Wall clock time and date at job start Mon Mar 30 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39761 * 120.09091 * 155.68401 * 3 2 1 5 5 C 1.37747 * 119.92454 * 179.69743 * 4 3 2 6 6 C 1.38942 * 120.10837 * 0.53715 * 5 4 3 7 7 O 1.35779 * 119.90643 * 179.75810 * 6 5 4 8 8 C 1.42895 * 117.00010 * 359.72912 * 7 6 5 9 9 C 1.53006 * 109.47036 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99685 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46672 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46691 * 119.99941 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00323 * 15 13 11 19 19 C 1.39043 * 120.18354 * 359.48508 * 6 5 4 20 20 Cl 1.73597 * 119.96317 * 180.25440 * 19 6 5 21 21 C 1.37847 * 120.07004 * 0.23369 * 19 6 5 22 22 H 1.07997 * 120.03583 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.94464 * 180.29552 * 5 4 3 24 24 H 1.09001 * 109.47626 * 59.99977 * 8 7 6 25 25 H 1.09001 * 109.47255 * 299.99718 * 8 7 6 26 26 H 1.09001 * 109.47002 * 299.99477 * 9 8 7 27 27 H 1.08993 * 109.46955 * 59.99914 * 9 8 7 28 28 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 29 29 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 30 30 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 31 31 H 1.08006 * 120.05696 * 180.02562 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1029 -0.4979 5 6 4.6457 1.1025 -0.4905 6 6 5.3397 0.0037 0.0007 7 8 6.6975 0.0056 0.0015 8 6 7.3449 1.1667 -0.5225 9 6 8.8619 0.9864 -0.4384 10 6 9.5551 2.2294 -1.0001 11 6 11.0493 2.0521 -0.9167 12 1 11.4631 1.1435 -0.5047 13 6 11.8881 3.0493 -1.3673 14 7 11.3842 4.1555 -1.8694 15 14 13.7403 2.8292 -1.2646 16 1 14.0490 1.5061 -0.6651 17 1 14.3237 2.9027 -2.6282 18 1 14.3203 3.9036 -0.4194 19 6 4.6476 -1.0956 0.4967 20 17 5.5205 -2.4627 1.1152 21 6 3.2692 -1.1007 0.4983 22 1 2.7299 1.9563 -0.8832 23 1 5.1871 1.9561 -0.8708 24 1 7.0504 2.0405 0.0589 25 1 7.0524 1.3073 -1.5631 26 1 9.1540 0.8462 0.6023 27 1 9.1567 0.1127 -1.0195 28 1 9.2630 2.3693 -2.0408 29 1 9.2603 3.1035 -0.4193 30 1 11.9742 4.8572 -2.1861 31 1 2.7318 -1.9546 0.8840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042210766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:51 Heat of formation + Delta-G solvation = -8.488066 kcal Electronic energy + Delta-G solvation = -16169.340220 eV Core-core repulsion = 13248.622924 eV Total energy + Delta-G solvation = -2920.717296 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48814 -38.23060 -36.78938 -36.19064 -34.15750 -31.96288 -31.33081 -30.45445 -27.20074 -24.27277 -23.58878 -22.46679 -20.38610 -19.29873 -18.21436 -16.68651 -16.17688 -16.14691 -15.32741 -14.66919 -14.44763 -14.40212 -14.14641 -13.76648 -13.61383 -13.03633 -12.64053 -12.57313 -12.33846 -11.97348 -11.58192 -11.54761 -11.13842 -11.04628 -10.79856 -10.65990 -10.61282 -9.88279 -9.62738 -9.32015 -9.22764 -8.45590 -8.42798 -6.10524 -4.13148 0.47574 0.77096 1.90306 2.45420 2.59744 3.04337 3.26249 3.34268 3.38679 3.47435 3.62689 4.37673 4.41769 4.51951 4.68385 5.04968 5.26047 5.27791 5.34238 5.36001 5.46043 5.73011 5.78587 5.89256 6.09885 6.42521 6.51998 6.87200 7.20062 7.24157 7.51412 7.61371 7.87805 8.28867 8.93243 9.51854 11.00929 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.003414 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.178482 B = 8199.728412 C = 9033.156787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.264 3.736 3 C -0.073 4.073 4 C -0.020 4.020 5 C -0.204 4.204 6 C 0.184 3.816 7 O -0.295 6.295 8 C 0.053 3.947 9 C -0.108 4.108 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.082 4.082 20 Cl -0.045 7.045 21 C -0.023 4.023 22 H 0.141 0.859 23 H 0.152 0.848 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -8.188 3.687 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.051 4.051 3 C -0.077 4.077 4 C -0.040 4.040 5 C -0.222 4.222 6 C 0.134 3.866 7 O -0.206 6.206 8 C -0.021 4.021 9 C -0.146 4.146 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.110 4.110 20 Cl -0.016 7.016 21 C -0.044 4.044 22 H 0.159 0.841 23 H 0.170 0.830 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.218 -8.285 3.731 18.590 hybrid contribution 1.510 0.127 -0.059 1.517 sum -14.708 -8.157 3.672 17.215 Atomic orbital electron populations 1.81269 1.11949 1.07533 1.09274 1.25472 0.92326 0.93808 0.93463 1.15650 0.84527 0.97403 1.10148 1.21055 0.93385 0.96234 0.93355 1.21314 0.94623 0.99517 1.06792 1.19108 0.84581 0.91958 0.90912 1.86240 1.14070 1.43408 1.76891 1.23444 0.95499 0.85057 0.98119 1.21748 0.88244 1.02309 1.02308 1.19052 0.95034 0.90919 0.96216 1.21205 0.91062 1.02693 1.41012 0.92359 1.25020 0.99072 0.95196 0.95128 1.69960 1.35084 1.06729 1.41639 0.86499 0.85322 0.78235 0.77765 1.19637 1.20951 1.20945 1.19944 0.91468 0.91092 1.08464 1.98391 1.76181 1.41402 1.85675 1.20809 0.91027 0.97371 0.95221 0.84113 0.83004 0.91608 0.91602 0.91951 0.91957 0.96254 0.96257 0.92920 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.22 18.54 41.84 0.78 -4.44 16 2 C 0.26 2.66 15.33 -22.47 -0.34 2.32 16 3 C -0.07 -0.64 5.74 -106.84 -0.61 -1.25 16 4 C -0.02 -0.16 9.75 -39.19 -0.38 -0.54 16 5 C -0.20 -1.96 9.01 -39.50 -0.36 -2.32 16 6 C 0.18 2.18 6.69 -39.02 -0.26 1.92 16 7 O -0.29 -4.20 9.58 -19.05 -0.18 -4.39 16 8 C 0.05 0.78 4.74 37.16 0.18 0.95 16 9 C -0.11 -2.04 5.52 -26.73 -0.15 -2.18 16 10 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 11 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.08 -0.89 6.32 -39.43 -0.25 -1.14 16 20 Cl -0.05 -0.52 28.49 -51.86 -1.48 -1.99 16 21 C -0.02 -0.20 9.53 -39.16 -0.37 -0.58 16 22 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 23 H 0.15 1.33 6.27 -52.49 -0.33 1.00 16 24 H 0.07 0.89 7.64 -51.93 -0.40 0.50 16 25 H 0.07 0.89 7.66 -51.93 -0.40 0.50 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -29.45 299.23 -6.96 -36.41 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: -3.20 Total: -5.72 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -3.10 Total: -15.27 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 1.51 Total: -29.47 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.18 Total: -4.39 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -1.99 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.45 -6.96 -36.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042210766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds