Wall clock time and date at job start Mon Mar 30 2020 06:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33816 * 124.52075 * 2 1 4 4 C 1.37475 * 115.09762 * 179.71155 * 3 2 1 5 5 C 1.36648 * 113.29459 * 0.48426 * 4 3 2 6 6 C 1.46582 * 125.45676 * 179.80013 * 5 4 3 7 7 O 1.21705 * 120.00220 * 353.40452 * 6 5 4 8 8 N 1.34773 * 120.00263 * 173.39658 * 6 5 4 9 9 C 1.46508 * 119.99687 * 354.92485 * 8 6 5 10 10 C 1.50692 * 109.47456 * 84.75528 * 9 8 6 11 11 H 1.08000 * 119.99921 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00037 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00038 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47428 * 59.99712 * 14 12 10 16 16 H 1.48507 * 109.46979 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47070 * 299.99487 * 14 12 10 18 18 C 1.46502 * 120.00454 * 174.63741 * 8 6 5 19 19 C 1.53006 * 117.49396 * 17.03221 * 18 8 6 20 20 C 1.52995 * 117.49931 * 308.37119 * 18 8 6 21 21 S 1.70613 * 124.51838 * 179.97438 * 2 1 3 22 22 H 1.08991 * 109.47168 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46813 * 300.00406 * 1 2 3 24 24 H 1.09004 * 109.47124 * 59.99681 * 1 2 3 25 25 H 1.07995 * 122.45007 * 359.97438 * 3 2 1 26 26 H 1.08001 * 123.35398 * 180.29467 * 4 3 2 27 27 H 1.09006 * 109.46809 * 204.75642 * 9 8 6 28 28 H 1.09003 * 109.46877 * 324.74975 * 9 8 6 29 29 H 0.96994 * 120.00491 * 179.97438 * 13 12 10 30 30 H 1.09000 * 115.55271 * 162.69662 * 18 8 6 31 31 H 1.09001 * 117.49520 * 359.97438 * 19 18 8 32 32 H 1.08997 * 117.49391 * 145.01756 * 19 18 8 33 33 H 1.09001 * 117.49918 * 214.97659 * 20 18 8 34 34 H 1.09002 * 117.50142 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 0.0063 5 6 3.9492 -0.4491 0.0008 6 6 5.3123 -0.9884 0.0012 7 8 6.2636 -0.2381 -0.1143 8 7 5.5122 -2.3150 0.1297 9 6 4.3765 -3.2060 0.3802 10 6 3.7264 -3.5716 -0.9291 11 1 4.1195 -3.1793 -1.8554 12 6 2.6290 -4.4063 -0.9447 13 7 2.1500 -4.8836 0.1832 14 14 1.8236 -4.8601 -2.5679 15 1 2.8119 -5.5507 -3.4349 16 1 0.6724 -5.7631 -2.3138 17 1 1.3466 -3.6277 -3.2454 18 6 6.8642 -2.8669 0.0126 19 6 8.0380 -1.8944 0.1447 20 6 7.6800 -2.4814 -1.2230 21 16 2.4739 -1.4058 0.0006 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8429 2.0964 -0.0004 26 1 4.3551 1.6702 0.0117 27 1 4.7271 -4.1107 0.8770 28 1 3.6511 -2.6997 1.0172 29 1 1.3778 -5.4705 0.1724 30 1 6.9972 -3.8732 0.4096 31 1 7.8042 -0.8440 0.3183 32 1 8.9433 -2.2612 0.6283 33 1 8.3500 -3.2340 -1.6386 34 1 7.2107 -1.8175 -1.9490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042359423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:48 Heat of formation + Delta-G solvation = 33.552337 kcal Electronic energy + Delta-G solvation = -18260.436899 eV Core-core repulsion = 15479.419413 eV Total energy + Delta-G solvation = -2781.017486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57304 -37.12892 -35.52813 -34.50524 -32.42925 -31.12181 -27.41434 -26.64384 -23.40602 -22.96501 -21.99956 -21.81268 -19.65888 -17.72323 -17.02121 -16.58278 -15.78888 -14.94203 -14.64088 -14.59950 -14.26599 -13.50660 -13.33013 -13.03032 -12.58943 -12.47936 -12.29990 -12.17935 -11.58709 -11.49740 -11.30625 -11.08872 -10.95174 -10.78024 -10.63317 -10.40304 -9.81273 -9.78871 -9.19797 -8.85275 -8.61208 -7.92576 -7.61949 -7.45986 -6.43631 -4.44748 1.38741 2.60994 3.01701 3.10681 3.16605 3.17843 3.22284 3.76279 3.94543 4.14645 4.59207 4.90857 5.23765 5.47313 5.48221 5.64417 5.72122 5.75702 5.88417 6.00013 6.14449 6.16418 6.23360 6.36336 6.47308 6.57805 6.74064 6.87820 6.94147 6.97505 7.20562 7.48115 7.57056 7.69977 8.17099 8.55819 8.96152 9.12764 10.59258 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.011344 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.059078 B = 2467.776981 C = 3995.705160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.305 4.305 3 C -0.177 4.177 4 C -0.078 4.078 5 C -0.304 4.304 6 C 0.593 3.407 7 O -0.560 6.560 8 N -0.570 5.570 9 C 0.225 3.775 10 C -0.531 4.531 11 H 0.071 0.929 12 C 0.077 3.923 13 N -0.872 5.872 14 Si 0.890 3.110 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.089 3.911 19 C -0.208 4.208 20 C -0.191 4.191 21 S 0.407 5.593 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.116 0.884 26 H 0.133 0.867 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.272 0.728 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 3.797 0.604 3.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.424 4.424 3 C -0.207 4.207 4 C -0.112 4.112 5 C -0.426 4.426 6 C 0.384 3.616 7 O -0.444 6.444 8 N -0.298 5.298 9 C 0.102 3.898 10 C -0.575 4.575 11 H 0.089 0.911 12 C -0.130 4.130 13 N -0.508 5.508 14 Si 0.716 3.284 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.016 4.016 19 C -0.245 4.245 20 C -0.229 4.229 21 S 0.686 5.314 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.151 0.849 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.194 2.532 0.685 2.631 hybrid contribution -0.272 1.184 -1.003 1.575 sum -0.466 3.716 -0.317 3.759 Atomic orbital electron populations 1.20180 0.89401 1.02130 1.01597 1.25933 1.02460 1.05468 1.08535 1.19527 0.92642 0.98428 1.10111 1.20335 0.95618 0.94757 1.00531 1.24695 0.98427 0.98645 1.20786 1.17111 0.87000 0.81674 0.75844 1.90447 1.41372 1.59037 1.53510 1.47431 1.07603 1.06249 1.68476 1.19721 0.82732 0.89918 0.97381 1.21496 1.13252 1.29333 0.93414 0.91098 1.24939 0.96389 0.94624 0.97050 1.69897 1.23796 1.31228 1.25854 0.86630 0.79169 0.79157 0.83466 1.19589 1.20640 1.19329 1.21469 0.80376 0.97355 1.02397 1.24173 0.97065 1.03925 0.99362 1.23147 1.03872 1.03729 0.92191 1.86355 0.89747 0.96761 1.58498 0.91917 0.91704 0.91891 0.86561 0.84937 0.93005 0.93607 0.91760 0.85847 0.83613 0.90295 0.89282 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.33 36.01 0.37 -0.75 16 2 C -0.30 -5.61 6.28 -35.86 -0.23 -5.84 16 3 C -0.18 -3.19 10.00 -41.41 -0.41 -3.61 16 4 C -0.08 -1.52 10.02 -40.43 -0.41 -1.93 16 5 C -0.30 -6.55 6.20 -36.79 -0.23 -6.78 16 6 C 0.59 13.33 7.35 -12.90 -0.09 13.23 16 7 O -0.56 -12.94 12.77 5.18 0.07 -12.87 16 8 N -0.57 -12.35 2.84 -169.03 -0.48 -12.83 16 9 C 0.22 5.11 4.76 -5.19 -0.02 5.09 16 10 C -0.53 -12.71 6.59 -34.44 -0.23 -12.94 16 11 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 12 C 0.08 1.84 4.85 -17.82 -0.09 1.76 16 13 N -0.87 -21.35 13.29 55.43 0.74 -20.62 16 14 Si 0.89 19.00 29.54 -169.99 -5.02 13.98 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 C 0.09 1.70 6.62 -67.93 -0.45 1.25 16 19 C -0.21 -3.67 9.64 -26.69 -0.26 -3.93 16 20 C -0.19 -3.41 9.91 -26.69 -0.26 -3.67 16 21 S 0.41 8.50 15.44 -107.50 -1.66 6.84 16 22 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 26 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 27 H 0.05 1.21 7.96 -51.93 -0.41 0.80 16 28 H 0.05 1.08 4.92 -25.62 -0.13 0.96 16 29 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 30 H 0.12 2.13 8.05 -51.93 -0.42 1.71 16 31 H 0.15 2.94 4.90 -53.70 -0.26 2.68 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.80 7.88 -51.93 -0.41 1.40 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -25.67 294.37 -8.36 -34.03 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.13 Total: 5.14 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.30 Total: -18.11 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.26 Total: -33.44 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: 8.50 SS G_CDS: -1.66 Total: 6.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.67 -8.36 -34.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.579 kcal (2) G-P(sol) polarization free energy of solvation -25.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds