Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 120.00312 * 2 1 4 4 H 1.48503 * 109.47089 * 240.00056 * 3 2 1 5 5 H 1.48500 * 109.46524 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47261 * 119.99546 * 3 2 1 7 7 C 1.39884 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 197.93237 * 7 2 1 9 9 C 1.41347 * 120.00159 * 17.92566 * 7 2 1 10 10 C 1.41088 * 120.05858 * 204.55487 * 9 7 2 11 11 C 1.36226 * 120.40019 * 180.02562 * 10 9 7 12 12 C 1.39200 * 120.34909 * 359.97438 * 11 10 9 13 13 O 1.35092 * 133.51187 * 180.02562 * 12 11 10 14 14 C 1.34648 * 108.20018 * 180.02562 * 13 12 11 15 15 C 1.47802 * 124.93275 * 179.97438 * 14 13 12 16 16 C 1.39590 * 120.14898 * 179.72237 * 15 14 13 17 17 C 1.37952 * 119.85032 * 179.71962 * 16 15 14 18 18 C 1.38362 * 120.14978 * 0.53986 * 17 16 15 19 19 C 1.38360 * 120.29135 * 359.76001 * 18 17 16 20 20 C 1.37957 * 120.14929 * 359.96021 * 19 18 17 21 21 N 1.30843 * 110.14017 * 359.97438 * 14 13 12 22 22 C 1.35880 * 108.71855 * 359.97438 * 21 14 13 23 23 C 1.39135 * 133.55924 * 180.02562 * 22 21 14 24 24 H 0.97006 * 119.99906 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.79868 * 0.04260 * 10 9 7 26 26 H 1.08008 * 119.82708 * 180.02562 * 11 10 9 27 27 H 1.07993 * 120.07075 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.92566 * 180.27548 * 17 16 15 29 29 H 1.07997 * 119.85795 * 179.74153 * 18 17 16 30 30 H 1.08002 * 119.92617 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.07490 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.31271 * 359.69611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0081 -1.2114 0.0005 8 1 3.0488 -1.2340 0.2885 9 6 1.3529 -2.4060 -0.3757 10 6 1.8286 -3.6499 0.0903 11 6 1.2027 -4.8055 -0.2684 12 6 0.0859 -4.7721 -1.0986 13 8 -0.7219 -5.7266 -1.6098 14 6 -1.6619 -5.1235 -2.3619 15 6 -2.7371 -5.8241 -3.0951 16 6 -3.6652 -5.0969 -3.8424 17 6 -4.6627 -5.7575 -4.5291 18 6 -4.7513 -7.1370 -4.4693 19 6 -3.8383 -7.8634 -3.7255 20 6 -2.8324 -7.2156 -3.0387 21 7 -1.4855 -3.8270 -2.3493 22 6 -0.4064 -3.5413 -1.5746 23 6 0.2270 -2.3567 -1.2121 24 1 -0.4850 0.8401 -0.0004 25 1 2.6940 -3.6860 0.7354 26 1 1.5745 -5.7526 0.0940 27 1 -3.5999 -4.0198 -3.8861 28 1 -5.3787 -5.1963 -5.1112 29 1 -5.5366 -7.6490 -5.0054 30 1 -3.9133 -8.9399 -3.6827 31 1 -2.1202 -7.7839 -2.4587 32 1 -0.1400 -1.4087 -1.5768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033420354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = 33.771276 kcal Electronic energy + Delta-G solvation = -18160.415178 eV Core-core repulsion = 15243.963235 eV Total energy + Delta-G solvation = -2916.451944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.74949 -39.99014 -38.66674 -35.61891 -35.35883 -32.87233 -31.95067 -31.30664 -29.91967 -27.35453 -25.07207 -23.84431 -23.05586 -22.40399 -21.92527 -19.64943 -18.62194 -18.11037 -17.49626 -17.41713 -16.71981 -16.28268 -15.64284 -15.40451 -14.67582 -14.65974 -14.42428 -14.38142 -13.93324 -13.75543 -13.38696 -12.83461 -12.80380 -12.46495 -12.39937 -12.29732 -12.14981 -11.95327 -11.86116 -11.20566 -11.04664 -10.24393 -9.96279 -9.37680 -8.95942 -8.69075 -6.43769 -0.46856 0.40923 0.62353 0.72593 1.38861 1.48774 1.53142 1.70400 1.82533 2.18414 2.60090 2.85952 2.94983 3.51358 3.91588 4.00529 4.02703 4.18926 4.31400 4.46257 4.53603 4.57249 4.66865 4.82278 4.88189 5.05131 5.08492 5.17389 5.38238 5.46283 5.50301 5.50423 5.65682 5.74832 5.84771 5.95874 5.97859 6.37567 6.74843 6.81710 6.91381 8.26287 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.035240 B = 0.004350 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.368971 B = 6434.903190 C = 7151.621282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.483 4.483 8 H 0.097 0.903 9 C 0.080 3.920 10 C -0.166 4.166 11 C -0.070 4.070 12 C -0.121 4.121 13 O -0.223 6.223 14 C 0.259 3.741 15 C -0.048 4.048 16 C -0.088 4.088 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.116 4.116 20 C -0.096 4.096 21 N -0.512 5.512 22 C 0.026 3.974 23 C -0.173 4.173 24 H 0.289 0.711 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.119 0.881 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.131 0.869 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 -10.801 -6.309 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.512 4.512 8 H 0.115 0.885 9 C 0.076 3.924 10 C -0.185 4.185 11 C -0.089 4.089 12 C -0.169 4.169 13 O -0.116 6.116 14 C 0.051 3.949 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.137 4.137 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.116 4.116 21 N -0.244 5.244 22 C -0.084 4.084 23 C -0.195 4.195 24 H 0.100 0.900 25 H 0.163 0.837 26 H 0.163 0.837 27 H 0.137 0.863 28 H 0.177 0.823 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.149 0.851 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.125 -10.203 -6.557 14.066 hybrid contribution 0.768 0.690 0.600 1.194 sum -6.357 -9.512 -5.957 12.899 Atomic orbital electron populations 1.69935 1.09535 1.30979 1.34228 1.26942 0.95388 1.05198 0.90988 0.85142 0.78618 0.74900 0.80438 1.18374 1.19700 1.17403 1.19874 0.98986 0.91601 1.40710 0.88479 1.17812 0.91218 0.94014 0.89328 1.21151 1.02883 0.90990 1.03487 1.19497 0.92177 0.99889 0.97297 1.20418 1.00549 0.86032 1.09914 1.84235 1.36275 1.36315 1.54742 1.24524 0.90920 0.86810 0.92611 1.17670 0.92958 0.93820 1.00443 1.21302 0.93800 1.00415 0.95270 1.21451 0.97562 0.95643 0.99020 1.21849 0.98614 0.93575 0.96746 1.21484 0.93646 1.01920 0.96293 1.21447 0.99491 0.91503 0.99121 1.70662 1.18195 1.13385 1.22206 1.19991 0.94078 0.95703 0.98623 1.20330 1.01239 0.93755 1.04157 0.89988 0.83716 0.83735 0.86337 0.82340 0.81356 0.81743 0.85108 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.53 10.96 21.82 0.24 -44.29 16 2 C 0.03 1.55 5.13 85.23 0.44 1.99 16 3 Si 0.99 37.68 29.60 68.60 2.03 39.71 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.48 -25.33 9.04 23.43 0.21 -25.12 16 8 H 0.10 4.64 7.91 -2.91 -0.02 4.62 16 9 C 0.08 4.37 5.57 -21.30 -0.12 4.25 16 10 C -0.17 -7.83 9.71 22.50 0.22 -7.61 16 11 C -0.07 -3.16 9.98 22.03 0.22 -2.94 16 12 C -0.12 -6.18 7.44 23.14 0.17 -6.01 16 13 O -0.22 -10.45 10.44 -13.81 -0.14 -10.59 16 14 C 0.26 11.78 7.84 87.37 0.68 12.47 16 15 C -0.05 -1.64 5.87 -20.09 -0.12 -1.76 16 16 C -0.09 -2.64 9.67 22.53 0.22 -2.43 16 17 C -0.12 -2.38 10.03 22.23 0.22 -2.16 16 18 C -0.09 -1.38 10.04 22.33 0.22 -1.16 16 19 C -0.12 -2.06 10.03 22.23 0.22 -1.83 16 20 C -0.10 -2.54 9.71 22.53 0.22 -2.32 16 21 N -0.51 -26.91 10.89 -297.60 -3.24 -30.15 16 22 C 0.03 1.49 7.21 39.37 0.28 1.77 16 23 C -0.17 -10.14 8.74 23.00 0.20 -9.94 16 24 H 0.29 14.29 8.30 -92.70 -0.77 13.52 16 25 H 0.15 5.78 8.06 -2.91 -0.02 5.76 16 26 H 0.14 5.25 8.06 -2.91 -0.02 5.23 16 27 H 0.12 3.93 7.79 -2.91 -0.02 3.91 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.13 3.35 7.86 -2.91 -0.02 3.33 16 32 H 0.10 6.46 6.17 -2.91 -0.02 6.44 16 Total: -1.00 -70.12 287.54 3.33 -66.79 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 1.15 Total: 21.33 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 3.30 Total: -42.79 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.00 Total: -74.44 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.14 Total: -10.59 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -70.12 3.33 -66.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033420354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.562 kcal (2) G-P(sol) polarization free energy of solvation -70.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds