Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39710 * 120.19596 * 37.64996 * 3 2 1 5 5 C 1.37835 * 119.90291 * 180.02562 * 4 3 2 6 6 C 1.38524 * 120.30880 * 359.74519 * 5 4 3 7 7 C 1.38091 * 120.39439 * 0.50944 * 6 5 4 8 8 C 1.38691 * 120.08865 * 359.49501 * 7 6 5 9 9 O 1.35661 * 120.15457 * 180.23020 * 8 7 6 10 10 C 1.35638 * 117.99986 * 262.12881 * 9 8 7 11 11 C 1.39350 * 119.81772 * 5.91483 * 10 9 8 12 12 C 1.36416 * 120.17840 * 179.75781 * 11 10 9 13 13 C 1.40846 * 119.81618 * 0.53414 * 12 11 10 14 14 C 1.41188 * 120.17546 * 179.69853 * 13 12 11 15 15 H 1.08004 * 119.99626 * 213.91901 * 14 13 12 16 16 C 1.39887 * 120.00080 * 33.92422 * 14 13 12 17 17 N 1.30881 * 120.00104 * 357.72974 * 16 14 13 18 18 Si 1.86803 * 119.99804 * 177.73638 * 16 14 13 19 19 H 1.48503 * 109.47277 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47254 * 119.99688 * 18 16 14 21 21 H 1.48501 * 109.47006 * 239.99444 * 18 16 14 22 22 C 1.40843 * 119.64675 * 359.72036 * 13 12 11 23 23 C 1.36413 * 119.81466 * 359.97438 * 22 13 12 24 24 H 1.07998 * 120.04412 * 359.97438 * 4 3 2 25 25 H 1.08009 * 119.84287 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.80384 * 180.28295 * 6 5 4 27 27 H 1.08005 * 119.95411 * 179.76540 * 7 6 5 28 28 H 1.08006 * 119.91178 * 359.97438 * 11 10 9 29 29 H 1.08003 * 120.09331 * 180.23452 * 12 11 10 30 30 H 0.97004 * 119.99669 * 180.02562 * 17 16 14 31 31 H 1.07997 * 120.09497 * 179.97438 * 22 13 12 32 32 H 1.08010 * 119.91072 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2711 -0.9551 -0.7376 5 6 4.6494 -0.9492 -0.7329 6 6 5.3419 0.0037 -0.0040 7 6 4.6596 0.9509 0.7337 8 6 3.2728 0.9602 0.7407 9 8 2.6012 1.8930 1.4612 10 6 2.1433 1.5415 2.6886 11 6 2.4751 0.2975 3.2218 12 6 2.0228 -0.0616 4.4576 13 6 1.2090 0.8243 5.1903 14 6 0.7314 0.4577 6.4673 15 1 -0.2424 0.7902 6.7955 16 6 1.5195 -0.3359 7.3076 17 7 2.6804 -0.7755 6.8929 18 14 0.9148 -0.7682 9.0213 19 1 -0.4176 -0.1522 9.2462 20 1 0.8066 -2.2436 9.1505 21 1 1.8749 -0.2521 10.0298 22 6 0.8739 2.0776 4.6419 23 6 1.3395 2.4241 3.4074 24 1 2.7353 -1.6979 -1.3100 25 1 5.1920 -1.6888 -1.3031 26 1 6.4219 0.0035 -0.0097 27 1 5.2068 1.6883 1.3024 28 1 3.0950 -0.3827 2.6565 29 1 2.2839 -1.0246 4.8711 30 1 3.2267 -1.3262 7.4755 31 1 0.2501 2.7623 5.1972 32 1 1.0831 3.3847 2.9852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020077500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = 31.416728 kcal Electronic energy + Delta-G solvation = -18432.983281 eV Core-core repulsion = 15516.429237 eV Total energy + Delta-G solvation = -2916.554044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.74899 -39.57469 -38.18547 -37.49660 -35.27454 -32.36186 -31.80433 -31.58080 -30.56488 -27.02128 -24.93919 -24.04402 -23.07950 -22.30014 -20.14810 -19.31073 -18.94596 -17.61003 -17.24911 -16.67292 -16.03280 -15.82950 -15.26326 -15.12077 -14.75977 -14.58723 -14.40456 -14.20189 -14.11357 -13.88752 -13.47673 -13.37802 -13.06722 -12.82420 -12.70150 -12.49810 -12.27338 -11.76212 -11.67176 -11.37138 -11.02713 -10.01657 -9.73200 -9.64169 -8.90649 -8.53679 -6.35405 -0.33097 0.21841 0.83212 0.97734 1.39039 1.46590 1.53865 1.56377 1.91217 2.23029 2.40072 2.73199 2.83348 2.99274 3.58482 3.85205 4.13560 4.21214 4.30032 4.33741 4.41443 4.43421 4.83066 4.91447 4.95376 5.09480 5.27418 5.29487 5.33883 5.43015 5.48743 5.59391 5.81129 5.88637 6.04052 6.19474 6.39026 6.54659 6.76914 6.93082 7.02646 8.41145 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.005136 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.204145 B = 5450.146636 C = 5762.126842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.271 3.729 3 C -0.076 4.076 4 C -0.054 4.054 5 C -0.112 4.112 6 C -0.061 4.061 7 C -0.140 4.140 8 C 0.119 3.881 9 O -0.284 6.284 10 C 0.001 3.999 11 C -0.162 4.162 12 C -0.142 4.142 13 C 0.054 3.946 14 C -0.498 4.498 15 H 0.073 0.927 16 C 0.029 3.971 17 N -0.842 5.842 18 Si 0.988 3.012 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.197 4.197 23 C -0.122 4.122 24 H 0.160 0.840 25 H 0.181 0.819 26 H 0.175 0.825 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.285 0.715 31 H 0.113 0.887 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -2.502 -11.606 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.043 4.043 3 C -0.080 4.080 4 C -0.074 4.074 5 C -0.130 4.130 6 C -0.079 4.079 7 C -0.158 4.158 8 C 0.074 3.926 9 O -0.198 6.198 10 C -0.040 4.040 11 C -0.181 4.181 12 C -0.162 4.162 13 C 0.052 3.948 14 C -0.529 4.529 15 H 0.091 0.909 16 C -0.183 4.183 17 N -0.470 5.470 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.216 4.216 23 C -0.141 4.141 24 H 0.177 0.823 25 H 0.198 0.802 26 H 0.193 0.807 27 H 0.160 0.840 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.915 -2.447 -11.599 14.254 hybrid contribution -0.140 0.027 1.012 1.022 sum 7.775 -2.421 -10.587 13.356 Atomic orbital electron populations 1.81152 1.13464 1.09357 1.09825 1.25992 0.93242 0.92551 0.92548 1.16780 0.83713 1.01048 1.06445 1.21471 0.95522 0.94957 0.95435 1.21635 0.92508 0.99574 0.99245 1.21764 1.02416 0.91538 0.92196 1.21575 0.91065 1.01440 1.01737 1.19103 0.91638 0.89236 0.92671 1.84014 1.70626 1.37769 1.27382 1.18789 1.03858 0.96327 0.85044 1.20779 1.03824 0.95922 0.97565 1.21147 1.01775 1.00357 0.92875 1.18029 0.92526 0.90872 0.93348 1.19717 1.03787 1.29596 0.99810 0.90873 1.26714 0.94175 0.92937 1.04497 1.69827 1.10596 1.28030 1.38571 0.85060 0.79226 0.78667 0.76113 1.18504 1.19021 1.19033 1.20907 1.06895 0.97006 0.96836 1.19912 0.99675 0.99239 0.95254 0.82259 0.80160 0.80744 0.83974 0.86756 0.86488 0.90413 0.86864 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.11 18.54 19.00 0.35 -18.75 16 2 C 0.27 9.92 14.58 88.33 1.29 11.21 16 3 C -0.08 -2.24 5.46 -21.20 -0.12 -2.36 16 4 C -0.05 -1.01 9.76 22.53 0.22 -0.79 16 5 C -0.11 -1.44 10.02 22.24 0.22 -1.22 16 6 C -0.06 -0.90 10.03 22.30 0.22 -0.67 16 7 C -0.14 -3.34 9.96 22.34 0.22 -3.12 16 8 C 0.12 3.81 4.04 22.86 0.09 3.91 16 9 O -0.28 -11.53 9.48 -30.31 -0.29 -11.82 16 10 C 0.00 0.05 6.34 22.81 0.14 0.19 16 11 C -0.16 -7.73 9.04 22.11 0.20 -7.53 16 12 C -0.14 -7.65 8.61 22.48 0.19 -7.45 16 13 C 0.05 3.02 5.55 -21.28 -0.12 2.90 16 14 C -0.50 -27.51 9.03 23.39 0.21 -27.30 16 15 H 0.07 3.92 7.85 -2.91 -0.02 3.89 16 16 C 0.03 1.46 5.41 85.23 0.46 1.92 16 17 N -0.84 -44.34 10.61 21.82 0.23 -44.11 16 18 Si 0.99 39.14 29.56 68.60 2.03 41.17 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.20 -10.04 9.74 22.48 0.22 -9.82 16 23 C -0.12 -5.80 9.92 22.11 0.22 -5.58 16 24 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 25 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 26 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.11 4.89 6.67 -2.91 -0.02 4.87 16 29 H 0.12 6.57 6.14 -2.91 -0.02 6.55 16 30 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 31 H 0.11 5.35 8.06 -2.91 -0.02 5.33 16 32 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -68.75 294.29 7.16 -61.60 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.15 Total: 17.63 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 3.68 Total: -45.72 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.58 Total: -62.86 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.29 Total: -11.82 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -68.75 7.16 -61.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020077500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.012 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds