Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37468 * 123.35108 * 2 1 4 4 C 1.33822 * 115.09865 * 179.97438 * 3 2 1 5 5 S 1.70605 * 110.95662 * 0.02562 * 4 3 2 6 6 C 1.36651 * 123.34910 * 179.70142 * 2 1 3 7 7 C 1.46584 * 125.46012 * 0.02562 * 6 2 1 8 8 O 1.21702 * 119.99748 * 351.44293 * 7 6 2 9 9 N 1.34772 * 119.99812 * 171.44050 * 7 6 2 10 10 C 1.46497 * 120.00375 * 3.45568 * 9 7 6 11 11 C 1.50701 * 109.47141 * 81.89784 * 10 9 7 12 12 H 1.08000 * 120.00154 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99540 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99518 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00324 * 0.02562 * 13 11 10 16 16 H 1.48489 * 109.47238 * 89.99924 * 15 13 11 17 17 H 1.48498 * 109.47045 * 209.99945 * 15 13 11 18 18 H 1.48500 * 109.46808 * 329.99368 * 15 13 11 19 19 C 1.46503 * 119.99644 * 183.45336 * 9 7 6 20 20 C 1.52998 * 117.50113 * 16.72892 * 19 9 7 21 21 C 1.53000 * 117.50190 * 308.06725 * 19 9 7 22 22 H 1.08995 * 109.47009 * 90.02727 * 1 2 3 23 23 H 1.08998 * 109.46724 * 330.02494 * 1 2 3 24 24 H 1.09003 * 109.46895 * 210.02840 * 1 2 3 25 25 H 1.07996 * 122.45363 * 359.93795 * 3 2 1 26 26 H 1.08001 * 124.51782 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47330 * 201.90067 * 10 9 7 28 28 H 1.09000 * 109.46744 * 321.89946 * 10 9 7 29 29 H 0.97002 * 119.99858 * 179.97438 * 14 13 11 30 30 H 1.09004 * 115.54838 * 162.40632 * 19 9 7 31 31 H 1.08994 * 117.49712 * 359.97438 * 20 19 9 32 32 H 1.08999 * 117.49658 * 145.01691 * 20 19 9 33 33 H 1.08996 * 117.50050 * 214.98430 * 21 19 9 34 34 H 1.09000 * 117.49602 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 0.0005 5 16 3.9623 -0.7081 0.0004 6 6 2.2583 -1.1415 0.0059 7 6 1.7284 -2.5082 0.0125 8 8 0.5366 -2.6980 0.1699 9 7 2.5610 -3.5545 -0.1557 10 6 4.0044 -3.3312 -0.2693 11 6 4.5991 -3.1794 1.1071 12 1 3.9654 -3.2433 1.9792 13 6 5.9524 -2.9589 1.2528 14 7 6.4713 -2.8260 2.4538 15 14 7.0484 -2.8477 -0.2558 16 1 7.1199 -1.4366 -0.7127 17 1 8.4117 -3.3268 0.0865 18 1 6.4850 -3.6913 -1.3402 19 6 2.0226 -4.9153 -0.2249 20 6 0.5244 -5.0694 -0.4939 21 6 1.0863 -5.3626 0.8995 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.8202 2.1334 -0.0010 26 1 4.3205 1.7490 0.0010 27 1 4.4651 -4.1813 -0.7725 28 1 4.1875 -2.4247 -0.8462 29 1 7.4234 -2.6712 2.5564 30 1 2.6903 -5.6639 -0.6515 31 1 -0.0608 -4.1584 -0.6189 32 1 0.2063 -5.9196 -1.0973 33 1 1.1377 -6.4055 1.2122 34 1 0.8713 -4.6446 1.6909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042359418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = 42.301333 kcal Electronic energy + Delta-G solvation = -18454.377614 eV Core-core repulsion = 15673.739513 eV Total energy + Delta-G solvation = -2780.638101 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75714 -37.49313 -35.56259 -34.52281 -32.41214 -30.17680 -28.09946 -27.46764 -23.36495 -22.61155 -22.22674 -21.85015 -19.68984 -17.61814 -17.24525 -16.98755 -15.83505 -15.16370 -14.69210 -14.57214 -14.21243 -13.63362 -13.24366 -12.99458 -12.89458 -12.63294 -12.49421 -12.24669 -11.63356 -11.55092 -11.43621 -11.21499 -10.83403 -10.73677 -10.67315 -10.19474 -9.88143 -9.77706 -9.39345 -8.97586 -8.75183 -8.12155 -7.73592 -7.46761 -6.39418 -4.36012 1.26524 2.39223 2.86893 2.99099 3.05409 3.12633 3.17088 3.62624 3.81825 4.09421 4.50883 4.89862 5.14729 5.40759 5.47603 5.58413 5.61796 5.80225 5.92127 6.01149 6.08177 6.14368 6.18417 6.20645 6.37338 6.47870 6.57477 6.62555 6.83179 7.00251 7.09682 7.15726 7.36280 7.97476 8.21706 8.67637 8.85296 9.15452 10.71897 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.011407 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.035786 B = 2454.054077 C = 3828.413298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.046 4.046 3 C -0.163 4.163 4 C -0.317 4.317 5 S 0.350 5.650 6 C -0.288 4.288 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.565 5.565 10 C 0.201 3.799 11 C -0.535 4.535 12 H 0.087 0.913 13 C 0.089 3.911 14 N -0.873 5.873 15 Si 0.845 3.155 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.258 1.258 19 C 0.086 3.914 20 C -0.201 4.201 21 C -0.184 4.184 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.149 0.851 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 1.993 -6.870 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.063 4.063 3 C -0.195 4.195 4 C -0.454 4.454 5 S 0.627 5.373 6 C -0.409 4.409 7 C 0.389 3.611 8 O -0.433 6.433 9 N -0.292 5.292 10 C 0.078 3.922 11 C -0.576 4.576 12 H 0.105 0.895 13 C -0.117 4.117 14 N -0.508 5.508 15 Si 0.670 3.330 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.182 1.182 19 C -0.019 4.019 20 C -0.239 4.239 21 C -0.223 4.223 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.140 0.860 26 H 0.167 0.833 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.006 1.185 -6.703 7.898 hybrid contribution -0.232 1.105 -0.459 1.219 sum -4.238 2.290 -7.162 8.631 Atomic orbital electron populations 1.20633 0.89941 1.03295 1.01894 1.19209 0.96887 0.90703 0.99492 1.19564 0.92709 0.98447 1.08756 1.26446 1.00669 1.08961 1.09355 1.85250 1.01455 0.90278 1.60302 1.24405 0.98772 0.96812 1.20881 1.16955 0.85224 0.83098 0.75870 1.90480 1.15578 1.84829 1.52384 1.47146 1.08050 1.04318 1.69705 1.20096 0.76730 0.96583 0.98828 1.21359 0.94105 1.50431 0.91696 0.89496 1.24797 0.97389 0.93877 0.95668 1.69859 1.13282 1.46154 1.21520 0.87250 0.81529 0.80102 0.84084 1.18707 1.20042 1.18245 1.21497 0.91789 0.84755 1.03851 1.23906 0.96613 1.04696 0.98647 1.23146 1.04787 1.01269 0.93093 0.91967 0.92686 0.88969 0.85996 0.83305 0.93180 0.95172 0.91904 0.85815 0.84431 0.90061 0.89254 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.67 36.01 0.35 -1.28 16 2 C -0.05 -0.88 5.90 -105.47 -0.62 -1.50 16 3 C -0.16 -2.85 9.97 -41.41 -0.41 -3.27 16 4 C -0.32 -5.66 10.92 29.18 0.32 -5.34 16 5 S 0.35 7.13 15.31 -107.50 -1.65 5.49 16 6 C -0.29 -6.02 6.24 -36.79 -0.23 -6.25 16 7 C 0.60 12.91 7.33 -12.90 -0.09 12.82 16 8 O -0.55 -11.88 9.99 5.19 0.05 -11.82 16 9 N -0.56 -11.84 2.85 -169.04 -0.48 -12.32 16 10 C 0.20 4.37 3.86 -5.20 -0.02 4.35 16 11 C -0.53 -13.41 7.60 -34.44 -0.26 -13.67 16 12 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 13 C 0.09 2.26 5.12 -17.82 -0.09 2.17 16 14 N -0.87 -23.90 13.96 55.43 0.77 -23.12 16 15 Si 0.85 18.27 26.78 -169.99 -4.55 13.72 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 19 C 0.09 1.57 6.61 -67.93 -0.45 1.12 16 20 C -0.20 -3.34 9.63 -26.69 -0.26 -3.60 16 21 C -0.18 -3.22 9.88 -26.69 -0.26 -3.49 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.68 5.84 -51.93 -0.30 1.37 16 25 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.05 1.04 6.98 -51.93 -0.36 0.68 16 28 H 0.03 0.67 3.85 -21.83 -0.08 0.58 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.12 2.00 8.02 -51.93 -0.42 1.58 16 31 H 0.14 2.58 5.15 -52.40 -0.27 2.31 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.90 7.65 -51.93 -0.40 1.50 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -27.19 284.92 -7.56 -34.75 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.96 Total: 6.96 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.04 Total: -17.94 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.29 Total: -35.45 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.05 Total: -11.82 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -4.55 Total: 13.72 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.65 Total: 5.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.19 -7.56 -34.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.050 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds