Wall clock time and date at job start Mon Mar 30 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39761 * 120.09091 * 155.68401 * 3 2 1 5 5 C 1.37747 * 119.92454 * 179.69743 * 4 3 2 6 6 C 1.38942 * 120.10837 * 0.53715 * 5 4 3 7 7 O 1.35779 * 119.90643 * 179.75810 * 6 5 4 8 8 C 1.42895 * 117.00010 * 359.72912 * 7 6 5 9 9 C 1.53006 * 109.47036 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99685 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46672 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46691 * 119.99941 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00323 * 15 13 11 19 19 C 1.39043 * 120.18354 * 359.48508 * 6 5 4 20 20 Cl 1.73597 * 119.96317 * 180.25440 * 19 6 5 21 21 C 1.37847 * 120.07004 * 0.23369 * 19 6 5 22 22 H 1.07997 * 120.03583 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.94464 * 180.29552 * 5 4 3 24 24 H 1.09001 * 109.47626 * 59.99977 * 8 7 6 25 25 H 1.09001 * 109.47255 * 299.99718 * 8 7 6 26 26 H 1.09001 * 109.47002 * 299.99477 * 9 8 7 27 27 H 1.08993 * 109.46955 * 59.99914 * 9 8 7 28 28 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 29 29 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 30 30 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 31 31 H 1.08006 * 120.05696 * 180.02562 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1029 -0.4979 5 6 4.6457 1.1025 -0.4905 6 6 5.3397 0.0037 0.0007 7 8 6.6975 0.0056 0.0015 8 6 7.3449 1.1667 -0.5225 9 6 8.8619 0.9864 -0.4384 10 6 9.5551 2.2294 -1.0001 11 6 11.0493 2.0521 -0.9167 12 1 11.4631 1.1435 -0.5047 13 6 11.8881 3.0493 -1.3673 14 7 11.3842 4.1555 -1.8694 15 14 13.7403 2.8292 -1.2646 16 1 14.0490 1.5061 -0.6651 17 1 14.3237 2.9027 -2.6282 18 1 14.3203 3.9036 -0.4194 19 6 4.6476 -1.0956 0.4967 20 17 5.5205 -2.4627 1.1152 21 6 3.2692 -1.1007 0.4983 22 1 2.7299 1.9563 -0.8832 23 1 5.1871 1.9561 -0.8708 24 1 7.0504 2.0405 0.0589 25 1 7.0524 1.3073 -1.5631 26 1 9.1540 0.8462 0.6023 27 1 9.1567 0.1127 -1.0195 28 1 9.2630 2.3693 -2.0408 29 1 9.2603 3.1035 -0.4193 30 1 11.9742 4.8572 -2.1861 31 1 2.7318 -1.9546 0.8840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042210766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:50 Heat of formation + Delta-G solvation = -23.607684 kcal Electronic energy + Delta-G solvation = -16169.995856 eV Core-core repulsion = 13248.622924 eV Total energy + Delta-G solvation = -2921.372932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.36542 -39.16098 -37.65445 -37.06133 -35.93534 -33.70712 -32.08917 -31.42524 -28.82743 -25.69099 -24.41911 -23.70078 -21.90731 -20.09446 -19.24012 -18.40905 -17.33172 -17.25776 -16.48378 -16.09335 -15.44951 -15.38979 -14.98582 -14.80815 -14.73304 -14.26172 -13.87326 -13.79049 -13.67181 -13.28000 -12.91614 -12.66709 -12.48657 -12.42787 -12.11581 -12.02873 -11.84357 -11.50395 -11.42941 -11.19355 -10.53903 -10.06068 -9.30129 -8.19869 -6.29259 -0.31573 0.04318 1.08250 1.41958 1.43479 1.55644 1.64290 1.78994 2.04373 2.43855 2.71089 2.82428 3.14741 3.66379 3.75672 3.96105 4.11879 4.16619 4.28394 4.50877 4.58728 4.72247 4.88908 4.92262 5.02920 5.10960 5.18252 5.40293 5.53453 5.72458 5.85510 6.17591 6.28989 6.42862 6.86819 7.39903 8.91922 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.003414 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.178482 B = 8199.728412 C = 9033.156787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.288 3.712 3 C -0.067 4.067 4 C -0.006 4.006 5 C -0.202 4.202 6 C 0.163 3.837 7 O -0.312 6.312 8 C 0.065 3.935 9 C -0.098 4.098 10 C 0.029 3.971 11 C -0.543 4.543 12 H 0.058 0.942 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.960 3.040 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.091 4.091 20 Cl -0.056 7.056 21 C -0.013 4.013 22 H 0.168 0.832 23 H 0.162 0.838 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.264 0.736 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 -8.445 3.805 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.026 4.026 3 C -0.072 4.072 4 C -0.026 4.026 5 C -0.221 4.221 6 C 0.114 3.886 7 O -0.224 6.224 8 C -0.009 4.009 9 C -0.136 4.136 10 C -0.008 4.008 11 C -0.581 4.581 12 H 0.076 0.924 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.785 3.215 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.119 4.119 20 Cl -0.027 7.027 21 C -0.034 4.034 22 H 0.186 0.814 23 H 0.179 0.821 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.785 -8.557 3.856 19.231 hybrid contribution 1.593 0.192 -0.089 1.607 sum -15.192 -8.365 3.766 17.747 Atomic orbital electron populations 1.81309 1.13082 1.08787 1.10608 1.25464 0.92189 0.92642 0.92306 1.15655 0.83794 0.97648 1.10070 1.21311 0.92800 0.96635 0.91892 1.21435 0.95197 0.99076 1.06405 1.19343 0.83549 0.93238 0.92433 1.86154 1.15717 1.42943 1.77606 1.23093 0.92860 0.85759 0.99227 1.21428 0.91194 0.99555 1.01394 1.18911 0.94177 0.92565 0.95196 1.21676 0.93036 1.02679 1.40693 0.92383 1.25883 1.03851 0.94940 0.94821 1.70066 1.36766 1.07544 1.42601 0.85466 0.79658 0.78449 0.77904 1.18854 1.20438 1.20425 1.20043 0.92021 0.90721 1.09109 1.98387 1.76556 1.41904 1.85867 1.20966 0.90240 0.97932 0.94226 0.81423 0.82088 0.90430 0.90432 0.92379 0.92390 0.97867 0.97867 0.92719 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.57 18.54 19.00 0.35 -10.22 16 2 C 0.29 5.13 15.33 88.33 1.35 6.48 16 3 C -0.07 -0.99 5.74 -21.30 -0.12 -1.12 16 4 C -0.01 -0.08 9.75 22.52 0.22 0.14 16 5 C -0.20 -3.42 9.01 22.32 0.20 -3.22 16 6 C 0.16 3.60 6.69 22.63 0.15 3.75 16 7 O -0.31 -8.59 9.58 -91.08 -0.87 -9.46 16 8 C 0.06 1.84 4.74 71.98 0.34 2.18 16 9 C -0.10 -3.68 5.52 30.60 0.17 -3.51 16 10 C 0.03 1.38 4.97 29.85 0.15 1.53 16 11 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 12 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 13 C 0.00 0.17 5.46 84.66 0.46 0.64 16 14 N -0.93 -53.99 13.29 21.45 0.28 -53.70 16 15 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 16 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 C -0.09 -1.83 6.32 22.37 0.14 -1.69 16 20 Cl -0.06 -1.23 28.49 -2.72 -0.08 -1.30 16 21 C -0.01 -0.19 9.53 22.54 0.21 0.02 16 22 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 23 H 0.16 2.43 6.27 -2.91 -0.02 2.41 16 24 H 0.08 2.01 7.64 -2.39 -0.02 1.99 16 25 H 0.08 2.01 7.66 -2.39 -0.02 1.99 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -62.96 299.23 6.38 -56.59 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: 1.15 Total: -2.73 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.51 Total: -24.08 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.64 Total: -63.92 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.87 Total: -9.46 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.30 kcal Total: -62.96 6.38 -56.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042210766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.981 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds