Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47503 * 300.00164 * 3 2 1 6 6 H 1.48494 * 109.47297 * 60.00418 * 3 2 1 7 7 C 1.37878 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99904 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.85555 * 56.21006 * 9 7 2 11 11 C 1.54627 * 110.96772 * 292.37832 * 9 7 2 12 12 C 1.51278 * 104.13432 * 216.86761 * 11 9 7 13 13 O 1.21287 * 124.94460 * 196.51006 * 12 11 9 14 14 N 1.34423 * 110.11333 * 16.65163 * 12 11 9 15 15 C 1.39976 * 124.34730 * 180.25543 * 14 12 11 16 16 C 1.38863 * 120.06157 * 173.96798 * 15 14 12 17 17 C 1.38104 * 119.94498 * 179.97438 * 16 15 14 18 18 C 1.38379 * 120.05937 * 0.25614 * 17 16 15 19 19 Cl 1.73600 * 119.94363 * 179.71929 * 18 17 16 20 20 C 1.38383 * 120.11373 * 359.49018 * 18 17 16 21 21 C 1.38112 * 120.05407 * 0.51080 * 20 18 17 22 22 C 1.46755 * 111.30489 * 359.97438 * 14 12 11 23 23 H 0.97000 * 119.99992 * 359.97438 * 1 2 3 24 24 H 1.09005 * 110.48810 * 335.75912 * 11 9 7 25 25 H 1.08997 * 110.48710 * 98.27012 * 11 9 7 26 26 H 1.08000 * 120.02298 * 359.95696 * 16 15 14 27 27 H 1.08008 * 119.96917 * 179.97438 * 17 16 15 28 28 H 1.08004 * 119.97209 * 180.23409 * 20 18 17 29 29 H 1.08005 * 120.02724 * 179.76922 * 21 20 18 30 30 H 1.08999 * 110.24666 * 102.25089 * 22 14 12 31 31 H 1.09000 * 110.24887 * 224.16500 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5660 -2.5518 -0.8468 11 6 0.4988 -2.7038 1.3349 12 6 0.6144 -4.1886 1.6002 13 8 -0.0693 -4.8091 2.3868 14 7 1.5871 -4.7198 0.8396 15 6 1.9430 -6.0735 0.8443 16 6 2.8758 -6.5508 -0.0669 17 6 3.2256 -7.8868 -0.0598 18 6 2.6433 -8.7508 0.8509 19 17 3.0798 -10.4310 0.8525 20 6 1.7173 -8.2769 1.7635 21 6 1.3641 -6.9417 1.7605 22 6 2.2237 -3.6993 -0.0013 23 1 -0.4850 0.8400 0.0004 24 1 0.9739 -2.1319 2.1319 25 1 -0.5474 -2.4158 1.2314 26 1 3.3272 -5.8777 -0.7808 27 1 3.9508 -8.2584 -0.7686 28 1 1.2671 -8.9525 2.4758 29 1 0.6385 -6.5730 2.4706 30 1 3.1840 -3.4063 0.4229 31 1 2.3589 -4.0764 -1.0150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038524997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -19.421331 kcal Electronic energy + Delta-G solvation = -17182.035621 eV Core-core repulsion = 14260.844223 eV Total energy + Delta-G solvation = -2921.191398 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58285 -38.49268 -36.43483 -36.05615 -33.60457 -31.57005 -31.00440 -28.58418 -27.13019 -25.10504 -22.92699 -22.39959 -20.24756 -19.37092 -17.46992 -16.81249 -16.54613 -15.60189 -15.05908 -14.80309 -14.48524 -14.03907 -13.46109 -13.39859 -13.18642 -12.93056 -12.50812 -12.46121 -12.18884 -11.52485 -11.44677 -11.15142 -10.97098 -10.85965 -10.72786 -10.43313 -9.80512 -9.73105 -9.44330 -9.01335 -8.98827 -8.60948 -7.61604 -6.27914 -4.34500 1.20259 1.35764 2.20104 3.03047 3.17434 3.24121 3.27449 3.30683 3.85245 4.24386 4.76965 4.91871 5.04911 5.23822 5.35080 5.42303 5.52321 5.67768 5.90352 6.04913 6.08710 6.19777 6.23145 6.35252 6.46782 6.56539 6.70054 7.13527 7.20957 7.39280 7.46615 7.68395 8.01979 8.55019 8.68875 9.32983 10.81976 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.045261 B = 0.004144 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.488114 B = 6754.344048 C = 7225.680727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.047 3.953 10 H 0.053 0.947 11 C -0.131 4.131 12 C 0.514 3.486 13 O -0.534 6.534 14 N -0.562 5.562 15 C 0.188 3.812 16 C -0.154 4.154 17 C -0.081 4.081 18 C -0.074 4.074 19 Cl -0.086 7.086 20 C -0.080 4.080 21 C -0.156 4.156 22 C 0.097 3.903 23 H 0.265 0.735 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.163 0.837 30 H 0.075 0.925 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 -12.405 -0.092 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.028 3.972 10 H 0.071 0.929 11 C -0.171 4.171 12 C 0.307 3.693 13 O -0.412 6.412 14 N -0.283 5.283 15 C 0.092 3.908 16 C -0.176 4.176 17 C -0.100 4.100 18 C -0.102 4.102 19 Cl -0.057 7.057 20 C -0.100 4.100 21 C -0.176 4.176 22 C -0.024 4.024 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.180 0.820 30 H 0.093 0.907 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.803 -12.684 0.320 13.567 hybrid contribution 0.514 0.746 -0.085 0.910 sum 5.317 -11.938 0.235 13.070 Atomic orbital electron populations 1.69944 1.06033 1.27234 1.48762 1.24990 0.94898 0.99453 0.94280 0.86447 0.80094 0.83193 0.77792 1.19572 1.20840 1.20839 1.20960 0.93029 0.89300 1.52857 0.91670 1.19689 0.92717 0.91394 0.93351 0.92932 1.22547 1.04659 0.87456 1.02452 1.22185 0.77077 0.92245 0.77796 1.90500 1.46265 1.68176 1.36279 1.46324 1.35119 1.05609 1.41270 1.18079 0.94535 0.83613 0.94608 1.20789 1.00601 0.95560 1.00607 1.20752 0.99317 0.92142 0.97804 1.20776 1.02701 0.85004 1.01720 1.98335 1.92532 1.16577 1.98288 1.20904 0.96046 0.95410 0.97597 1.21683 1.02980 0.92243 1.00711 1.22739 0.98449 0.87995 0.93243 0.92522 0.88227 0.88319 0.84607 0.84931 0.84995 0.81951 0.90652 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.04 12.84 55.43 0.71 -22.33 16 2 C 0.07 1.68 5.37 -17.82 -0.10 1.58 16 3 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -12.48 8.39 -34.44 -0.29 -12.77 16 8 H 0.07 1.51 7.60 -52.48 -0.40 1.11 16 9 C 0.05 1.03 2.96 -90.14 -0.27 0.76 16 10 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 11 C -0.13 -2.81 5.81 -26.74 -0.16 -2.96 16 12 C 0.51 10.54 7.92 -10.86 -0.09 10.46 16 13 O -0.53 -11.72 14.82 5.55 0.08 -11.64 16 14 N -0.56 -10.29 3.14 -112.27 -0.35 -10.65 16 15 C 0.19 3.13 6.60 -83.68 -0.55 2.58 16 16 C -0.15 -2.15 9.42 -39.40 -0.37 -2.52 16 17 C -0.08 -1.01 9.82 -39.58 -0.39 -1.40 16 18 C -0.07 -0.97 6.32 -39.48 -0.25 -1.22 16 19 Cl -0.09 -0.99 28.95 -51.86 -1.50 -2.49 16 20 C -0.08 -1.11 9.82 -39.57 -0.39 -1.49 16 21 C -0.16 -2.53 9.29 -39.40 -0.37 -2.89 16 22 C 0.10 1.72 6.06 -3.13 -0.02 1.70 16 23 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 24 H 0.10 2.19 7.89 -51.93 -0.41 1.78 16 25 H 0.10 2.25 8.14 -51.93 -0.42 1.82 16 26 H 0.14 1.68 6.74 -52.49 -0.35 1.32 16 27 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.16 2.91 5.26 -52.48 -0.28 2.64 16 30 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 31 H 0.07 1.10 7.23 -51.93 -0.38 0.72 16 LS Contribution 281.56 15.07 4.24 4.24 Total: -1.00 -25.98 281.56 -8.11 -34.09 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.04 Total: 2.62 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.23 Total: -8.19 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.36 Total: -32.97 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.98 -8.11 -34.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038524997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.668 kcal (2) G-P(sol) polarization free energy of solvation -25.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds