Wall clock time and date at job start Mon Mar 30 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37468 * 123.35108 * 2 1 4 4 C 1.33822 * 115.09865 * 179.97438 * 3 2 1 5 5 S 1.70605 * 110.95662 * 0.02562 * 4 3 2 6 6 C 1.36651 * 123.34910 * 179.70142 * 2 1 3 7 7 C 1.46584 * 125.46012 * 0.02562 * 6 2 1 8 8 O 1.21702 * 119.99748 * 351.44293 * 7 6 2 9 9 N 1.34772 * 119.99812 * 171.44050 * 7 6 2 10 10 C 1.46497 * 120.00375 * 3.45568 * 9 7 6 11 11 C 1.50701 * 109.47141 * 81.89784 * 10 9 7 12 12 H 1.08000 * 120.00154 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99540 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99518 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00324 * 0.02562 * 13 11 10 16 16 H 1.48489 * 109.47238 * 89.99924 * 15 13 11 17 17 H 1.48498 * 109.47045 * 209.99945 * 15 13 11 18 18 H 1.48500 * 109.46808 * 329.99368 * 15 13 11 19 19 C 1.46503 * 119.99644 * 183.45336 * 9 7 6 20 20 C 1.52998 * 117.50113 * 16.72892 * 19 9 7 21 21 C 1.53000 * 117.50190 * 308.06725 * 19 9 7 22 22 H 1.08995 * 109.47009 * 90.02727 * 1 2 3 23 23 H 1.08998 * 109.46724 * 330.02494 * 1 2 3 24 24 H 1.09003 * 109.46895 * 210.02840 * 1 2 3 25 25 H 1.07996 * 122.45363 * 359.93795 * 3 2 1 26 26 H 1.08001 * 124.51782 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47330 * 201.90067 * 10 9 7 28 28 H 1.09000 * 109.46744 * 321.89946 * 10 9 7 29 29 H 0.97002 * 119.99858 * 179.97438 * 14 13 11 30 30 H 1.09004 * 115.54838 * 162.40632 * 19 9 7 31 31 H 1.08994 * 117.49712 * 359.97438 * 20 19 9 32 32 H 1.08999 * 117.49658 * 145.01691 * 20 19 9 33 33 H 1.08996 * 117.50050 * 214.98430 * 21 19 9 34 34 H 1.09000 * 117.49602 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 0.0005 5 16 3.9623 -0.7081 0.0004 6 6 2.2583 -1.1415 0.0059 7 6 1.7284 -2.5082 0.0125 8 8 0.5366 -2.6980 0.1699 9 7 2.5610 -3.5545 -0.1557 10 6 4.0044 -3.3312 -0.2693 11 6 4.5991 -3.1794 1.1071 12 1 3.9654 -3.2433 1.9792 13 6 5.9524 -2.9589 1.2528 14 7 6.4713 -2.8260 2.4538 15 14 7.0484 -2.8477 -0.2558 16 1 7.1199 -1.4366 -0.7127 17 1 8.4117 -3.3268 0.0865 18 1 6.4850 -3.6913 -1.3402 19 6 2.0226 -4.9153 -0.2249 20 6 0.5244 -5.0694 -0.4939 21 6 1.0863 -5.3626 0.8995 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.8202 2.1334 -0.0010 26 1 4.3205 1.7490 0.0010 27 1 4.4651 -4.1813 -0.7725 28 1 4.1875 -2.4247 -0.8462 29 1 7.4234 -2.6712 2.5564 30 1 2.6903 -5.6639 -0.6515 31 1 -0.0608 -4.1584 -0.6189 32 1 0.2063 -5.9196 -1.0973 33 1 1.1377 -6.4055 1.2122 34 1 0.8713 -4.6446 1.6909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042359418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:17 Heat of formation + Delta-G solvation = 26.991709 kcal Electronic energy + Delta-G solvation = -18455.041489 eV Core-core repulsion = 15673.739513 eV Total energy + Delta-G solvation = -2781.301976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32305 -38.95164 -37.10672 -36.16581 -34.25742 -31.58863 -29.88131 -28.96323 -24.92540 -24.30797 -23.70745 -23.22858 -21.19792 -19.17288 -19.10396 -18.60677 -17.34446 -16.69640 -16.39327 -16.02924 -15.85545 -15.09118 -14.80704 -14.62171 -14.46083 -14.13460 -14.08065 -13.70814 -13.17402 -13.05977 -12.92680 -12.75036 -12.39356 -12.22761 -12.17622 -11.83106 -11.63923 -11.27716 -10.91572 -10.85457 -10.32446 -9.64768 -9.29370 -9.03781 -8.33262 -6.34755 -0.24664 0.83740 1.36095 1.37728 1.41007 1.47554 1.53991 2.08221 2.26723 2.29747 3.00740 3.09387 3.64607 4.01152 4.11941 4.17038 4.20353 4.40488 4.51644 4.53206 4.64920 4.75363 4.78352 4.85317 4.86764 5.07115 5.18552 5.21322 5.29192 5.41201 5.55306 5.70563 5.83931 6.12965 6.48502 6.63188 7.17382 7.26628 8.82399 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.011407 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.035786 B = 2454.054077 C = 3828.413298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.044 4.044 3 C -0.162 4.162 4 C -0.299 4.299 5 S 0.294 5.706 6 C -0.318 4.318 7 C 0.586 3.414 8 O -0.559 6.559 9 N -0.572 5.572 10 C 0.205 3.795 11 C -0.529 4.529 12 H 0.032 0.968 13 C 0.046 3.954 14 N -0.926 5.926 15 Si 0.897 3.103 16 H -0.245 1.245 17 H -0.278 1.278 18 H -0.234 1.234 19 C 0.063 3.937 20 C -0.180 4.180 21 C -0.189 4.189 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.159 0.841 26 H 0.178 0.822 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.272 0.728 30 H 0.148 0.852 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 2.871 -9.066 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.436 4.436 5 S 0.570 5.430 6 C -0.438 4.438 7 C 0.377 3.623 8 O -0.443 6.443 9 N -0.299 5.299 10 C 0.081 3.919 11 C -0.570 4.570 12 H 0.050 0.950 13 C -0.156 4.156 14 N -0.564 5.564 15 Si 0.718 3.282 16 H -0.169 1.169 17 H -0.203 1.203 18 H -0.157 1.157 19 C -0.041 4.041 20 C -0.217 4.217 21 C -0.228 4.228 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.177 0.823 26 H 0.196 0.804 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.392 2.036 -8.909 10.140 hybrid contribution -0.289 0.947 0.292 1.033 sum -4.681 2.983 -8.618 10.251 Atomic orbital electron populations 1.20652 0.88273 1.03573 1.02941 1.19729 0.98279 0.90642 0.97429 1.19926 0.92420 0.99484 1.07453 1.26635 1.01629 1.07613 1.07766 1.85178 1.02311 0.93047 1.62488 1.24553 0.98992 0.97244 1.23049 1.17229 0.85370 0.83749 0.75917 1.90482 1.15767 1.85195 1.52891 1.47234 1.07707 1.05397 1.69586 1.19997 0.77221 0.97723 0.96916 1.21220 0.93722 1.50447 0.91620 0.94982 1.25479 0.98549 0.93152 0.98371 1.70004 1.13702 1.48474 1.24182 0.86408 0.79236 0.81474 0.81039 1.16926 1.20293 1.15724 1.21941 0.93216 0.84149 1.04807 1.23831 0.94875 1.04955 0.98033 1.23133 1.05180 1.01845 0.92650 0.90378 0.89852 0.91194 0.82346 0.80414 0.91726 0.93856 0.91878 0.83467 0.86585 0.86407 0.86541 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.96 9.67 71.24 0.69 -2.27 16 2 C -0.04 -1.58 5.90 -20.42 -0.12 -1.70 16 3 C -0.16 -5.15 9.97 21.08 0.21 -4.94 16 4 C -0.30 -9.92 10.92 66.82 0.73 -9.19 16 5 S 0.29 11.84 15.31 -56.49 -0.86 10.98 16 6 C -0.32 -13.28 6.24 24.08 0.15 -13.13 16 7 C 0.59 25.74 7.33 86.42 0.63 26.37 16 8 O -0.56 -24.65 9.99 -4.36 -0.04 -24.70 16 9 N -0.57 -24.20 2.85 -806.93 -2.30 -26.50 16 10 C 0.21 8.91 3.86 85.63 0.33 9.24 16 11 C -0.53 -27.43 7.60 25.60 0.19 -27.24 16 12 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 13 C 0.05 2.39 5.12 84.66 0.43 2.83 16 14 N -0.93 -52.53 13.96 21.45 0.30 -52.23 16 15 Si 0.90 36.94 26.78 68.60 1.84 38.78 16 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 17 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 19 C 0.06 2.25 6.61 44.99 0.30 2.55 16 20 C -0.18 -5.74 9.63 30.62 0.29 -5.45 16 21 C -0.19 -6.61 9.88 30.62 0.30 -6.31 16 22 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.07 2.51 5.84 -2.39 -0.01 2.50 16 25 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 26 H 0.18 4.81 8.06 -2.91 -0.02 4.78 16 27 H 0.06 2.60 6.98 -2.39 -0.02 2.58 16 28 H 0.04 1.85 3.85 -21.53 -0.08 1.77 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.15 4.48 8.02 -2.38 -0.02 4.46 16 31 H 0.12 4.31 5.15 -9.81 -0.05 4.26 16 32 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.06 2.55 7.65 -2.39 -0.02 2.53 16 Total: -1.00 -61.65 284.92 4.02 -57.63 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.94 Total: 25.28 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.15 Total: -29.25 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -2.00 Total: -78.73 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.70 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 1.84 Total: 38.78 kcal Atomic # 16 Polarization: 11.84 SS G_CDS: -0.86 Total: 10.98 kcal Total: -61.65 4.02 -57.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.621 kcal (2) G-P(sol) polarization free energy of solvation -61.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds