Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47503 * 300.00164 * 3 2 1 6 6 H 1.48494 * 109.47297 * 60.00418 * 3 2 1 7 7 C 1.37878 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99904 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.85555 * 56.21006 * 9 7 2 11 11 C 1.54627 * 110.96772 * 292.37832 * 9 7 2 12 12 C 1.51278 * 104.13432 * 216.86761 * 11 9 7 13 13 O 1.21287 * 124.94460 * 196.51006 * 12 11 9 14 14 N 1.34423 * 110.11333 * 16.65163 * 12 11 9 15 15 C 1.39976 * 124.34730 * 180.25543 * 14 12 11 16 16 C 1.38863 * 120.06157 * 173.96798 * 15 14 12 17 17 C 1.38104 * 119.94498 * 179.97438 * 16 15 14 18 18 C 1.38379 * 120.05937 * 0.25614 * 17 16 15 19 19 Cl 1.73600 * 119.94363 * 179.71929 * 18 17 16 20 20 C 1.38383 * 120.11373 * 359.49018 * 18 17 16 21 21 C 1.38112 * 120.05407 * 0.51080 * 20 18 17 22 22 C 1.46755 * 111.30489 * 359.97438 * 14 12 11 23 23 H 0.97000 * 119.99992 * 359.97438 * 1 2 3 24 24 H 1.09005 * 110.48810 * 335.75912 * 11 9 7 25 25 H 1.08997 * 110.48710 * 98.27012 * 11 9 7 26 26 H 1.08000 * 120.02298 * 359.95696 * 16 15 14 27 27 H 1.08008 * 119.96917 * 179.97438 * 17 16 15 28 28 H 1.08004 * 119.97209 * 180.23409 * 20 18 17 29 29 H 1.08005 * 120.02724 * 179.76922 * 21 20 18 30 30 H 1.08999 * 110.24666 * 102.25089 * 22 14 12 31 31 H 1.09000 * 110.24887 * 224.16500 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5660 -2.5518 -0.8468 11 6 0.4988 -2.7038 1.3349 12 6 0.6144 -4.1886 1.6002 13 8 -0.0693 -4.8091 2.3868 14 7 1.5871 -4.7198 0.8396 15 6 1.9430 -6.0735 0.8443 16 6 2.8758 -6.5508 -0.0669 17 6 3.2256 -7.8868 -0.0598 18 6 2.6433 -8.7508 0.8509 19 17 3.0798 -10.4310 0.8525 20 6 1.7173 -8.2769 1.7635 21 6 1.3641 -6.9417 1.7605 22 6 2.2237 -3.6993 -0.0013 23 1 -0.4850 0.8400 0.0004 24 1 0.9739 -2.1319 2.1319 25 1 -0.5474 -2.4158 1.2314 26 1 3.3272 -5.8777 -0.7808 27 1 3.9508 -8.2584 -0.7686 28 1 1.2671 -8.9525 2.4758 29 1 0.6385 -6.5730 2.4706 30 1 3.1840 -3.4063 0.4229 31 1 2.3589 -4.0764 -1.0150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038524997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -31.824879 kcal Electronic energy + Delta-G solvation = -17182.573479 eV Core-core repulsion = 14260.844223 eV Total energy + Delta-G solvation = -2921.729256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02873 -39.72765 -37.79762 -37.33361 -35.25205 -33.17301 -32.11535 -29.98626 -28.73723 -26.79656 -24.14776 -23.70944 -21.84452 -20.78110 -18.94688 -18.41886 -17.83493 -17.02947 -16.63418 -16.37454 -15.81994 -15.36015 -14.77903 -14.66621 -14.57784 -14.42156 -14.17317 -13.91919 -13.45146 -12.92124 -12.75679 -12.66065 -12.53147 -12.48331 -12.10952 -11.83720 -11.44959 -11.31655 -10.90366 -10.72528 -10.41189 -10.09823 -8.88658 -8.16857 -6.27938 0.02178 0.26505 1.17257 1.46438 1.50343 1.51106 1.60283 1.85389 2.45048 2.67716 3.16646 3.49083 3.83418 3.92948 4.04085 4.19412 4.31070 4.35830 4.44397 4.66444 4.76516 4.84773 4.94626 5.02153 5.17592 5.24187 5.36474 5.45489 5.59150 5.79635 5.88817 6.01938 6.20367 6.81110 7.00575 7.42509 8.93209 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.045261 B = 0.004144 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.488114 B = 6754.344048 C = 7225.680727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.042 3.958 10 H 0.030 0.970 11 C -0.123 4.123 12 C 0.513 3.487 13 O -0.557 6.557 14 N -0.557 5.557 15 C 0.157 3.843 16 C -0.145 4.145 17 C -0.073 4.073 18 C -0.071 4.071 19 Cl -0.067 7.067 20 C -0.080 4.080 21 C -0.171 4.171 22 C 0.108 3.892 23 H 0.263 0.737 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 -13.887 -1.008 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.023 3.977 10 H 0.048 0.952 11 C -0.164 4.164 12 C 0.305 3.695 13 O -0.437 6.437 14 N -0.278 5.278 15 C 0.062 3.938 16 C -0.166 4.166 17 C -0.092 4.092 18 C -0.099 4.099 19 Cl -0.038 7.038 20 C -0.099 4.099 21 C -0.191 4.191 22 C -0.012 4.012 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.174 0.826 27 H 0.182 0.818 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.130 -14.202 -0.612 15.903 hybrid contribution -0.161 1.040 0.187 1.069 sum 6.969 -13.161 -0.425 14.898 Atomic orbital electron populations 1.70067 1.07429 1.27706 1.50349 1.25732 0.95509 1.02568 0.94331 0.85514 0.79439 0.79533 0.77225 1.18389 1.21012 1.21307 1.21328 0.93582 0.90100 1.51508 0.90798 1.19590 0.93181 0.92666 0.92292 0.95204 1.22318 1.03162 0.88610 1.02275 1.21878 0.77770 0.91683 0.78174 1.90492 1.47381 1.68370 1.37426 1.46150 1.34384 1.06669 1.40596 1.18316 0.96487 0.82539 0.96411 1.21019 0.99274 0.96504 0.99797 1.21106 0.99091 0.91344 0.97685 1.20938 1.01801 0.86097 1.01035 1.98350 1.92263 1.15040 1.98195 1.21033 0.96158 0.94589 0.98140 1.21550 1.03269 0.93467 1.00851 1.22613 0.97379 0.86452 0.94796 0.92785 0.89227 0.90614 0.82606 0.81793 0.83380 0.84267 0.89532 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.03 12.84 21.45 0.28 -48.75 16 2 C 0.02 0.94 5.37 84.66 0.45 1.40 16 3 Si 0.96 39.61 29.54 68.60 2.03 41.63 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -24.99 8.39 25.60 0.21 -24.77 16 8 H 0.07 3.31 7.60 -2.91 -0.02 3.29 16 9 C 0.04 1.82 2.96 -10.48 -0.03 1.79 16 10 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 11 C -0.12 -5.48 5.81 30.59 0.18 -5.31 16 12 C 0.51 21.57 7.92 87.90 0.70 22.27 16 13 O -0.56 -25.34 14.82 -3.05 -0.05 -25.38 16 14 N -0.56 -20.08 3.14 -627.69 -1.97 -22.05 16 15 C 0.16 5.01 6.60 38.14 0.25 5.27 16 16 C -0.15 -3.59 9.42 22.39 0.21 -3.38 16 17 C -0.07 -1.55 9.82 22.27 0.22 -1.33 16 18 C -0.07 -1.64 6.32 22.34 0.14 -1.49 16 19 Cl -0.07 -1.33 28.95 -2.72 -0.08 -1.41 16 20 C -0.08 -2.06 9.82 22.27 0.22 -1.85 16 21 C -0.17 -5.46 9.29 22.39 0.21 -5.26 16 22 C 0.11 3.69 6.06 86.83 0.53 4.22 16 23 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 24 H 0.09 4.10 7.89 -2.38 -0.02 4.08 16 25 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 26 H 0.16 3.19 6.74 -2.91 -0.02 3.17 16 27 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 28 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 29 H 0.14 5.14 5.26 -2.91 -0.02 5.13 16 30 H 0.09 2.79 7.74 -2.39 -0.02 2.77 16 31 H 0.10 2.78 7.23 -2.39 -0.02 2.77 16 Total: -1.00 -56.21 281.56 4.65 -51.56 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.15 Total: 12.85 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 3.29 Total: -8.44 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -1.69 Total: -70.80 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -56.21 4.65 -51.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038524997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.738 kcal (2) G-P(sol) polarization free energy of solvation -56.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds