Wall clock time and date at job start Mon Mar 30 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34895 * 118.76612 * 2 1 4 4 C 1.41612 * 120.10716 * 179.97438 * 3 2 1 5 5 O 1.22011 * 121.07168 * 180.02562 * 4 3 2 6 6 C 1.47388 * 117.85117 * 359.97438 * 4 3 2 7 7 C 1.39487 * 121.38913 * 180.02562 * 6 4 3 8 8 C 1.37987 * 119.59813 * 179.97438 * 7 6 4 9 9 F 1.35090 * 119.82413 * 179.97438 * 8 7 6 10 10 C 1.38963 * 120.35421 * 0.02562 * 8 7 6 11 11 C 1.37997 * 120.64348 * 359.97438 * 10 8 7 12 12 F 1.35102 * 120.08066 * 180.02562 * 11 10 8 13 13 C 1.39342 * 119.84037 * 0.02562 * 11 10 8 14 14 N 1.35884 * 118.76771 * 179.72792 * 2 1 3 15 15 C 1.36694 * 119.20721 * 0.02562 * 14 2 1 16 16 H 1.07995 * 119.99536 * 232.94462 * 15 14 2 17 17 C 1.39131 * 120.00374 * 52.94197 * 15 14 2 18 18 N 1.31242 * 119.99804 * 18.36503 * 17 15 14 19 19 Si 1.86794 * 120.00082 * 198.36705 * 17 15 14 20 20 H 1.48503 * 109.47317 * 60.00256 * 19 17 15 21 21 H 1.48497 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47365 * 300.00243 * 19 17 15 23 23 H 1.08997 * 109.47081 * 93.78841 * 1 2 3 24 24 H 1.08999 * 109.47273 * 333.78944 * 1 2 3 25 25 H 1.08997 * 109.47169 * 213.78948 * 1 2 3 26 26 H 1.07992 * 119.94151 * 359.95056 * 3 2 1 27 27 H 1.07999 * 120.20028 * 359.96000 * 7 6 4 28 28 H 1.07996 * 119.67753 * 179.97438 * 10 8 7 29 29 H 0.96997 * 119.99991 * 174.89559 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1561 1.1825 0.0000 4 6 3.5719 1.2156 0.0005 5 8 4.1769 2.2751 0.0010 6 6 4.2907 -0.0711 0.0017 7 6 5.6846 -0.1245 0.0028 8 6 6.3196 -1.3496 0.0044 9 9 7.6693 -1.4067 0.0050 10 6 5.5782 -2.5249 0.0043 11 6 4.1988 -2.4863 0.0032 12 9 3.4892 -3.6360 0.0037 13 6 3.5395 -1.2588 0.0016 14 7 2.1609 -1.1911 0.0057 15 6 1.4360 -2.3500 0.0106 16 1 1.6273 -3.1032 0.7605 17 6 0.4519 -2.5592 -0.9503 18 7 0.4501 -1.8480 -2.0533 19 14 -0.8668 -3.8523 -0.6706 20 1 -1.6308 -3.5222 0.5593 21 1 -1.7888 -3.8788 -1.8344 22 1 -0.2289 -5.1842 -0.5146 23 1 -0.3633 -0.0679 -1.0254 24 1 -0.3634 0.9220 0.4539 25 1 -0.3633 -0.8541 0.5715 26 1 1.5952 2.1053 -0.0008 27 1 6.2632 0.7874 0.0022 28 1 6.0865 -3.4778 0.0052 29 1 -0.1901 -2.0434 -2.7553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040175567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:56 Heat of formation + Delta-G solvation = -92.868299 kcal Electronic energy + Delta-G solvation = -20048.003540 eV Core-core repulsion = 16571.830563 eV Total energy + Delta-G solvation = -3476.172977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.90981 -49.83958 -41.96156 -39.06630 -38.39221 -34.87535 -33.57907 -32.15005 -30.78534 -28.56562 -26.98984 -25.03193 -23.75588 -22.65168 -20.50470 -19.55304 -19.12467 -17.91480 -17.71207 -17.12426 -16.88390 -16.55019 -16.23844 -16.17796 -15.77272 -15.61608 -15.35364 -14.64706 -14.52981 -14.09310 -13.78798 -13.72968 -13.57723 -13.28194 -13.13046 -12.78603 -12.57722 -12.38785 -12.12770 -11.71490 -10.76916 -10.40837 -10.12265 -9.87205 -8.81864 -8.46015 -6.55138 -0.43629 -0.22731 0.90541 1.43379 1.45775 1.54221 1.87762 2.05729 2.45048 2.63124 2.83986 2.99777 3.32598 3.38478 3.76115 3.84763 4.04576 4.24059 4.54320 4.59820 4.76342 4.83763 4.86552 4.91655 5.01872 5.11771 5.20867 5.45557 5.48833 5.68295 5.93869 6.40290 6.73884 7.00079 7.18370 8.35374 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.009001 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.504490 B = 3110.043341 C = 4224.271613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.229 3.771 3 C -0.386 4.386 4 C 0.395 3.605 5 O -0.583 6.583 6 C -0.186 4.186 7 C -0.081 4.081 8 C 0.073 3.927 9 F -0.131 7.131 10 C -0.130 4.130 11 C 0.091 3.909 12 F -0.116 7.116 13 C 0.124 3.876 14 N -0.304 5.304 15 C -0.400 4.400 16 H 0.115 0.885 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.986 3.014 20 H -0.250 1.250 21 H -0.274 1.274 22 H -0.265 1.265 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.182 0.818 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -4.789 2.938 5.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 C -0.411 4.411 4 C 0.293 3.707 5 O -0.476 6.476 6 C -0.191 4.191 7 C -0.101 4.101 8 C 0.052 3.948 9 F -0.110 7.110 10 C -0.151 4.151 11 C 0.069 3.931 12 F -0.094 7.094 13 C 0.017 3.983 14 N 0.024 4.976 15 C -0.525 4.525 16 H 0.132 0.868 17 C -0.171 4.171 18 N -0.491 5.491 19 Si 0.807 3.193 20 H -0.173 1.173 21 H -0.198 1.198 22 H -0.190 1.190 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.161 0.839 27 H 0.167 0.833 28 H 0.199 0.801 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.416 -4.422 2.764 5.231 hybrid contribution -0.344 -0.602 -0.352 0.777 sum 0.072 -5.024 2.412 5.573 Atomic orbital electron populations 1.21143 0.87677 1.03497 1.04172 1.20824 0.96177 0.84522 0.87259 1.21499 0.94924 0.97432 1.27221 1.18430 0.89737 0.86890 0.75664 1.90570 1.72394 1.33117 1.51526 1.20149 0.94202 0.94043 1.10712 1.20994 0.92846 0.97973 0.98278 1.16804 0.77172 0.92829 1.07994 1.91488 1.27860 1.97163 1.94445 1.21070 0.90895 1.00294 1.02818 1.16724 0.89018 0.80276 1.07081 1.91532 1.78057 1.46068 1.93789 1.18867 0.85723 0.93330 1.00401 1.39504 1.01402 1.06432 1.50275 1.20113 1.17779 0.97115 1.17519 0.86754 1.26413 0.99217 0.98840 0.92616 1.69933 1.34991 1.39216 1.04959 0.85086 0.77159 0.77886 0.79201 1.17329 1.19848 1.19006 0.89390 0.89218 0.90031 0.83858 0.83270 0.80102 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.20 71.23 0.58 -3.44 15 2 C 0.23 10.09 6.10 41.16 0.25 10.34 15 3 C -0.39 -17.39 9.51 22.33 0.21 -17.18 15 4 C 0.39 19.07 6.96 25.51 0.18 19.24 15 5 O -0.58 -30.30 17.35 -5.35 -0.09 -30.39 15 6 C -0.19 -8.27 5.89 -20.01 -0.12 -8.39 15 7 C -0.08 -3.13 9.63 22.51 0.22 -2.92 15 8 C 0.07 2.44 7.29 22.38 0.16 2.60 15 9 F -0.13 -4.01 17.26 44.97 0.78 -3.23 15 10 C -0.13 -4.21 9.97 22.39 0.22 -3.98 15 11 C 0.09 3.57 7.16 22.48 0.16 3.73 15 12 F -0.12 -4.65 13.91 44.97 0.63 -4.02 15 13 C 0.12 5.53 6.50 39.00 0.25 5.79 15 14 N -0.30 -14.00 2.62 -330.16 -0.87 -14.87 15 15 C -0.40 -17.82 6.20 84.15 0.52 -17.30 15 16 H 0.12 5.01 6.71 -2.91 -0.02 4.99 15 17 C 0.04 1.70 3.44 85.00 0.29 1.99 15 18 N -0.86 -39.42 11.20 21.69 0.24 -39.18 15 19 Si 0.99 33.23 29.59 68.60 2.03 35.26 15 20 H -0.25 -7.89 7.11 99.48 0.71 -7.18 15 21 H -0.27 -9.06 7.11 99.48 0.71 -8.36 15 22 H -0.27 -9.00 7.11 99.48 0.71 -8.29 15 23 H 0.09 3.47 6.45 -2.39 -0.02 3.45 15 24 H 0.09 2.74 7.98 -2.39 -0.02 2.72 15 25 H 0.08 2.98 6.50 -2.39 -0.02 2.97 15 26 H 0.14 5.92 8.00 -2.91 -0.02 5.89 15 27 H 0.15 5.53 7.79 -2.91 -0.02 5.50 15 28 H 0.18 4.45 8.06 -2.91 -0.02 4.43 15 29 H 0.29 12.36 8.31 -92.71 -0.77 11.59 15 Total: -1.00 -55.11 259.92 6.87 -48.25 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.21 Total: 17.71 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 2.94 Total: -9.52 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.62 Total: -54.05 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.09 Total: -30.39 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 1.40 Total: -7.25 kcal Atomic # 14 Polarization: 33.23 SS G_CDS: 2.03 Total: 35.26 kcal Total: -55.11 6.87 -48.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.622 kcal (2) G-P(sol) polarization free energy of solvation -55.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds