Wall clock time and date at job start Mon Mar 30 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.41815 * 54.85994 * 10 9 7 12 12 C 1.52882 * 109.41084 * 174.65688 * 10 9 7 13 13 C 1.50745 * 109.68040 * 168.31061 * 12 10 9 14 14 C 1.38147 * 119.93227 * 147.34447 * 13 12 10 15 15 C 1.38362 * 120.04792 * 179.10705 * 14 13 12 16 16 Cl 1.73597 * 119.95461 * 180.02562 * 15 14 13 17 17 C 1.38404 * 120.08909 * 0.02639 * 15 14 13 18 18 C 1.38068 * 120.07147 * 0.26613 * 17 15 14 19 19 C 1.38745 * 120.07283 * 326.98177 * 13 12 10 20 20 N 1.39809 * 120.23092 * 1.22155 * 19 13 12 21 21 C 1.34433 * 120.67263 * 14.18686 * 20 19 13 22 22 O 1.21282 * 119.70197 * 185.86428 * 21 20 19 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.08992 * 109.43748 * 288.35767 * 12 10 9 27 27 H 1.08995 * 109.43404 * 48.22766 * 12 10 9 28 28 H 1.07999 * 119.97729 * 359.13338 * 14 13 12 29 29 H 1.08004 * 119.96449 * 180.25675 * 17 15 14 30 30 H 1.08003 * 120.02679 * 179.97438 * 18 17 15 31 31 H 0.97000 * 119.66834 * 194.16344 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9306 -3.5530 0.8401 12 6 1.4844 -4.9812 0.1337 13 6 2.4129 -6.1341 -0.1510 14 6 2.2405 -7.3367 0.5067 15 6 3.0798 -8.4023 0.2336 16 17 2.8605 -9.9125 1.0610 17 6 4.0939 -8.2657 -0.6983 18 6 4.2739 -7.0639 -1.3537 19 6 3.4352 -5.9910 -1.0781 20 7 3.6253 -4.7707 -1.7334 21 6 3.0269 -3.6524 -1.2878 22 8 3.1168 -2.6266 -1.9285 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 1.0931 -5.0727 1.1469 27 1 0.6577 -4.9969 -0.5765 28 1 1.4497 -7.4453 1.2342 29 1 4.7453 -9.1000 -0.9129 30 1 5.0657 -6.9580 -2.0805 31 1 4.1951 -4.7304 -2.5174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:27 Heat of formation + Delta-G solvation = -50.584231 kcal Electronic energy + Delta-G solvation = -17274.131677 eV Core-core repulsion = 14351.588955 eV Total energy + Delta-G solvation = -2922.542722 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02296 -39.77597 -37.54165 -36.28711 -35.86492 -34.47363 -32.16120 -30.30185 -28.79192 -25.65568 -24.53224 -23.72104 -22.84232 -19.99300 -18.91221 -18.54098 -18.05228 -17.19561 -16.61202 -16.46602 -15.74929 -15.59819 -14.95351 -14.78554 -14.58599 -14.04556 -13.98438 -13.56343 -13.22126 -13.00633 -12.96062 -12.61380 -12.51348 -12.38167 -12.24681 -11.80540 -11.45413 -11.27634 -11.12792 -10.79829 -10.45621 -9.87793 -8.91264 -8.14636 -6.17450 0.05239 0.26274 1.22763 1.36628 1.38913 1.51069 1.62780 2.08291 2.44475 2.67554 3.19481 3.51931 3.65934 3.74597 4.02152 4.17915 4.25276 4.31096 4.39581 4.82137 4.83574 4.94852 5.00958 5.08158 5.16333 5.27765 5.43201 5.58472 5.64366 5.83100 5.92440 6.15683 6.27634 6.89459 7.16077 7.46325 8.97947 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.041096 B = 0.004415 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.170421 B = 6339.969336 C = 6795.151355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.501 4.501 8 H 0.048 0.952 9 C 0.045 3.955 10 C -0.093 4.093 11 H 0.100 0.900 12 C -0.067 4.067 13 C -0.119 4.119 14 C -0.074 4.074 15 C -0.067 4.067 16 Cl -0.069 7.069 17 C -0.076 4.076 18 C -0.137 4.137 19 C 0.157 3.843 20 N -0.661 5.661 21 C 0.516 3.484 22 O -0.534 6.534 23 H 0.260 0.740 24 H -0.010 1.010 25 H 0.019 0.981 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -21.051 0.361 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.008 3.992 10 C -0.115 4.115 11 H 0.118 0.882 12 C -0.104 4.104 13 C -0.122 4.122 14 C -0.093 4.093 15 C -0.094 4.094 16 Cl -0.040 7.040 17 C -0.095 4.095 18 C -0.158 4.158 19 C 0.060 3.940 20 N -0.306 5.306 21 C 0.305 3.695 22 O -0.408 6.408 23 H 0.069 0.931 24 H 0.008 0.992 25 H 0.038 0.962 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.180 0.820 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.814 -20.399 0.218 21.845 hybrid contribution 0.308 1.154 -0.435 1.271 sum 8.122 -19.245 -0.217 20.890 Atomic orbital electron populations 1.70064 1.07264 1.27225 1.53303 1.25760 0.95714 1.02684 0.95740 0.85555 0.78882 0.79875 0.77659 1.19600 1.21069 1.19773 1.21427 0.92795 0.92000 1.47680 0.93409 1.18872 0.93193 0.91374 0.95810 1.21273 0.98415 0.97418 0.94361 0.88169 1.20499 0.96546 0.88831 1.04535 1.19525 0.97204 0.96189 0.99279 1.20848 0.99192 0.89939 0.99286 1.20885 1.00338 0.88253 0.99944 1.98365 1.96868 1.30941 1.77826 1.21097 0.96469 0.98075 0.93838 1.20973 1.00261 0.91205 1.03370 1.18012 0.95568 0.86038 0.94350 1.43658 1.49146 1.06461 1.31364 1.21094 0.78490 0.82130 0.87769 1.90798 1.59396 1.32590 1.57968 0.93075 0.99186 0.96233 0.87530 0.90583 0.83107 0.81948 0.81963 0.74601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.95 47.21 29.54 68.60 2.03 49.24 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.50 -29.47 7.50 25.60 0.19 -29.28 16 8 H 0.05 2.84 7.17 -2.91 -0.02 2.81 16 9 C 0.04 2.34 4.20 29.85 0.13 2.47 16 10 C -0.09 -3.72 2.43 -11.61 -0.03 -3.75 16 11 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 12 C -0.07 -2.02 5.29 29.82 0.16 -1.86 16 13 C -0.12 -2.99 5.67 -19.75 -0.11 -3.11 16 14 C -0.07 -1.52 9.46 22.28 0.21 -1.31 16 15 C -0.07 -1.22 6.32 22.34 0.14 -1.08 16 16 Cl -0.07 -1.16 28.95 -2.72 -0.08 -1.24 16 17 C -0.08 -1.18 9.82 22.27 0.22 -0.96 16 18 C -0.14 -2.37 9.90 22.40 0.22 -2.14 16 19 C 0.16 3.82 6.53 38.16 0.25 4.07 16 20 N -0.66 -19.29 5.36 -304.18 -1.63 -20.92 16 21 C 0.52 20.89 7.39 87.68 0.65 21.53 16 22 O -0.53 -27.04 15.20 -3.03 -0.05 -27.09 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 2.79 8.06 -2.39 -0.02 2.77 16 27 H 0.08 2.39 8.09 -2.39 -0.02 2.38 16 28 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.41 10.08 8.81 -92.71 -0.82 9.26 16 Total: -1.00 -72.23 282.67 3.39 -68.84 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.35 Total: 4.30 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 2.49 Total: -15.12 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.34 Total: -78.93 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -72.23 3.39 -68.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.257 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds