Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34895 * 118.76612 * 2 1 4 4 C 1.41612 * 120.10716 * 179.97438 * 3 2 1 5 5 O 1.22011 * 121.07168 * 180.02562 * 4 3 2 6 6 C 1.47388 * 117.85117 * 359.97438 * 4 3 2 7 7 C 1.39487 * 121.38913 * 180.02562 * 6 4 3 8 8 C 1.37987 * 119.59813 * 179.97438 * 7 6 4 9 9 F 1.35090 * 119.82413 * 179.97438 * 8 7 6 10 10 C 1.38963 * 120.35421 * 0.02562 * 8 7 6 11 11 C 1.37997 * 120.64348 * 359.97438 * 10 8 7 12 12 F 1.35102 * 120.08066 * 180.02562 * 11 10 8 13 13 C 1.39342 * 119.84037 * 0.02562 * 11 10 8 14 14 N 1.35884 * 118.76771 * 179.72792 * 2 1 3 15 15 C 1.36694 * 119.20721 * 0.02562 * 14 2 1 16 16 H 1.07995 * 119.99536 * 232.94462 * 15 14 2 17 17 C 1.39131 * 120.00374 * 52.94197 * 15 14 2 18 18 N 1.31242 * 119.99804 * 18.36503 * 17 15 14 19 19 Si 1.86794 * 120.00082 * 198.36705 * 17 15 14 20 20 H 1.48503 * 109.47317 * 60.00256 * 19 17 15 21 21 H 1.48497 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47365 * 300.00243 * 19 17 15 23 23 H 1.08997 * 109.47081 * 93.78841 * 1 2 3 24 24 H 1.08999 * 109.47273 * 333.78944 * 1 2 3 25 25 H 1.08997 * 109.47169 * 213.78948 * 1 2 3 26 26 H 1.07992 * 119.94151 * 359.95056 * 3 2 1 27 27 H 1.07999 * 120.20028 * 359.96000 * 7 6 4 28 28 H 1.07996 * 119.67753 * 179.97438 * 10 8 7 29 29 H 0.96997 * 119.99991 * 174.89559 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1561 1.1825 0.0000 4 6 3.5719 1.2156 0.0005 5 8 4.1769 2.2751 0.0010 6 6 4.2907 -0.0711 0.0017 7 6 5.6846 -0.1245 0.0028 8 6 6.3196 -1.3496 0.0044 9 9 7.6693 -1.4067 0.0050 10 6 5.5782 -2.5249 0.0043 11 6 4.1988 -2.4863 0.0032 12 9 3.4892 -3.6360 0.0037 13 6 3.5395 -1.2588 0.0016 14 7 2.1609 -1.1911 0.0057 15 6 1.4360 -2.3500 0.0106 16 1 1.6273 -3.1032 0.7605 17 6 0.4519 -2.5592 -0.9503 18 7 0.4501 -1.8480 -2.0533 19 14 -0.8668 -3.8523 -0.6706 20 1 -1.6308 -3.5222 0.5593 21 1 -1.7888 -3.8788 -1.8344 22 1 -0.2289 -5.1842 -0.5146 23 1 -0.3633 -0.0679 -1.0254 24 1 -0.3634 0.9220 0.4539 25 1 -0.3633 -0.8541 0.5715 26 1 1.5952 2.1053 -0.0008 27 1 6.2632 0.7874 0.0022 28 1 6.0865 -3.4778 0.0052 29 1 -0.1901 -2.0434 -2.7553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040175567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = -80.543603 kcal Electronic energy + Delta-G solvation = -20047.469101 eV Core-core repulsion = 16571.830563 eV Total energy + Delta-G solvation = -3475.638538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.45525 -48.23552 -40.28845 -37.32681 -36.74475 -33.18221 -31.93180 -30.53573 -29.15041 -26.98456 -25.27758 -23.40954 -22.16917 -20.95058 -18.86446 -17.94930 -17.49098 -16.29913 -16.05183 -15.51784 -15.31063 -15.00808 -14.69514 -14.60890 -14.06432 -13.93699 -13.85725 -13.05732 -12.79325 -12.44642 -12.21009 -12.12861 -12.00076 -11.69857 -11.57900 -11.22801 -11.04734 -10.91755 -10.64797 -10.09487 -9.13178 -8.62539 -8.53077 -8.23109 -7.13990 -6.77060 -4.81202 1.17417 1.38163 2.59787 2.89254 2.91998 2.93525 3.49007 3.59077 4.04544 4.28366 4.42181 4.70872 4.90880 4.96261 5.29220 5.39866 5.65102 5.83138 6.07124 6.15706 6.32856 6.36809 6.41303 6.47895 6.60209 6.74749 6.89447 7.05299 7.19071 7.24586 7.63420 8.09198 8.43080 8.72998 8.93089 10.00273 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.009001 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.504490 B = 3110.043341 C = 4224.271613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.237 3.763 3 C -0.372 4.372 4 C 0.412 3.588 5 O -0.550 6.550 6 C -0.171 4.171 7 C -0.076 4.076 8 C 0.053 3.947 9 F -0.144 7.144 10 C -0.154 4.154 11 C 0.103 3.897 12 F -0.113 7.113 13 C 0.149 3.851 14 N -0.295 5.295 15 C -0.385 4.385 16 H 0.116 0.884 17 C 0.066 3.934 18 N -0.830 5.830 19 Si 0.927 3.073 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.263 1.263 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 -3.225 2.637 4.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 C -0.397 4.397 4 C 0.306 3.694 5 O -0.440 6.440 6 C -0.176 4.176 7 C -0.096 4.096 8 C 0.033 3.967 9 F -0.123 7.123 10 C -0.175 4.175 11 C 0.081 3.919 12 F -0.091 7.091 13 C 0.041 3.959 14 N 0.034 4.966 15 C -0.512 4.512 16 H 0.133 0.867 17 C -0.147 4.147 18 N -0.460 5.460 19 Si 0.751 3.249 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.188 1.188 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.401 -2.845 2.454 3.779 hybrid contribution -0.461 -1.030 -0.247 1.155 sum -0.060 -3.875 2.207 4.460 Atomic orbital electron populations 1.21146 0.89618 1.01904 1.04537 1.20400 0.94759 0.84808 0.87907 1.21379 0.95208 0.96677 1.26394 1.18091 0.88945 0.86583 0.75740 1.90608 1.71825 1.32226 1.49307 1.20152 0.93210 0.94650 1.09587 1.20900 0.93610 0.96814 0.98256 1.16899 0.76728 0.93353 1.09744 1.91443 1.28836 1.97258 1.94723 1.20781 0.92078 0.98865 1.05768 1.16571 0.88095 0.80967 1.06249 1.91547 1.77739 1.46171 1.93640 1.18527 0.85545 0.92373 0.99451 1.39248 1.00957 1.05998 1.50434 1.19917 1.17153 0.96998 1.17091 0.86693 1.25711 0.98228 0.97370 0.93389 1.69861 1.34180 1.37817 1.04160 0.85957 0.79577 0.80501 0.78894 1.18613 1.20090 1.18788 0.88533 0.92097 0.90157 0.84952 0.83797 0.83918 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.20 36.00 0.30 -1.89 15 2 C 0.24 5.20 6.10 -81.99 -0.50 4.70 15 3 C -0.37 -8.24 9.51 -39.48 -0.38 -8.62 15 4 C 0.41 9.71 6.96 -34.57 -0.24 9.47 15 5 O -0.55 -13.92 17.35 4.91 0.09 -13.83 15 6 C -0.17 -3.77 5.89 -104.84 -0.62 -4.39 15 7 C -0.08 -1.50 9.63 -39.21 -0.38 -1.88 15 8 C 0.05 0.96 7.29 -39.40 -0.29 0.67 15 9 F -0.14 -2.43 17.26 2.25 0.04 -2.40 15 10 C -0.15 -2.71 9.97 -39.40 -0.39 -3.10 15 11 C 0.10 2.10 7.16 -39.26 -0.28 1.81 15 12 F -0.11 -2.33 13.91 2.25 0.03 -2.30 15 13 C 0.15 3.33 6.50 -83.80 -0.54 2.79 15 14 N -0.29 -6.78 2.62 -55.71 -0.15 -6.92 15 15 C -0.39 -8.71 6.20 -15.05 -0.09 -8.80 15 16 H 0.12 2.56 6.71 -52.49 -0.35 2.20 15 17 C 0.07 1.45 3.44 -17.47 -0.06 1.39 15 18 N -0.83 -19.20 11.20 55.50 0.62 -18.58 15 19 Si 0.93 16.85 29.59 -169.99 -5.03 11.82 15 20 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 21 H -0.28 -4.99 7.11 56.52 0.40 -4.58 15 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 23 H 0.10 1.93 6.45 -51.93 -0.34 1.59 15 24 H 0.06 0.97 7.98 -51.93 -0.41 0.56 15 25 H 0.08 1.51 6.50 -51.93 -0.34 1.17 15 26 H 0.13 2.70 8.00 -52.49 -0.42 2.28 15 27 H 0.14 2.69 7.79 -52.49 -0.41 2.28 15 28 H 0.14 2.08 8.06 -52.49 -0.42 1.66 15 29 H 0.29 6.17 8.31 -40.82 -0.34 5.83 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -26.00 259.92 -5.78 -31.78 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.83 Total: 4.35 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -3.48 Total: -7.84 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.48 Total: -25.50 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.70 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.00 -5.78 -31.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.761 kcal (2) G-P(sol) polarization free energy of solvation -26.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds