.16 5.29 -27.92 -0.15 -1.30 16 13 C -0.11 -1.45 5.67 -104.45 -0.59 -2.05 16 14 C -0.07 -0.85 9.46 -39.57 -0.37 -1.22 16 15 C -0.07 -0.74 6.32 -39.47 -0.25 -0.99 16 16 Cl -0.08 -0.80 28.95 -51.86 -1.50 -2.30 16 17 C -0.08 -0.82 9.82 -39.58 -0.39 -1.21 16 18 C -0.15 -1.62 9.90 -39.38 -0.39 -2.01 16 19 C 0.18 2.44 6.53 -83.77 -0.55 1.89 16 20 N -0.68 -10.14 5.36 -10.01 -0.05 -10.20 16 21 C 0.52 10.19 7.39 -11.19 -0.08 10.11 16 22 O -0.47 -11.51 15.20 5.56 0.08 -11.42 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 27 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 28 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.40 5.11 8.81 -40.82 -0.36 4.75 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -32.37 282.67 -8.21 -40.58 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -3.25 Total: -1.08 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.47 Total: -10.81 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.68 Total: -36.79 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.37 -8.21 -40.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.278 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds