Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48505 * 109.47116 * 270.00341 * 3 2 1 5 5 H 1.48503 * 109.47016 * 29.99634 * 3 2 1 6 6 H 1.48496 * 109.47525 * 149.99955 * 3 2 1 7 7 C 1.37876 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00438 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99954 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47119 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.37098 * 305.14640 * 10 9 7 12 12 C 1.53283 * 109.62148 * 185.18110 * 10 9 7 13 13 C 1.50700 * 109.54605 * 288.55646 * 12 10 9 14 14 C 1.38129 * 119.95624 * 147.15208 * 13 12 10 15 15 C 1.38366 * 120.06431 * 178.05895 * 14 13 12 16 16 Cl 1.73601 * 119.95592 * 179.77987 * 15 14 13 17 17 C 1.38409 * 120.08248 * 359.79923 * 15 14 13 18 18 C 1.38074 * 120.04661 * 0.56685 * 17 15 14 19 19 C 1.38826 * 120.06924 * 326.30759 * 13 12 10 20 20 N 1.39807 * 120.09557 * 1.67359 * 19 13 12 21 21 C 1.34414 * 120.77352 * 14.22165 * 20 19 13 22 22 O 1.21293 * 119.67834 * 185.41177 * 21 20 19 23 23 H 0.96998 * 119.99925 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47619 * 59.99594 * 9 7 2 25 25 H 1.08997 * 109.47239 * 299.99587 * 9 7 2 26 26 H 1.08997 * 109.64706 * 168.44192 * 12 10 9 27 27 H 1.08997 * 109.31394 * 48.46476 * 12 10 9 28 28 H 1.07999 * 119.96779 * 358.07891 * 14 13 12 29 29 H 1.07997 * 119.97357 * 180.54394 * 17 15 14 30 30 H 1.08000 * 119.99956 * 180.39059 * 18 17 15 31 31 H 0.96998 * 119.61349 * 194.19690 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 1 3.5836 -3.1749 0.8404 12 6 5.5487 -2.6426 0.1309 13 6 6.1668 -2.1520 -1.1530 14 6 7.3494 -1.4390 -1.1208 15 6 7.9398 -1.0222 -2.3007 16 17 9.4232 -0.1214 -2.2567 17 6 7.3491 -1.3222 -3.5159 18 6 6.1630 -2.0281 -3.5524 19 6 5.5581 -2.4310 -2.3691 20 7 4.3521 -3.1374 -2.4037 21 6 3.6230 -3.3085 -1.2875 22 8 2.6318 -4.0068 -1.3188 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6808 0.8904 25 1 3.8752 -0.6797 -0.8895 26 1 5.8949 -3.6555 0.3363 27 1 5.8429 -1.9856 0.9493 28 1 7.8139 -1.2070 -0.1738 29 1 7.8160 -1.0036 -4.4361 30 1 5.7059 -2.2673 -4.5013 31 1 4.0377 -3.5081 -3.2431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011984526.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -53.707448 kcal Electronic energy + Delta-G solvation = -17637.601661 eV Core-core repulsion = 14714.923506 eV Total energy + Delta-G solvation = -2922.678155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11611 -39.76178 -37.57526 -36.46415 -35.77870 -34.55190 -32.27510 -30.40141 -29.26198 -25.60716 -24.18522 -23.74629 -23.23318 -19.91997 -19.01115 -18.95832 -17.95791 -17.05284 -16.63458 -16.22799 -16.02959 -15.66482 -14.97007 -14.88886 -14.68166 -14.19849 -14.16035 -13.72605 -13.59271 -13.24896 -12.87719 -12.64314 -12.50761 -12.21587 -11.87859 -11.75573 -11.62060 -11.44430 -11.28280 -10.86565 -10.75841 -9.85867 -8.91665 -8.29234 -6.35283 0.05378 0.27283 1.22382 1.34181 1.35879 1.47470 1.57234 2.07835 2.33931 2.68655 3.05256 3.46403 3.66736 3.69610 3.98127 4.17265 4.22973 4.32921 4.38481 4.70703 4.85993 4.89816 4.98944 5.00732 5.11902 5.19018 5.27180 5.31718 5.58174 5.66149 5.84334 6.12888 6.27433 6.75123 7.05621 7.28601 8.88146 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.006902 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.419418 B = 4055.871428 C = 4876.161492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.232 1.232 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.009 3.991 10 C -0.093 4.093 11 H 0.096 0.904 12 C -0.069 4.069 13 C -0.116 4.116 14 C -0.074 4.074 15 C -0.067 4.067 16 Cl -0.068 7.068 17 C -0.079 4.079 18 C -0.143 4.143 19 C 0.155 3.845 20 N -0.658 5.658 21 C 0.535 3.465 22 O -0.569 6.569 23 H 0.265 0.735 24 H 0.049 0.951 25 H 0.019 0.981 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.190 -1.161 -5.644 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.155 1.155 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.029 4.029 10 C -0.114 4.114 11 H 0.114 0.886 12 C -0.106 4.106 13 C -0.119 4.119 14 C -0.093 4.093 15 C -0.095 4.095 16 Cl -0.040 7.040 17 C -0.098 4.098 18 C -0.164 4.164 19 C 0.058 3.942 20 N -0.302 5.302 21 C 0.325 3.675 22 O -0.446 6.446 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 21.623 -1.333 -5.442 22.338 hybrid contribution -0.797 0.483 -0.472 1.045 sum 20.826 -0.850 -5.914 21.666 Atomic orbital electron populations 1.70102 1.08580 1.28089 1.52473 1.26046 0.95576 1.03563 0.94041 0.85708 0.80081 0.78074 0.79148 1.19677 1.20988 1.15518 1.21483 0.92047 0.93187 1.50559 0.95337 1.19444 0.93947 0.91482 0.98002 1.21387 0.97584 0.98560 0.93892 0.88576 1.20710 0.90512 1.03820 0.95546 1.19580 0.96218 1.02282 0.93856 1.20885 0.93661 0.96144 0.98605 1.20902 0.91292 1.02021 0.95275 1.98361 1.33120 1.73571 1.98902 1.21066 0.94311 0.96776 0.97601 1.20940 0.96955 1.01457 0.97005 1.18025 0.86002 0.94840 0.95315 1.43491 1.21017 1.53667 1.11977 1.21011 0.81269 0.78492 0.86737 1.90692 1.27557 1.40161 1.86205 0.92568 0.93260 0.96257 0.88067 0.86891 0.82524 0.82169 0.82486 0.74795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.23 -9.49 6.54 99.48 0.65 -8.84 16 7 C -0.53 -31.34 9.16 25.60 0.23 -31.10 16 8 H 0.03 1.93 7.39 -2.91 -0.02 1.91 16 9 C 0.01 0.40 3.30 29.85 0.10 0.49 16 10 C -0.09 -3.51 2.49 -11.48 -0.03 -3.54 16 11 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 12 C -0.07 -1.78 5.44 29.94 0.16 -1.62 16 13 C -0.12 -2.94 5.09 -19.75 -0.10 -3.04 16 14 C -0.07 -1.55 9.46 22.27 0.21 -1.34 16 15 C -0.07 -1.34 6.32 22.34 0.14 -1.20 16 16 Cl -0.07 -1.23 28.95 -2.72 -0.08 -1.31 16 17 C -0.08 -1.43 9.82 22.27 0.22 -1.22 16 18 C -0.14 -2.94 9.90 22.38 0.22 -2.72 16 19 C 0.15 4.12 6.32 38.16 0.24 4.36 16 20 N -0.66 -20.91 5.36 -304.20 -1.63 -22.54 16 21 C 0.53 21.91 6.38 87.68 0.56 22.47 16 22 O -0.57 -28.67 17.38 -3.07 -0.05 -28.72 16 23 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 24 H 0.05 2.06 7.16 -2.39 -0.02 2.04 16 25 H 0.02 0.85 7.01 -2.39 -0.02 0.84 16 26 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.11 2.42 7.99 -2.39 -0.02 2.40 16 28 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.41 11.42 8.80 -92.71 -0.82 10.60 16 Total: -1.00 -75.55 280.12 3.14 -72.41 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.29 Total: 13.33 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 2.42 Total: -17.73 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.33 Total: -83.65 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -75.55 3.14 -72.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011984526.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -75.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds