Wall clock time and date at job start Mon Mar 30 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35376 * 117.00325 * 2 1 4 4 N 1.28632 * 124.86861 * 359.95853 * 3 2 1 5 5 C 1.34888 * 117.93006 * 180.02562 * 4 3 2 6 6 C 1.39158 * 112.91913 * 0.02562 * 5 4 3 7 7 S 1.75828 * 124.86571 * 180.02562 * 3 2 1 8 8 C 1.41800 * 120.30199 * 180.02562 * 6 5 4 9 9 C 1.40837 * 120.10619 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00656 * 329.98698 * 9 8 6 11 11 C 1.39842 * 119.99593 * 149.98845 * 9 8 6 12 12 N 1.30954 * 120.00008 * 161.77114 * 11 9 8 13 13 Si 1.86795 * 120.00275 * 341.76706 * 11 9 8 14 14 H 1.48500 * 109.47009 * 95.41231 * 13 11 9 15 15 H 1.48505 * 109.47445 * 215.40995 * 13 11 9 16 16 H 1.48502 * 109.47126 * 335.41569 * 13 11 9 17 17 C 1.40663 * 119.78349 * 0.02562 * 8 6 5 18 18 C 1.37593 * 119.73116 * 359.69999 * 17 8 6 19 19 C 1.38551 * 120.83409 * 0.57690 * 18 17 8 20 20 O 1.35650 * 119.57056 * 179.71753 * 19 18 17 21 21 C 1.42910 * 116.99979 * 359.72373 * 20 19 18 22 22 H 1.08997 * 109.47749 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46737 * 300.00282 * 1 2 3 24 24 H 1.08999 * 109.46790 * 59.99483 * 1 2 3 25 25 H 0.96993 * 120.00140 * 180.02562 * 12 11 9 26 26 H 1.08003 * 120.13106 * 179.97438 * 17 8 6 27 27 H 1.07998 * 119.58257 * 180.29540 * 18 17 8 28 28 H 1.08999 * 109.46474 * 60.00245 * 21 20 19 29 29 H 1.08994 * 109.47386 * 180.02562 * 21 20 19 30 30 H 1.09003 * 109.47222 * 300.00705 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 7 1.4372 2.3406 -0.0008 5 6 2.1904 3.4596 -0.0012 6 6 3.5563 3.1935 -0.0013 7 16 3.7854 1.4467 -0.0006 8 6 4.4926 4.2584 -0.0011 9 6 5.8741 3.9844 -0.0007 10 1 6.2462 3.0851 0.4674 11 6 6.7641 4.8770 -0.6063 12 7 8.0395 4.8302 -0.3130 13 14 6.1337 6.1361 -1.8338 14 1 5.8842 7.4240 -1.1378 15 1 7.1470 6.3381 -2.9004 16 1 4.8687 5.6473 -2.4388 17 6 4.0372 5.5893 -0.0004 18 6 2.6858 5.8481 -0.0060 19 6 1.7646 4.8132 -0.0005 20 8 0.4382 5.0976 -0.0004 21 6 0.0709 6.4787 -0.0001 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 8.6567 5.4495 -0.7328 26 1 4.7454 6.4047 0.0001 27 1 2.3388 6.8708 -0.0103 28 1 0.4741 6.9620 -0.8900 29 1 -1.0156 6.5657 0.0004 30 1 0.4741 6.9618 0.8900 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034161192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:17 Heat of formation + Delta-G solvation = -40.355488 kcal Electronic energy + Delta-G solvation = -17511.160905 eV Core-core repulsion = 14591.105440 eV Total energy + Delta-G solvation = -2920.055464 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.35930 -40.17459 -38.70907 -37.20253 -35.06562 -31.79924 -30.57764 -28.68157 -28.44273 -26.43446 -24.92142 -22.93599 -22.28812 -20.03831 -19.45812 -18.40748 -17.93028 -17.29766 -17.20091 -16.66358 -16.39822 -16.07774 -15.46808 -15.08091 -14.73199 -14.64912 -14.24684 -13.67661 -13.32212 -13.08848 -12.89333 -12.71643 -12.60734 -12.19083 -11.99615 -11.95423 -11.58459 -11.49659 -10.98096 -10.72451 -10.43450 -9.21117 -8.97116 -8.73527 -6.47182 -0.26613 -0.09573 0.48044 0.93383 1.24312 1.37812 1.43728 1.57350 2.10357 2.35425 2.51895 2.69894 3.22845 3.27527 4.13974 4.33089 4.37697 4.39877 4.47682 4.49720 4.50752 4.63010 4.71848 4.78188 4.98871 5.11750 5.45004 5.56729 5.70191 5.93641 6.12878 6.38376 6.46905 6.64595 6.90718 8.10071 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.008634 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.837148 B = 3242.267736 C = 4548.175596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.285 6.285 3 C 0.267 3.733 4 N -0.532 5.532 5 C 0.100 3.900 6 C -0.252 4.252 7 S 0.116 5.884 8 C 0.103 3.897 9 C -0.468 4.468 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.832 5.832 13 Si 0.958 3.042 14 H -0.244 1.244 15 H -0.275 1.275 16 H -0.256 1.256 17 C -0.217 4.217 18 C -0.131 4.131 19 C 0.043 3.957 20 O -0.332 6.332 21 C 0.021 3.979 22 H 0.142 0.858 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.298 0.702 26 H 0.124 0.876 27 H 0.155 0.845 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 0.222 -1.355 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.190 6.190 3 C -0.055 4.055 4 N -0.265 5.265 5 C -0.017 4.017 6 C -0.370 4.370 7 S 0.367 5.633 8 C 0.096 3.904 9 C -0.497 4.497 10 H 0.081 0.919 11 C -0.163 4.163 12 N -0.457 5.457 13 Si 0.780 3.220 14 H -0.168 1.168 15 H -0.201 1.201 16 H -0.180 1.180 17 C -0.241 4.241 18 C -0.151 4.151 19 C -0.005 4.005 20 O -0.247 6.247 21 C -0.074 4.074 22 H 0.160 0.840 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.172 0.828 28 H 0.076 0.924 29 H 0.135 0.865 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.986 -0.903 -1.345 11.105 hybrid contribution -0.130 1.385 -0.251 1.414 sum -11.117 0.482 -1.596 11.241 Atomic orbital electron populations 1.23308 0.74961 1.05650 1.02471 1.86271 1.24740 1.20067 1.87952 1.25611 0.94046 0.87998 0.97868 1.66399 1.38683 0.97100 1.24327 1.17790 0.87627 0.90335 1.05962 1.23429 0.96141 0.96407 1.21038 1.84528 0.99534 0.99921 1.79337 1.16976 0.91875 0.90022 0.91504 1.19255 0.90088 1.07305 1.33053 0.91905 1.26795 0.94363 0.97958 0.97161 1.69741 1.05059 1.34648 1.36284 0.85584 0.79122 0.78955 0.78310 1.16807 1.20145 1.17974 1.20858 0.95219 0.94920 1.13072 1.20848 0.92527 0.98273 1.03496 1.18073 0.83288 0.89276 1.09877 1.85935 1.20077 1.28623 1.90074 1.23241 1.02644 0.79755 1.01726 0.84013 0.92481 0.92495 0.89077 0.85891 0.82760 0.92365 0.86476 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.62 113.37 1.20 2.01 16 2 O -0.28 -9.40 10.55 -86.67 -0.91 -10.32 16 3 C 0.27 10.77 8.32 130.71 1.09 11.86 16 4 N -0.53 -23.49 9.88 -305.98 -3.02 -26.51 16 5 C 0.10 4.72 6.87 39.80 0.27 4.99 16 6 C -0.25 -12.36 6.38 23.37 0.15 -12.21 16 7 S 0.12 5.00 23.14 -56.49 -1.31 3.69 16 8 C 0.10 5.20 5.11 -21.17 -0.11 5.09 16 9 C -0.47 -25.26 9.33 23.29 0.22 -25.04 16 10 H 0.06 3.66 8.04 -2.91 -0.02 3.64 16 11 C 0.05 2.76 5.40 85.21 0.46 3.22 16 12 N -0.83 -43.21 13.93 21.82 0.30 -42.91 16 13 Si 0.96 39.90 24.51 68.60 1.68 41.58 16 14 H -0.24 -9.16 6.71 99.48 0.67 -8.49 16 15 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 16 H -0.26 -11.15 6.87 99.48 0.68 -10.47 16 17 C -0.22 -9.83 7.15 22.71 0.16 -9.67 16 18 C -0.13 -5.23 8.95 22.19 0.20 -5.03 16 19 C 0.04 1.86 6.78 23.25 0.16 2.02 16 20 O -0.33 -12.63 10.49 -89.65 -0.94 -13.57 16 21 C 0.02 0.53 9.79 113.37 1.11 1.64 16 22 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 25 H 0.30 13.79 8.30 -92.71 -0.77 13.02 16 26 H 0.12 5.28 4.74 -2.91 -0.01 5.26 16 27 H 0.15 4.81 6.17 -2.91 -0.02 4.79 16 28 H 0.06 1.33 7.61 -2.39 -0.02 1.31 16 29 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 1.35 7.64 -2.39 -0.02 1.33 16 Total: -1.00 -63.55 272.97 1.83 -61.72 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.12 Total: 7.43 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.91 Total: -21.11 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -2.72 Total: -69.42 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.85 Total: -23.89 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.68 Total: 41.58 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.31 Total: 3.69 kcal Total: -63.55 1.83 -61.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034161192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.362 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds