Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00428 * 2 1 4 4 H 1.48498 * 109.47091 * 89.99864 * 3 2 1 5 5 H 1.48495 * 109.47038 * 209.99960 * 3 2 1 6 6 H 1.48497 * 109.46630 * 329.99967 * 3 2 1 7 7 C 1.37881 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00118 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00048 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.85462 * 303.78714 * 9 7 2 11 11 C 1.54624 * 110.96923 * 67.61995 * 9 7 2 12 12 C 1.51282 * 104.19428 * 142.91809 * 11 9 7 13 13 O 1.21287 * 124.94365 * 163.75210 * 12 11 9 14 14 N 1.34423 * 110.11390 * 343.74907 * 12 11 9 15 15 C 1.39971 * 124.34748 * 179.57181 * 14 12 11 16 16 C 1.38867 * 120.05897 * 353.95898 * 15 14 12 17 17 C 1.38114 * 119.94304 * 179.79105 * 16 15 14 18 18 C 1.38384 * 120.05499 * 0.46308 * 17 16 15 19 19 Cl 1.73599 * 119.94137 * 179.76567 * 18 17 16 20 20 C 1.38389 * 120.11593 * 359.79374 * 18 17 16 21 21 C 1.38101 * 120.05538 * 359.97275 * 20 18 17 22 22 C 1.46762 * 111.30115 * 359.58895 * 14 12 11 23 23 H 0.96999 * 119.99214 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.49113 * 261.59367 * 11 9 7 25 25 H 1.09005 * 110.48523 * 24.24206 * 11 9 7 26 26 H 1.07996 * 120.02850 * 0.02562 * 16 15 14 27 27 H 1.08003 * 119.97184 * 180.25508 * 17 16 15 28 28 H 1.08000 * 119.96917 * 180.02562 * 20 18 17 29 29 H 1.08007 * 120.02697 * 180.02562 * 21 20 18 30 30 H 1.08990 * 110.25026 * 258.01454 * 22 14 12 31 31 H 1.09000 * 110.31623 * 136.05651 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8999 -0.6279 -0.8455 11 6 4.0644 -0.6442 1.3363 12 6 5.2896 -1.4894 1.6068 13 8 6.1654 -1.2101 2.3980 14 7 5.2663 -2.5951 0.8426 15 6 6.2608 -3.5799 0.8481 16 6 7.4223 -3.3915 1.5855 17 6 8.4003 -4.3667 1.5927 18 6 8.2276 -5.5267 0.8581 19 17 9.4614 -6.7480 0.8644 20 6 7.0734 -5.7147 0.1181 21 6 6.0904 -4.7447 0.1115 22 6 4.0642 -2.6367 0.0016 23 1 -0.4849 0.8401 0.0004 24 1 4.3404 0.4051 1.2316 25 1 3.3312 -0.7692 2.1332 26 1 7.5591 -2.4847 2.1560 27 1 9.3020 -4.2224 2.1694 28 1 6.9410 -6.6211 -0.4539 29 1 5.1896 -4.8921 -0.4659 30 1 3.3304 -3.3217 0.4260 31 1 4.3222 -2.9421 -1.0124 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038524998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -12.991392 kcal Electronic energy + Delta-G solvation = -17257.553461 eV Core-core repulsion = 14336.640886 eV Total energy + Delta-G solvation = -2920.912575 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76913 -38.62609 -36.53655 -36.23661 -33.65416 -31.87348 -31.09058 -28.94240 -27.36168 -25.21108 -23.07246 -22.37118 -20.20064 -19.59560 -17.63930 -17.12854 -16.70155 -15.77706 -15.37830 -14.89780 -14.30940 -14.11606 -13.59592 -13.52640 -13.34117 -13.21996 -12.87087 -12.72049 -12.36640 -11.63141 -11.55676 -11.18592 -11.07195 -10.93216 -10.77792 -10.37818 -10.09845 -9.72287 -9.57902 -9.16930 -9.08242 -8.78426 -7.73789 -6.31368 -4.35719 1.10706 1.28059 2.13719 2.83563 3.07710 3.14774 3.22731 3.26220 3.75125 4.20586 4.64245 4.84620 4.94118 5.02839 5.22845 5.24582 5.40892 5.53855 5.63754 5.89862 5.96517 5.98853 6.08271 6.17914 6.26637 6.29996 6.51249 6.57089 6.97135 7.08000 7.25557 7.42155 8.20998 8.34878 8.69502 9.27879 10.80437 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.004427 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.659920 B = 6323.993800 C = 6764.063577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.011 3.989 10 H 0.053 0.947 11 C -0.163 4.163 12 C 0.521 3.479 13 O -0.529 6.529 14 N -0.561 5.561 15 C 0.186 3.814 16 C -0.154 4.154 17 C -0.081 4.081 18 C -0.072 4.072 19 Cl -0.084 7.084 20 C -0.081 4.081 21 C -0.151 4.151 22 C 0.107 3.893 23 H 0.268 0.732 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.163 0.837 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.038 -8.712 -0.133 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.697 3.303 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.213 1.213 7 C -0.558 4.558 8 H 0.100 0.900 9 C -0.009 4.009 10 H 0.071 0.929 11 C -0.203 4.203 12 C 0.313 3.687 13 O -0.407 6.407 14 N -0.282 5.282 15 C 0.089 3.911 16 C -0.174 4.174 17 C -0.100 4.100 18 C -0.099 4.099 19 Cl -0.055 7.055 20 C -0.100 4.100 21 C -0.172 4.172 22 C -0.014 4.014 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.132 0.868 26 H 0.180 0.820 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.376 -8.511 0.279 15.856 hybrid contribution 0.399 0.756 -0.022 0.855 sum 13.775 -7.755 0.257 15.810 Atomic orbital electron populations 1.69868 1.06283 1.27475 1.48860 1.24938 0.94676 0.99011 0.93772 0.87011 0.80364 0.83812 0.79066 1.19695 1.18748 1.21258 1.20760 0.87058 0.95089 1.52886 0.89969 1.20207 0.97996 0.90142 0.92508 0.92853 1.23041 0.94513 0.99020 1.03708 1.21682 0.87752 0.81158 0.78122 1.90527 1.40629 1.73623 1.35916 1.46240 1.21313 1.19894 1.40764 1.18031 0.88492 0.88729 0.95805 1.21657 0.92180 1.01802 1.01807 1.20908 0.99427 0.91665 0.97995 1.20801 0.92330 0.92422 1.04388 1.98340 1.54177 1.55084 1.97927 1.20774 0.91716 0.99298 0.98216 1.20800 1.00778 0.92873 1.02744 1.22544 0.83527 1.01641 0.93668 0.92165 0.89598 0.86777 0.82004 0.84922 0.84794 0.84466 0.89900 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 13.96 55.43 0.77 -24.03 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.87 19.45 25.11 -169.99 -4.27 15.18 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.26 -5.58 6.44 56.52 0.36 -5.22 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -12.66 8.97 -34.44 -0.31 -12.97 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.01 0.22 2.51 -90.14 -0.23 -0.01 16 10 H 0.05 1.08 6.99 -51.93 -0.36 0.72 16 11 C -0.16 -3.19 5.06 -26.74 -0.14 -3.33 16 12 C 0.52 9.99 7.92 -10.86 -0.09 9.90 16 13 O -0.53 -10.90 14.82 5.55 0.08 -10.82 16 14 N -0.56 -9.67 3.14 -112.26 -0.35 -10.02 16 15 C 0.19 2.91 6.60 -83.68 -0.55 2.36 16 16 C -0.15 -2.36 9.28 -39.39 -0.37 -2.73 16 17 C -0.08 -1.05 9.82 -39.57 -0.39 -1.44 16 18 C -0.07 -0.89 6.32 -39.47 -0.25 -1.14 16 19 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.43 16 20 C -0.08 -0.96 9.82 -39.58 -0.39 -1.35 16 21 C -0.15 -1.99 9.40 -39.40 -0.37 -2.36 16 22 C 0.11 1.81 5.82 -3.12 -0.02 1.79 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.09 1.67 6.31 -51.93 -0.33 1.34 16 25 H 0.11 2.28 7.89 -51.93 -0.41 1.87 16 26 H 0.16 2.74 5.27 -52.49 -0.28 2.46 16 27 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.59 7.02 -52.48 -0.37 1.23 16 30 H 0.08 1.39 7.74 -51.93 -0.40 0.98 16 31 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -27.18 274.81 -7.29 -34.47 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.98 Total: 2.81 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.19 Total: -9.31 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.42 Total: -34.05 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.27 Total: 15.18 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.18 -7.29 -34.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038524998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.480 kcal (2) G-P(sol) polarization free energy of solvation -27.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds