Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39710 * 120.19596 * 37.64996 * 3 2 1 5 5 C 1.37835 * 119.90291 * 180.02562 * 4 3 2 6 6 C 1.38524 * 120.30880 * 359.74519 * 5 4 3 7 7 C 1.38091 * 120.39439 * 0.50944 * 6 5 4 8 8 C 1.38691 * 120.08865 * 359.49501 * 7 6 5 9 9 O 1.35661 * 120.15457 * 180.23020 * 8 7 6 10 10 C 1.35638 * 117.99986 * 262.12881 * 9 8 7 11 11 C 1.39350 * 119.81772 * 5.91483 * 10 9 8 12 12 C 1.36416 * 120.17840 * 179.75781 * 11 10 9 13 13 C 1.40846 * 119.81618 * 0.53414 * 12 11 10 14 14 C 1.41188 * 120.17546 * 179.69853 * 13 12 11 15 15 H 1.08004 * 119.99626 * 213.91901 * 14 13 12 16 16 C 1.39887 * 120.00080 * 33.92422 * 14 13 12 17 17 N 1.30881 * 120.00104 * 357.72974 * 16 14 13 18 18 Si 1.86803 * 119.99804 * 177.73638 * 16 14 13 19 19 H 1.48503 * 109.47277 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47254 * 119.99688 * 18 16 14 21 21 H 1.48501 * 109.47006 * 239.99444 * 18 16 14 22 22 C 1.40843 * 119.64675 * 359.72036 * 13 12 11 23 23 C 1.36413 * 119.81466 * 359.97438 * 22 13 12 24 24 H 1.07998 * 120.04412 * 359.97438 * 4 3 2 25 25 H 1.08009 * 119.84287 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.80384 * 180.28295 * 6 5 4 27 27 H 1.08005 * 119.95411 * 179.76540 * 7 6 5 28 28 H 1.08006 * 119.91178 * 359.97438 * 11 10 9 29 29 H 1.08003 * 120.09331 * 180.23452 * 12 11 10 30 30 H 0.97004 * 119.99669 * 180.02562 * 17 16 14 31 31 H 1.07997 * 120.09497 * 179.97438 * 22 13 12 32 32 H 1.08010 * 119.91072 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2711 -0.9551 -0.7376 5 6 4.6494 -0.9492 -0.7329 6 6 5.3419 0.0037 -0.0040 7 6 4.6596 0.9509 0.7337 8 6 3.2728 0.9602 0.7407 9 8 2.6012 1.8930 1.4612 10 6 2.1433 1.5415 2.6886 11 6 2.4751 0.2975 3.2218 12 6 2.0228 -0.0616 4.4576 13 6 1.2090 0.8243 5.1903 14 6 0.7314 0.4577 6.4673 15 1 -0.2424 0.7902 6.7955 16 6 1.5195 -0.3359 7.3076 17 7 2.6804 -0.7755 6.8929 18 14 0.9148 -0.7682 9.0213 19 1 -0.4176 -0.1522 9.2462 20 1 0.8066 -2.2436 9.1505 21 1 1.8749 -0.2521 10.0298 22 6 0.8739 2.0776 4.6419 23 6 1.3395 2.4241 3.4074 24 1 2.7353 -1.6979 -1.3100 25 1 5.1920 -1.6888 -1.3031 26 1 6.4219 0.0035 -0.0097 27 1 5.2068 1.6883 1.3024 28 1 3.0950 -0.3827 2.6565 29 1 2.2839 -1.0246 4.8711 30 1 3.2267 -1.3262 7.4755 31 1 0.2501 2.7623 5.1972 32 1 1.0831 3.3847 2.9852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020077500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 46.527623 kcal Electronic energy + Delta-G solvation = -18432.328024 eV Core-core repulsion = 15516.429237 eV Total energy + Delta-G solvation = -2915.898787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39988 -38.14343 -36.55587 -36.11047 -33.41129 -31.34025 -30.46039 -29.70748 -28.94487 -25.21087 -23.81684 -22.80302 -21.20570 -20.72520 -18.88621 -17.61250 -17.34746 -16.15665 -15.93707 -15.19822 -14.79982 -14.15953 -14.03427 -13.68698 -13.19547 -13.03870 -12.88929 -12.77053 -12.52076 -12.35894 -11.99222 -11.67524 -11.61737 -11.51691 -11.23500 -11.05221 -10.73132 -10.10834 -9.85173 -9.51140 -9.19410 -9.03024 -8.64114 -7.74099 -7.03037 -6.66906 -4.38398 0.74756 1.19018 2.66276 2.89411 2.95044 3.06514 3.07817 3.11521 3.15187 3.71309 3.95134 4.04767 4.15179 4.61586 4.80957 4.89470 5.20370 5.36067 5.44586 5.55068 5.79223 6.03495 6.12128 6.17184 6.28811 6.31053 6.49685 6.76994 6.80823 7.00422 7.23583 7.37547 7.49294 7.75588 7.81448 7.95706 8.11413 8.37231 8.58837 8.87052 8.90790 10.25734 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.005136 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.204145 B = 5450.146636 C = 5762.126842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.258 3.742 3 C -0.051 4.051 4 C -0.061 4.061 5 C -0.135 4.135 6 C -0.078 4.078 7 C -0.133 4.133 8 C 0.165 3.835 9 O -0.275 6.275 10 C -0.014 4.014 11 C -0.164 4.164 12 C -0.122 4.122 13 C 0.089 3.911 14 C -0.461 4.461 15 H 0.077 0.923 16 C 0.069 3.931 17 N -0.814 5.814 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.189 4.189 23 C -0.108 4.108 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.278 0.722 31 H 0.104 0.896 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -1.355 -10.358 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.057 4.057 3 C -0.055 4.055 4 C -0.082 4.082 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.152 4.152 8 C 0.119 3.881 9 O -0.189 6.189 10 C -0.055 4.055 11 C -0.183 4.183 12 C -0.141 4.141 13 C 0.086 3.914 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.145 4.145 17 N -0.441 5.441 18 Si 0.740 3.260 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.208 4.208 23 C -0.126 4.126 24 H 0.152 0.848 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.548 -1.308 -10.317 11.787 hybrid contribution 0.396 -0.315 0.889 1.023 sum 5.943 -1.623 -9.428 11.263 Atomic orbital electron populations 1.81162 1.11947 1.07520 1.07833 1.25343 0.92455 0.93954 0.93957 1.16542 0.85205 0.99344 1.04374 1.21059 0.94355 0.96099 0.96671 1.21050 0.93473 0.99833 1.00902 1.21243 1.00400 0.93502 0.94559 1.21386 0.92510 1.00357 1.00910 1.18704 0.90359 0.87819 0.91237 1.83993 1.70270 1.36057 1.28535 1.18687 1.05649 0.97214 0.83921 1.20681 1.03985 0.95210 0.98384 1.21204 1.00495 1.00742 0.91709 1.17695 0.91278 0.89806 0.92582 1.19503 1.03245 1.27538 0.98937 0.90504 1.25865 0.94293 0.93622 1.00735 1.69763 1.09708 1.27668 1.36996 0.86145 0.79822 0.78711 0.81306 1.18582 1.19966 1.19955 1.20714 1.06720 0.97274 0.96117 1.19621 0.99521 0.98084 0.95411 0.84786 0.84872 0.84875 0.84252 0.88573 0.84947 0.91151 0.87819 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.23 18.54 41.84 0.78 -7.45 16 2 C 0.26 4.69 14.58 -22.48 -0.33 4.36 16 3 C -0.05 -0.78 5.46 -106.68 -0.58 -1.37 16 4 C -0.06 -0.69 9.76 -39.18 -0.38 -1.08 16 5 C -0.13 -1.25 10.02 -39.62 -0.40 -1.65 16 6 C -0.08 -0.78 10.03 -39.53 -0.40 -1.18 16 7 C -0.13 -1.76 9.96 -39.47 -0.39 -2.16 16 8 C 0.17 2.74 4.04 -38.67 -0.16 2.58 16 9 O -0.27 -5.55 9.48 -2.07 -0.02 -5.57 16 10 C -0.01 -0.33 6.34 -38.75 -0.25 -0.57 16 11 C -0.16 -3.83 9.04 -39.82 -0.36 -4.19 16 12 C -0.12 -3.17 8.61 -39.25 -0.34 -3.50 16 13 C 0.09 2.36 5.55 -106.81 -0.59 1.77 16 14 C -0.46 -12.25 9.03 -37.85 -0.34 -12.59 16 15 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 16 C 0.07 1.75 5.41 -17.34 -0.09 1.65 16 17 N -0.81 -20.95 10.61 55.54 0.59 -20.36 16 18 Si 0.92 18.89 29.56 -169.99 -5.02 13.87 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.19 -4.64 9.74 -39.25 -0.38 -5.03 16 23 C -0.11 -2.50 9.92 -39.83 -0.40 -2.90 16 24 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 25 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 26 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.14 1.73 8.06 -52.48 -0.42 1.30 16 28 H 0.10 2.06 6.67 -52.48 -0.35 1.71 16 29 H 0.13 3.56 6.14 -52.48 -0.32 3.23 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 31 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 294.29 15.07 4.43 4.43 Total: -1.00 -29.59 294.29 -7.38 -36.98 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -2.76 Total: 3.94 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -5.38 Total: -25.84 kcal Atomic # 7 Polarization: -29.18 SS G_CDS: 1.36 Total: -27.81 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.02 Total: -5.57 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.59 -7.38 -36.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020077500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.503 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds