Wall clock time and date at job start Mon Mar 30 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35376 * 117.00325 * 2 1 4 4 N 1.28632 * 124.86861 * 359.95853 * 3 2 1 5 5 C 1.34888 * 117.93006 * 180.02562 * 4 3 2 6 6 C 1.39158 * 112.91913 * 0.02562 * 5 4 3 7 7 S 1.75828 * 124.86571 * 180.02562 * 3 2 1 8 8 C 1.41800 * 120.30199 * 180.02562 * 6 5 4 9 9 C 1.40837 * 120.10619 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00656 * 329.98698 * 9 8 6 11 11 C 1.39842 * 119.99593 * 149.98845 * 9 8 6 12 12 N 1.30954 * 120.00008 * 161.77114 * 11 9 8 13 13 Si 1.86795 * 120.00275 * 341.76706 * 11 9 8 14 14 H 1.48500 * 109.47009 * 95.41231 * 13 11 9 15 15 H 1.48505 * 109.47445 * 215.40995 * 13 11 9 16 16 H 1.48502 * 109.47126 * 335.41569 * 13 11 9 17 17 C 1.40663 * 119.78349 * 0.02562 * 8 6 5 18 18 C 1.37593 * 119.73116 * 359.69999 * 17 8 6 19 19 C 1.38551 * 120.83409 * 0.57690 * 18 17 8 20 20 O 1.35650 * 119.57056 * 179.71753 * 19 18 17 21 21 C 1.42910 * 116.99979 * 359.72373 * 20 19 18 22 22 H 1.08997 * 109.47749 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46737 * 300.00282 * 1 2 3 24 24 H 1.08999 * 109.46790 * 59.99483 * 1 2 3 25 25 H 0.96993 * 120.00140 * 180.02562 * 12 11 9 26 26 H 1.08003 * 120.13106 * 179.97438 * 17 8 6 27 27 H 1.07998 * 119.58257 * 180.29540 * 18 17 8 28 28 H 1.08999 * 109.46474 * 60.00245 * 21 20 19 29 29 H 1.08994 * 109.47386 * 180.02562 * 21 20 19 30 30 H 1.09003 * 109.47222 * 300.00705 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 7 1.4372 2.3406 -0.0008 5 6 2.1904 3.4596 -0.0012 6 6 3.5563 3.1935 -0.0013 7 16 3.7854 1.4467 -0.0006 8 6 4.4926 4.2584 -0.0011 9 6 5.8741 3.9844 -0.0007 10 1 6.2462 3.0851 0.4674 11 6 6.7641 4.8770 -0.6063 12 7 8.0395 4.8302 -0.3130 13 14 6.1337 6.1361 -1.8338 14 1 5.8842 7.4240 -1.1378 15 1 7.1470 6.3381 -2.9004 16 1 4.8687 5.6473 -2.4388 17 6 4.0372 5.5893 -0.0004 18 6 2.6858 5.8481 -0.0060 19 6 1.7646 4.8132 -0.0005 20 8 0.4382 5.0976 -0.0004 21 6 0.0709 6.4787 -0.0001 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 8.6567 5.4495 -0.7328 26 1 4.7454 6.4047 0.0001 27 1 2.3388 6.8708 -0.0103 28 1 0.4741 6.9620 -0.8900 29 1 -1.0156 6.5657 0.0004 30 1 0.4741 6.9618 0.8900 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034161192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:17 Heat of formation + Delta-G solvation = -19.126930 kcal Electronic energy + Delta-G solvation = -17510.240365 eV Core-core repulsion = 14591.105440 eV Total energy + Delta-G solvation = -2919.134925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71546 -38.67574 -37.14972 -35.49461 -33.26595 -30.04399 -28.94754 -27.46202 -27.00095 -24.75999 -23.27609 -21.18236 -20.69218 -18.34665 -17.80611 -16.84992 -16.27856 -15.84447 -15.48871 -15.04022 -14.98163 -14.50399 -13.98889 -13.41408 -13.19922 -12.95954 -12.70502 -11.95635 -11.79533 -11.78006 -11.45488 -11.19241 -10.96606 -10.61201 -10.58197 -10.25472 -9.84301 -9.82609 -9.24991 -9.01920 -8.75117 -7.51292 -7.13621 -6.97867 -4.58683 1.44463 1.51332 2.23721 2.65012 2.95905 3.09557 3.14636 3.30685 3.83664 3.85072 4.14739 4.31080 4.78900 5.06985 5.39554 5.45828 5.49897 5.57480 5.70280 5.77184 5.88021 6.09553 6.20075 6.34859 6.70782 6.88619 7.19153 7.27029 7.44338 7.54929 8.00084 8.10097 8.24718 8.50045 8.59152 9.87483 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.008634 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.837148 B = 3242.267736 C = 4548.175596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.287 6.287 3 C 0.254 3.746 4 N -0.519 5.519 5 C 0.125 3.875 6 C -0.226 4.226 7 S 0.114 5.886 8 C 0.120 3.880 9 C -0.437 4.437 10 H 0.095 0.905 11 C 0.086 3.914 12 N -0.794 5.794 13 Si 0.909 3.091 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.242 1.242 17 C -0.215 4.215 18 C -0.132 4.132 19 C 0.035 3.965 20 O -0.315 6.315 21 C 0.034 3.966 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.289 0.711 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 -0.906 -0.842 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.193 6.193 3 C -0.068 4.068 4 N -0.251 5.251 5 C 0.008 3.992 6 C -0.344 4.344 7 S 0.364 5.636 8 C 0.114 3.886 9 C -0.465 4.465 10 H 0.113 0.887 11 C -0.135 4.135 12 N -0.417 5.417 13 Si 0.735 3.265 14 H -0.193 1.193 15 H -0.214 1.214 16 H -0.165 1.165 17 C -0.238 4.238 18 C -0.153 4.153 19 C -0.013 4.013 20 O -0.230 6.230 21 C -0.062 4.062 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.641 -2.028 -0.846 8.916 hybrid contribution -0.569 1.841 -0.463 1.982 sum -9.210 -0.187 -1.309 9.304 Atomic orbital electron populations 1.22923 0.77503 1.02678 1.02707 1.86236 1.22418 1.21955 1.88672 1.25473 0.94238 0.87405 0.99715 1.66346 1.38851 0.97018 1.22852 1.17365 0.87511 0.89006 1.05341 1.23167 0.95675 0.95104 1.20461 1.84631 0.98549 1.01250 1.79144 1.16805 0.92215 0.88751 0.90876 1.19350 0.88985 1.07406 1.30735 0.88674 1.26168 0.94412 0.96592 0.96302 1.69726 1.04139 1.33077 1.34781 0.86312 0.80130 0.80116 0.79944 1.19270 1.21408 1.16486 1.20647 0.93994 0.95481 1.13692 1.20500 0.93616 0.96489 1.04681 1.17802 0.81907 0.89468 1.12109 1.85947 1.21577 1.24926 1.90506 1.22820 1.00417 0.82516 1.00493 0.88578 0.92271 0.92283 0.90036 0.86697 0.86783 0.93695 0.89602 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.62 101.05 1.07 1.61 16 2 O -0.29 -4.97 10.55 -17.82 -0.19 -5.16 16 3 C 0.25 5.19 8.32 51.42 0.43 5.62 16 4 N -0.52 -11.64 9.88 -11.78 -0.12 -11.75 16 5 C 0.12 2.98 6.87 -84.78 -0.58 2.39 16 6 C -0.23 -5.45 6.38 -37.88 -0.24 -5.70 16 7 S 0.11 2.39 23.14 -107.50 -2.49 -0.09 16 8 C 0.12 3.00 5.11 -106.64 -0.55 2.45 16 9 C -0.44 -11.31 9.33 -38.00 -0.35 -11.67 16 10 H 0.10 2.59 8.04 -52.49 -0.42 2.16 16 11 C 0.09 2.15 5.40 -17.33 -0.09 2.05 16 12 N -0.79 -20.08 13.93 55.54 0.77 -19.30 16 13 Si 0.91 19.68 24.51 -169.99 -4.17 15.51 16 14 H -0.27 -5.49 6.71 56.52 0.38 -5.11 16 15 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.24 -5.43 6.87 56.52 0.39 -5.05 16 17 C -0.21 -4.97 7.15 -38.90 -0.28 -5.25 16 18 C -0.13 -2.80 8.95 -39.70 -0.36 -3.16 16 19 C 0.03 0.79 6.78 -38.07 -0.26 0.53 16 20 O -0.31 -6.42 10.49 -18.65 -0.20 -6.62 16 21 C 0.03 0.49 9.79 101.05 0.99 1.48 16 22 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 26 H 0.12 2.57 4.74 -52.48 -0.25 2.32 16 27 H 0.11 2.02 6.17 -52.49 -0.32 1.70 16 28 H 0.04 0.61 7.61 -51.93 -0.40 0.22 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.62 7.64 -51.93 -0.40 0.22 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -28.85 272.97 -5.13 -33.98 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -2.65 Total: -1.05 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.22 Total: -9.63 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.66 Total: -31.06 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.38 Total: -11.78 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.17 Total: 15.51 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.49 Total: -0.09 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.85 -5.13 -33.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034161192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.858 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds