Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 120.00312 * 2 1 4 4 H 1.48503 * 109.47089 * 240.00056 * 3 2 1 5 5 H 1.48500 * 109.46524 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47261 * 119.99546 * 3 2 1 7 7 C 1.39884 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 197.93237 * 7 2 1 9 9 C 1.41347 * 120.00159 * 17.92566 * 7 2 1 10 10 C 1.41088 * 120.05858 * 204.55487 * 9 7 2 11 11 C 1.36226 * 120.40019 * 180.02562 * 10 9 7 12 12 C 1.39200 * 120.34909 * 359.97438 * 11 10 9 13 13 O 1.35092 * 133.51187 * 180.02562 * 12 11 10 14 14 C 1.34648 * 108.20018 * 180.02562 * 13 12 11 15 15 C 1.47802 * 124.93275 * 179.97438 * 14 13 12 16 16 C 1.39590 * 120.14898 * 179.72237 * 15 14 13 17 17 C 1.37952 * 119.85032 * 179.71962 * 16 15 14 18 18 C 1.38362 * 120.14978 * 0.53986 * 17 16 15 19 19 C 1.38360 * 120.29135 * 359.76001 * 18 17 16 20 20 C 1.37957 * 120.14929 * 359.96021 * 19 18 17 21 21 N 1.30843 * 110.14017 * 359.97438 * 14 13 12 22 22 C 1.35880 * 108.71855 * 359.97438 * 21 14 13 23 23 C 1.39135 * 133.55924 * 180.02562 * 22 21 14 24 24 H 0.97006 * 119.99906 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.79868 * 0.04260 * 10 9 7 26 26 H 1.08008 * 119.82708 * 180.02562 * 11 10 9 27 27 H 1.07993 * 120.07075 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.92566 * 180.27548 * 17 16 15 29 29 H 1.07997 * 119.85795 * 179.74153 * 18 17 16 30 30 H 1.08002 * 119.92617 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.07490 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.31271 * 359.69611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0081 -1.2114 0.0005 8 1 3.0488 -1.2340 0.2885 9 6 1.3529 -2.4060 -0.3757 10 6 1.8286 -3.6499 0.0903 11 6 1.2027 -4.8055 -0.2684 12 6 0.0859 -4.7721 -1.0986 13 8 -0.7219 -5.7266 -1.6098 14 6 -1.6619 -5.1235 -2.3619 15 6 -2.7371 -5.8241 -3.0951 16 6 -3.6652 -5.0969 -3.8424 17 6 -4.6627 -5.7575 -4.5291 18 6 -4.7513 -7.1370 -4.4693 19 6 -3.8383 -7.8634 -3.7255 20 6 -2.8324 -7.2156 -3.0387 21 7 -1.4855 -3.8270 -2.3493 22 6 -0.4064 -3.5413 -1.5746 23 6 0.2270 -2.3567 -1.2121 24 1 -0.4850 0.8401 -0.0004 25 1 2.6940 -3.6860 0.7354 26 1 1.5745 -5.7526 0.0940 27 1 -3.5999 -4.0198 -3.8861 28 1 -5.3787 -5.1963 -5.1112 29 1 -5.5366 -7.6490 -5.0054 30 1 -3.9133 -8.9399 -3.6827 31 1 -2.1202 -7.7839 -2.4587 32 1 -0.1400 -1.4087 -1.5768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033420354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = 51.504735 kcal Electronic energy + Delta-G solvation = -18159.646198 eV Core-core repulsion = 15243.963235 eV Total energy + Delta-G solvation = -2915.682963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95776 -38.92463 -36.82705 -33.80400 -33.53808 -31.59411 -30.92662 -29.43721 -28.19698 -25.52510 -23.62791 -22.62746 -21.35332 -20.78361 -20.32634 -17.79755 -17.29203 -16.26309 -15.95132 -15.67807 -15.35093 -14.82346 -14.45514 -13.88344 -13.41557 -13.12723 -12.85855 -12.82103 -12.70315 -11.96370 -11.54482 -11.41720 -11.17077 -11.10310 -11.03531 -10.68007 -10.51409 -10.24763 -10.10655 -9.38705 -9.23680 -8.96941 -8.92803 -7.47262 -7.17685 -6.84175 -4.47146 0.85611 1.39928 2.18998 2.60497 3.03656 3.04996 3.10762 3.36845 3.45133 3.87043 4.01265 4.46299 4.52028 4.92123 4.95424 5.11789 5.41641 5.44856 5.53250 5.76108 5.83346 5.97840 6.12489 6.27489 6.41047 6.45906 6.52595 6.56211 6.66839 6.89989 6.95801 7.06805 7.34330 7.48005 7.61679 7.74029 7.94969 8.28422 8.65637 8.72193 8.78263 10.09784 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.035240 B = 0.004350 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.368971 B = 6434.903190 C = 7151.621282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.100 3.900 10 C -0.159 4.159 11 C -0.082 4.082 12 C -0.094 4.094 13 O -0.224 6.224 14 C 0.239 3.761 15 C -0.001 4.001 16 C -0.075 4.075 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.094 4.094 21 N -0.468 5.468 22 C 0.047 3.953 23 C -0.133 4.133 24 H 0.284 0.716 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -8.721 -5.575 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.096 3.904 10 C -0.178 4.178 11 C -0.101 4.101 12 C -0.142 4.142 13 O -0.117 6.117 14 C 0.031 3.969 15 C -0.002 4.002 16 C -0.095 4.095 17 C -0.141 4.141 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.114 4.114 21 N -0.200 5.200 22 C -0.064 4.064 23 C -0.154 4.154 24 H 0.095 0.905 25 H 0.133 0.867 26 H 0.123 0.877 27 H 0.157 0.843 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.321 -8.110 -5.830 11.820 hybrid contribution 0.741 0.247 0.499 0.927 sum -5.580 -7.863 -5.330 11.017 Atomic orbital electron populations 1.69829 1.07637 1.29744 1.33741 1.25938 0.94758 1.01525 0.92239 0.86309 0.80105 0.79987 0.80037 1.18694 1.20240 1.18914 1.19466 0.98237 0.90907 1.40060 0.89871 1.17421 0.91307 0.92230 0.89409 1.20852 1.01964 0.91839 1.03121 1.19078 0.93587 0.98399 0.99030 1.20076 0.99262 0.86271 1.08592 1.84241 1.36165 1.36722 1.54558 1.23426 0.91481 0.87181 0.94830 1.17436 0.92579 0.92332 0.97882 1.21263 0.92743 1.01052 0.94394 1.21082 0.98535 0.94516 0.99987 1.21272 0.98852 0.94277 0.98784 1.21024 0.95243 0.99980 0.97944 1.21282 0.98390 0.92971 0.98722 1.70665 1.17412 1.11674 1.20232 1.19736 0.93425 0.95067 0.98207 1.20485 0.99086 0.94385 1.01407 0.90459 0.86700 0.87721 0.84323 0.85403 0.85887 0.85595 0.85207 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.23 10.96 55.54 0.61 -19.62 16 2 C 0.07 1.83 5.13 -17.35 -0.09 1.74 16 3 Si 0.91 18.17 29.60 -169.99 -5.03 13.14 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.65 9.04 -37.78 -0.34 -12.00 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 9 C 0.10 2.61 5.57 -106.84 -0.60 2.02 16 10 C -0.16 -3.69 9.71 -39.23 -0.38 -4.07 16 11 C -0.08 -1.85 9.98 -39.95 -0.40 -2.25 16 12 C -0.09 -2.31 7.44 -38.24 -0.28 -2.60 16 13 O -0.22 -5.11 10.44 2.54 0.03 -5.09 16 14 C 0.24 5.18 7.84 -14.06 -0.11 5.07 16 15 C 0.00 -0.02 5.87 -104.98 -0.62 -0.64 16 16 C -0.08 -1.12 9.67 -39.18 -0.38 -1.50 16 17 C -0.12 -1.42 10.03 -39.64 -0.40 -1.82 16 18 C -0.11 -1.17 10.04 -39.49 -0.40 -1.57 16 19 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 20 C -0.09 -1.32 9.71 -39.18 -0.38 -1.71 16 21 N -0.47 -11.45 10.89 -9.34 -0.10 -11.55 16 22 C 0.05 1.23 7.21 -84.75 -0.61 0.62 16 23 C -0.13 -3.60 8.74 -38.46 -0.34 -3.94 16 24 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 25 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 26 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 27 H 0.14 2.15 7.79 -52.49 -0.41 1.74 16 28 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.75 7.86 -52.48 -0.41 1.33 16 32 H 0.13 3.71 6.17 -52.49 -0.32 3.38 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -29.40 287.54 -8.69 -38.08 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -2.81 Total: 5.11 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -5.72 Total: -24.41 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.51 Total: -31.17 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: 0.03 Total: -5.09 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.40 -8.69 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033420354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.589 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds