Wall clock time and date at job start Mon Mar 30 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39768 * 120.08888 * 285.01961 * 3 2 1 5 5 C 1.37725 * 119.90832 * 180.02562 * 4 3 2 6 6 C 1.39012 * 120.09039 * 0.02562 * 5 4 3 7 7 O 1.35709 * 119.91114 * 179.97438 * 6 5 4 8 8 C 1.35634 * 118.00026 * 183.61623 * 7 6 5 9 9 C 1.39353 * 119.82303 * 257.33451 * 8 7 6 10 10 C 1.36408 * 120.18342 * 180.27885 * 9 8 7 11 11 C 1.40846 * 119.81803 * 0.02562 * 10 9 8 12 12 C 1.41187 * 120.18099 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99963 * 205.06935 * 12 11 10 14 14 C 1.39889 * 119.99761 * 25.07428 * 12 11 10 15 15 N 1.30884 * 120.00080 * 18.11779 * 14 12 11 16 16 Si 1.86797 * 120.00168 * 198.12555 * 14 12 11 17 17 H 1.48500 * 109.47263 * 84.98184 * 16 14 12 18 18 H 1.48498 * 109.47230 * 204.98686 * 16 14 12 19 19 H 1.48504 * 109.46884 * 324.98464 * 16 14 12 20 20 C 1.40855 * 119.64337 * 359.97438 * 11 10 9 21 21 C 1.36407 * 119.81483 * 0.02562 * 20 11 10 22 22 C 1.39013 * 120.17907 * 0.26932 * 6 5 4 23 23 C 1.37722 * 120.09171 * 359.45196 * 22 6 5 24 24 H 1.07995 * 120.04626 * 0.04632 * 4 3 2 25 25 H 1.07996 * 119.95101 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.90769 * 0.25713 * 9 8 7 27 27 H 1.08005 * 120.09545 * 179.97438 * 10 9 8 28 28 H 0.97004 * 120.00153 * 180.02562 * 15 14 12 29 29 H 1.08002 * 120.08940 * 179.97438 * 20 11 10 30 30 H 1.08008 * 119.91046 * 179.97438 * 21 20 11 31 31 H 1.08003 * 119.95848 * 179.72770 * 22 6 5 32 32 H 1.08000 * 120.04590 * 180.24770 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.3124 1.1680 5 6 4.6461 -0.3102 1.1640 6 6 5.3391 0.0034 0.0004 7 8 6.6962 0.0051 0.0007 8 6 7.3327 0.3890 -1.1338 9 6 7.8935 -0.5719 -1.9730 10 6 8.5402 -0.1936 -3.1129 11 6 8.6409 1.1725 -3.4405 12 6 9.3090 1.5727 -4.6181 13 1 9.7421 2.5597 -4.6844 14 6 9.4099 0.6905 -5.6991 15 7 8.6101 -0.3425 -5.7776 16 14 10.6863 0.9867 -7.0304 17 1 11.9838 0.3981 -6.6120 18 1 10.2390 0.3505 -8.2954 19 1 10.8508 2.4474 -7.2422 20 6 8.0714 2.1374 -2.5869 21 6 7.4280 1.7427 -1.4508 22 6 4.6458 0.3214 -1.1617 23 6 3.2686 0.3158 -1.1676 24 1 2.7312 -0.5561 2.0724 25 1 5.1883 -0.5516 2.0662 26 1 7.8160 -1.6189 -1.7200 27 1 8.9746 -0.9395 -3.7620 28 1 8.6803 -0.9544 -6.5270 29 1 8.1447 3.1870 -2.8309 30 1 6.9911 2.4813 -0.7949 31 1 5.1878 0.5688 -2.0626 32 1 2.7307 0.5590 -2.0720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019867892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:33 Heat of formation + Delta-G solvation = 26.966186 kcal Electronic energy + Delta-G solvation = -17953.429438 eV Core-core repulsion = 15036.682403 eV Total energy + Delta-G solvation = -2916.747034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56699 -39.64706 -38.41422 -37.15093 -35.38578 -32.24090 -31.82668 -31.40399 -30.82472 -27.12639 -24.66603 -23.86110 -23.05918 -22.36819 -19.85551 -19.42436 -19.29758 -17.50213 -17.20733 -16.41329 -15.86676 -15.59129 -15.55565 -15.04352 -14.74045 -14.54295 -14.46030 -14.26075 -14.03247 -13.87481 -13.63825 -13.13677 -13.06283 -12.86648 -12.72002 -12.54141 -12.18938 -11.86757 -11.69598 -11.26968 -11.04534 -10.06248 -9.59792 -9.38150 -9.10192 -8.72490 -6.40608 -0.12282 0.37244 0.67089 1.06433 1.40677 1.47950 1.53317 1.64026 1.95406 2.18533 2.40176 2.80843 2.91491 2.95522 3.63661 3.87924 3.99029 4.21330 4.33596 4.37895 4.49980 4.62233 4.93383 4.99651 5.05358 5.10876 5.16467 5.26925 5.34473 5.42459 5.53470 5.57978 5.82217 5.95462 5.99975 6.20002 6.47606 6.51016 6.74411 6.83435 7.06406 8.22924 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.004057 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.455930 B = 6900.550969 C = 7337.076376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.290 3.710 3 C -0.087 4.087 4 C -0.016 4.016 5 C -0.157 4.157 6 C 0.142 3.858 7 O -0.250 6.250 8 C -0.072 4.072 9 C -0.094 4.094 10 C -0.178 4.178 11 C 0.088 3.912 12 C -0.483 4.483 13 H 0.084 0.916 14 C 0.038 3.962 15 N -0.811 5.811 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.257 1.257 20 C -0.228 4.228 21 C -0.084 4.084 22 C -0.209 4.209 23 C -0.027 4.027 24 H 0.171 0.829 25 H 0.161 0.839 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.293 0.707 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -0.548 7.018 7.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.024 4.024 3 C -0.091 4.091 4 C -0.036 4.036 5 C -0.175 4.175 6 C 0.096 3.904 7 O -0.161 6.161 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.197 4.197 11 C 0.086 3.914 12 C -0.511 4.511 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.435 5.435 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.181 1.181 20 C -0.248 4.248 21 C -0.103 4.103 22 C -0.228 4.228 23 C -0.047 4.047 24 H 0.188 0.812 25 H 0.178 0.822 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.187 -0.797 7.015 8.761 hybrid contribution 0.960 0.102 -1.119 1.478 sum -4.227 -0.695 5.896 7.288 Atomic orbital electron populations 1.81254 1.13092 1.11561 1.08984 1.25692 0.92440 0.91921 0.92333 1.15902 0.83574 1.13082 0.96561 1.21196 0.92481 0.92882 0.97025 1.20578 0.93510 1.06423 0.96993 1.20304 0.83573 0.91861 0.94643 1.84401 1.15844 1.80659 1.35170 1.18126 1.08893 0.92079 0.92330 1.20664 0.99258 0.97938 0.93436 1.20869 1.05569 0.96683 0.96625 1.18045 0.88803 0.92108 0.92487 1.19934 1.31350 1.01496 0.98304 0.89815 1.26790 0.96433 0.93393 1.01350 1.69869 1.31095 1.12142 1.30436 0.85187 0.78178 0.79994 0.76302 1.18621 1.19324 1.18061 1.20836 1.07054 0.98685 0.98196 1.20703 0.99024 0.94236 0.96292 1.21281 0.95047 1.07826 0.98659 1.21030 0.92724 0.93639 0.97317 0.81205 0.82161 0.87260 0.87336 0.89660 0.87278 0.86393 0.86241 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.47 18.54 19.00 0.35 -13.12 16 2 C 0.29 7.05 15.33 88.33 1.35 8.41 16 3 C -0.09 -1.94 5.74 -21.30 -0.12 -2.06 16 4 C -0.02 -0.29 9.75 22.52 0.22 -0.07 16 5 C -0.16 -3.48 9.97 22.33 0.22 -3.26 16 6 C 0.14 4.31 6.62 22.64 0.15 4.46 16 7 O -0.25 -9.11 9.95 -30.79 -0.31 -9.42 16 8 C -0.07 -2.96 4.32 22.81 0.10 -2.86 16 9 C -0.09 -4.16 9.92 22.11 0.22 -3.94 16 10 C -0.18 -8.71 8.64 22.48 0.19 -8.51 16 11 C 0.09 4.40 5.57 -21.28 -0.12 4.28 16 12 C -0.48 -23.92 9.03 23.39 0.21 -23.71 16 13 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 14 C 0.04 1.74 5.12 85.23 0.44 2.18 16 15 N -0.81 -39.19 11.01 21.82 0.24 -38.95 16 16 Si 0.98 35.13 29.60 68.60 2.03 37.16 16 17 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 18 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 19 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 20 C -0.23 -10.28 9.74 22.48 0.22 -10.06 16 21 C -0.08 -3.45 9.04 22.11 0.20 -3.25 16 22 C -0.21 -6.46 8.96 22.33 0.20 -6.26 16 23 C -0.03 -0.67 9.75 22.52 0.22 -0.45 16 24 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 25 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 26 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.11 5.54 6.21 -2.91 -0.02 5.52 16 28 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 29 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.12 4.37 6.43 -2.91 -0.02 4.36 16 32 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -54.88 295.11 7.17 -47.70 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 1.15 Total: 21.73 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 3.70 Total: -45.10 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.59 Total: -52.07 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.31 Total: -9.42 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Total: -54.88 7.17 -47.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019867892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.670 kcal (2) G-P(sol) polarization free energy of solvation -54.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds