Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39768 * 120.08888 * 285.01961 * 3 2 1 5 5 C 1.37725 * 119.90832 * 180.02562 * 4 3 2 6 6 C 1.39012 * 120.09039 * 0.02562 * 5 4 3 7 7 O 1.35709 * 119.91114 * 179.97438 * 6 5 4 8 8 C 1.35634 * 118.00026 * 183.61623 * 7 6 5 9 9 C 1.39353 * 119.82303 * 257.33451 * 8 7 6 10 10 C 1.36408 * 120.18342 * 180.27885 * 9 8 7 11 11 C 1.40846 * 119.81803 * 0.02562 * 10 9 8 12 12 C 1.41187 * 120.18099 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99963 * 205.06935 * 12 11 10 14 14 C 1.39889 * 119.99761 * 25.07428 * 12 11 10 15 15 N 1.30884 * 120.00080 * 18.11779 * 14 12 11 16 16 Si 1.86797 * 120.00168 * 198.12555 * 14 12 11 17 17 H 1.48500 * 109.47263 * 84.98184 * 16 14 12 18 18 H 1.48498 * 109.47230 * 204.98686 * 16 14 12 19 19 H 1.48504 * 109.46884 * 324.98464 * 16 14 12 20 20 C 1.40855 * 119.64337 * 359.97438 * 11 10 9 21 21 C 1.36407 * 119.81483 * 0.02562 * 20 11 10 22 22 C 1.39013 * 120.17907 * 0.26932 * 6 5 4 23 23 C 1.37722 * 120.09171 * 359.45196 * 22 6 5 24 24 H 1.07995 * 120.04626 * 0.04632 * 4 3 2 25 25 H 1.07996 * 119.95101 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.90769 * 0.25713 * 9 8 7 27 27 H 1.08005 * 120.09545 * 179.97438 * 10 9 8 28 28 H 0.97004 * 120.00153 * 180.02562 * 15 14 12 29 29 H 1.08002 * 120.08940 * 179.97438 * 20 11 10 30 30 H 1.08008 * 119.91046 * 179.97438 * 21 20 11 31 31 H 1.08003 * 119.95848 * 179.72770 * 22 6 5 32 32 H 1.08000 * 120.04590 * 180.24770 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.3124 1.1680 5 6 4.6461 -0.3102 1.1640 6 6 5.3391 0.0034 0.0004 7 8 6.6962 0.0051 0.0007 8 6 7.3327 0.3890 -1.1338 9 6 7.8935 -0.5719 -1.9730 10 6 8.5402 -0.1936 -3.1129 11 6 8.6409 1.1725 -3.4405 12 6 9.3090 1.5727 -4.6181 13 1 9.7421 2.5597 -4.6844 14 6 9.4099 0.6905 -5.6991 15 7 8.6101 -0.3425 -5.7776 16 14 10.6863 0.9867 -7.0304 17 1 11.9838 0.3981 -6.6120 18 1 10.2390 0.3505 -8.2954 19 1 10.8508 2.4474 -7.2422 20 6 8.0714 2.1374 -2.5869 21 6 7.4280 1.7427 -1.4508 22 6 4.6458 0.3214 -1.1617 23 6 3.2686 0.3158 -1.1676 24 1 2.7312 -0.5561 2.0724 25 1 5.1883 -0.5516 2.0662 26 1 7.8160 -1.6189 -1.7200 27 1 8.9746 -0.9395 -3.7620 28 1 8.6803 -0.9544 -6.5270 29 1 8.1447 3.1870 -2.8309 30 1 6.9911 2.4813 -0.7949 31 1 5.1878 0.5688 -2.0626 32 1 2.7307 0.5590 -2.0720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019867892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = 36.768843 kcal Electronic energy + Delta-G solvation = -17953.004362 eV Core-core repulsion = 15036.682403 eV Total energy + Delta-G solvation = -2916.321959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21099 -38.29854 -36.90075 -35.93562 -33.70843 -31.08401 -30.47605 -29.78355 -29.25004 -25.48753 -23.36208 -22.70768 -21.35355 -20.81729 -18.74750 -17.96891 -17.58971 -16.17112 -15.58213 -14.87435 -14.50236 -14.43915 -14.09950 -13.85886 -13.57895 -13.36336 -12.99046 -12.78448 -12.58296 -12.33979 -12.08546 -11.93679 -11.53584 -11.39574 -11.25939 -11.05346 -10.81494 -10.46723 -10.07629 -9.61501 -9.36691 -8.99711 -8.00515 -7.86735 -7.52202 -7.05050 -4.63075 1.00862 1.44322 2.31442 2.74619 2.81367 2.92016 2.95819 2.96680 3.08773 3.72614 3.88981 4.01321 4.06517 4.43134 4.92313 5.02490 5.37588 5.40472 5.55899 5.72789 5.98257 6.04882 6.06355 6.20473 6.44970 6.52017 6.62067 6.74740 6.79492 6.94107 6.99876 7.30167 7.30728 7.57689 7.67283 7.75245 7.93763 8.20712 8.39850 8.58044 8.71993 9.87817 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.004057 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.455930 B = 6900.550969 C = 7337.076376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.270 3.730 3 C -0.096 4.096 4 C -0.034 4.034 5 C -0.168 4.168 6 C 0.166 3.834 7 O -0.238 6.238 8 C -0.091 4.091 9 C -0.086 4.086 10 C -0.161 4.161 11 C 0.116 3.884 12 C -0.447 4.447 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.778 5.778 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.219 4.219 21 C -0.084 4.084 22 C -0.195 4.195 23 C -0.030 4.030 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -0.485 5.578 6.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.044 4.044 3 C -0.100 4.100 4 C -0.055 4.055 5 C -0.187 4.187 6 C 0.120 3.880 7 O -0.147 6.147 8 C -0.134 4.134 9 C -0.105 4.105 10 C -0.180 4.180 11 C 0.113 3.887 12 C -0.475 4.475 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.402 5.402 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.239 4.239 21 C -0.102 4.102 22 C -0.214 4.214 23 C -0.050 4.050 24 H 0.150 0.850 25 H 0.154 0.846 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.165 0.835 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.195 -0.736 5.558 7.002 hybrid contribution 0.865 0.119 -0.880 1.239 sum -3.330 -0.617 4.678 5.775 Atomic orbital electron populations 1.81212 1.12210 1.10636 1.08045 1.25760 0.92645 0.92794 0.93231 1.15858 0.84059 1.13694 0.96357 1.20822 0.93118 0.95211 0.96319 1.20299 0.93011 1.07942 0.97469 1.20114 0.85094 0.89652 0.93180 1.84523 1.14087 1.79756 1.36380 1.18138 1.10047 0.92282 0.92885 1.20502 0.99415 0.96921 0.93682 1.20936 1.04352 0.96906 0.95838 1.17741 0.87855 0.91480 0.91617 1.19710 1.29619 1.00759 0.97370 0.89800 1.26019 0.95090 0.93925 0.99599 1.69825 1.29789 1.11197 1.29348 0.86226 0.80944 0.80104 0.79022 1.18902 1.20090 1.18417 1.20663 1.07031 0.98443 0.97764 1.20510 0.99613 0.93634 0.96484 1.21479 0.94177 1.06218 0.99501 1.20961 0.93621 0.94168 0.96267 0.84990 0.84565 0.88473 0.85869 0.90274 0.88164 0.88565 0.83512 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.87 18.54 41.84 0.78 -6.09 16 2 C 0.27 3.69 15.33 -22.47 -0.34 3.34 16 3 C -0.10 -1.22 5.74 -106.83 -0.61 -1.84 16 4 C -0.03 -0.39 9.75 -39.20 -0.38 -0.77 16 5 C -0.17 -2.18 9.97 -39.48 -0.39 -2.58 16 6 C 0.17 2.68 6.62 -39.01 -0.26 2.42 16 7 O -0.24 -4.47 9.95 -2.20 -0.02 -4.49 16 8 C -0.09 -1.88 4.32 -38.75 -0.17 -2.05 16 9 C -0.09 -1.86 9.92 -39.83 -0.40 -2.26 16 10 C -0.16 -3.78 8.64 -39.26 -0.34 -4.12 16 11 C 0.12 2.78 5.57 -106.80 -0.59 2.19 16 12 C -0.45 -10.67 9.03 -37.85 -0.34 -11.01 16 13 H 0.08 1.92 7.91 -52.49 -0.42 1.50 16 14 C 0.07 1.68 5.12 -17.34 -0.09 1.59 16 15 N -0.78 -18.18 11.01 55.54 0.61 -17.57 16 16 Si 0.91 16.92 29.60 -169.99 -5.03 11.88 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 C -0.22 -4.84 9.74 -39.25 -0.38 -5.22 16 21 C -0.08 -1.72 9.04 -39.83 -0.36 -2.08 16 22 C -0.20 -3.09 8.96 -39.48 -0.35 -3.45 16 23 C -0.03 -0.40 9.75 -39.20 -0.38 -0.78 16 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 27 H 0.12 2.98 6.21 -52.48 -0.33 2.65 16 28 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 29 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.15 2.63 6.43 -52.48 -0.34 2.29 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -24.91 295.11 -7.37 -32.27 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -2.75 Total: 6.16 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -5.40 Total: -26.62 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 1.39 Total: -23.66 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.02 Total: -4.49 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -24.91 -7.37 -32.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019867892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.040 kcal (2) G-P(sol) polarization free energy of solvation -24.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds