Wall clock time and date at job start Mon Mar 30 2020 06:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00428 * 2 1 4 4 H 1.48498 * 109.47091 * 89.99864 * 3 2 1 5 5 H 1.48495 * 109.47038 * 209.99960 * 3 2 1 6 6 H 1.48497 * 109.46630 * 329.99967 * 3 2 1 7 7 C 1.37881 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00118 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00048 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.85462 * 303.78714 * 9 7 2 11 11 C 1.54624 * 110.96923 * 67.61995 * 9 7 2 12 12 C 1.51282 * 104.19428 * 142.91809 * 11 9 7 13 13 O 1.21287 * 124.94365 * 163.75210 * 12 11 9 14 14 N 1.34423 * 110.11390 * 343.74907 * 12 11 9 15 15 C 1.39971 * 124.34748 * 179.57181 * 14 12 11 16 16 C 1.38867 * 120.05897 * 353.95898 * 15 14 12 17 17 C 1.38114 * 119.94304 * 179.79105 * 16 15 14 18 18 C 1.38384 * 120.05499 * 0.46308 * 17 16 15 19 19 Cl 1.73599 * 119.94137 * 179.76567 * 18 17 16 20 20 C 1.38389 * 120.11593 * 359.79374 * 18 17 16 21 21 C 1.38101 * 120.05538 * 359.97275 * 20 18 17 22 22 C 1.46762 * 111.30115 * 359.58895 * 14 12 11 23 23 H 0.96999 * 119.99214 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.49113 * 261.59367 * 11 9 7 25 25 H 1.09005 * 110.48523 * 24.24206 * 11 9 7 26 26 H 1.07996 * 120.02850 * 0.02562 * 16 15 14 27 27 H 1.08003 * 119.97184 * 180.25508 * 17 16 15 28 28 H 1.08000 * 119.96917 * 180.02562 * 20 18 17 29 29 H 1.08007 * 120.02697 * 180.02562 * 21 20 18 30 30 H 1.08990 * 110.25026 * 258.01454 * 22 14 12 31 31 H 1.09000 * 110.31623 * 136.05651 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8999 -0.6279 -0.8455 11 6 4.0644 -0.6442 1.3363 12 6 5.2896 -1.4894 1.6068 13 8 6.1654 -1.2101 2.3980 14 7 5.2663 -2.5951 0.8426 15 6 6.2608 -3.5799 0.8481 16 6 7.4223 -3.3915 1.5855 17 6 8.4003 -4.3667 1.5927 18 6 8.2276 -5.5267 0.8581 19 17 9.4614 -6.7480 0.8644 20 6 7.0734 -5.7147 0.1181 21 6 6.0904 -4.7447 0.1115 22 6 4.0642 -2.6367 0.0016 23 1 -0.4849 0.8401 0.0004 24 1 4.3404 0.4051 1.2316 25 1 3.3312 -0.7692 2.1332 26 1 7.5591 -2.4847 2.1560 27 1 9.3020 -4.2224 2.1694 28 1 6.9410 -6.6211 -0.4539 29 1 5.1896 -4.8921 -0.4659 30 1 3.3304 -3.3217 0.4260 31 1 4.3222 -2.9421 -1.0124 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038524998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:02 Heat of formation + Delta-G solvation = -27.758608 kcal Electronic energy + Delta-G solvation = -17258.193815 eV Core-core repulsion = 14336.640886 eV Total energy + Delta-G solvation = -2921.552929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12054 -39.77226 -37.88678 -37.36431 -35.26061 -33.54351 -32.12965 -30.26390 -28.85007 -26.85648 -24.21851 -23.61353 -21.75035 -20.92218 -19.18837 -18.64181 -17.85626 -17.21049 -16.70893 -16.36876 -15.80538 -15.36604 -14.89999 -14.82763 -14.70367 -14.56262 -14.45405 -14.07414 -13.52421 -12.94348 -12.77740 -12.67997 -12.56317 -12.50724 -12.00258 -11.85812 -11.68573 -11.38726 -10.94268 -10.83297 -10.61634 -10.10791 -8.92152 -8.30035 -6.36715 -0.00218 0.25471 1.16523 1.37379 1.41307 1.42431 1.48441 1.78490 2.33837 2.65846 3.03301 3.34094 3.73048 3.88019 3.92763 4.13428 4.19802 4.24986 4.33312 4.55014 4.65614 4.68927 4.90143 4.98731 5.01860 5.12196 5.23191 5.33650 5.43337 5.53989 5.86087 5.96836 6.24799 6.71266 6.92223 7.30220 8.85093 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.004427 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.659920 B = 6323.993800 C = 6764.063577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.028 3.972 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.241 1.241 6 H -0.292 1.292 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.008 3.992 10 H 0.060 0.940 11 C -0.161 4.161 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.556 5.556 15 C 0.157 3.843 16 C -0.167 4.167 17 C -0.081 4.081 18 C -0.070 4.070 19 Cl -0.068 7.068 20 C -0.075 4.075 21 C -0.144 4.144 22 C 0.115 3.885 23 H 0.268 0.732 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.083 0.917 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.066 -9.967 -0.887 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.165 1.165 6 H -0.219 1.219 7 C -0.549 4.549 8 H 0.072 0.928 9 C -0.011 4.011 10 H 0.078 0.922 11 C -0.201 4.201 12 C 0.311 3.689 13 O -0.429 6.429 14 N -0.277 5.277 15 C 0.062 3.938 16 C -0.188 4.188 17 C -0.100 4.100 18 C -0.097 4.097 19 Cl -0.039 7.039 20 C -0.094 4.094 21 C -0.165 4.165 22 C -0.005 4.005 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.181 0.819 29 H 0.173 0.827 30 H 0.101 0.899 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.442 -9.807 -0.486 18.299 hybrid contribution -0.162 0.958 0.212 0.995 sum 15.279 -8.849 -0.275 17.659 Atomic orbital electron populations 1.70000 1.08082 1.28207 1.51546 1.25672 0.95174 1.02406 0.93885 0.86168 0.79940 0.79809 0.79413 1.19161 1.16489 1.21858 1.20985 0.89315 0.93771 1.50857 0.92751 1.20105 0.95274 0.92788 0.92971 0.92198 1.22900 0.94760 0.99477 1.02939 1.21493 0.87288 0.81770 0.78378 1.90525 1.41161 1.74323 1.36926 1.46109 1.21625 1.19791 1.40221 1.18259 0.88429 0.89445 0.97642 1.21545 0.93057 1.01893 1.02279 1.21045 0.99437 0.91398 0.98092 1.20958 0.92827 0.92384 1.03580 1.98354 1.53506 1.54215 1.97821 1.21104 0.90832 0.99798 0.97628 1.21016 1.01646 0.91910 1.01885 1.22428 0.83510 0.99381 0.95220 0.92317 0.89300 0.87687 0.83980 0.83316 0.81945 0.82715 0.89881 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.70 13.96 21.45 0.30 -53.40 16 2 C 0.03 1.45 5.46 84.66 0.46 1.91 16 3 Si 0.92 39.74 25.11 68.60 1.72 41.47 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.24 -9.48 6.44 99.48 0.64 -8.84 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.51 -24.98 8.97 25.60 0.23 -24.75 16 8 H 0.05 2.90 7.85 -2.91 -0.02 2.88 16 9 C 0.01 0.31 2.51 -10.48 -0.03 0.29 16 10 H 0.06 2.30 6.99 -2.38 -0.02 2.29 16 11 C -0.16 -6.18 5.06 30.59 0.15 -6.02 16 12 C 0.52 19.56 7.92 87.90 0.70 20.26 16 13 O -0.55 -22.59 14.82 -3.05 -0.05 -22.64 16 14 N -0.56 -18.39 3.14 -627.67 -1.97 -20.36 16 15 C 0.16 4.64 6.60 38.14 0.25 4.89 16 16 C -0.17 -4.95 9.28 22.39 0.21 -4.74 16 17 C -0.08 -1.94 9.82 22.28 0.22 -1.72 16 18 C -0.07 -1.52 6.32 22.34 0.14 -1.38 16 19 Cl -0.07 -1.29 28.95 -2.72 -0.08 -1.37 16 20 C -0.07 -1.50 9.82 22.27 0.22 -1.29 16 21 C -0.14 -3.35 9.40 22.39 0.21 -3.14 16 22 C 0.12 3.68 5.82 86.83 0.51 4.19 16 23 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 24 H 0.09 3.34 6.31 -2.39 -0.02 3.32 16 25 H 0.11 4.21 7.89 -2.38 -0.02 4.19 16 26 H 0.14 4.81 5.27 -2.91 -0.02 4.79 16 27 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.16 3.02 7.02 -2.91 -0.02 3.00 16 30 H 0.08 2.67 7.74 -2.39 -0.02 2.65 16 31 H 0.10 2.74 7.70 -2.39 -0.02 2.72 16 Total: -1.00 -58.68 274.81 4.29 -54.39 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.09 Total: 13.42 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.27 Total: -11.51 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.67 Total: -73.76 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.72 Total: 41.47 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -58.68 4.29 -54.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038524998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.628 kcal (2) G-P(sol) polarization free energy of solvation -58.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds